MD10G1321900.v1.1

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0003172
Physical Location & Seq
Forward (+)
40362207 .. 40362737
531 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1321900.v1.1.491

Sequence Viewer

Length: 531 bp
ATGATGAGCAAAAGCAGTGGTTTTGGTGGGGGAAGAAATGGTGAAGATTTTGAAGAAGGAGAGGGGGAAAACTCAAGTCTCAAGATGCTGAGGAATTCCAAAAATAATAGGTCCTCTACTTCTTCTTCTTCCTCTTCCTCCTCTGCATCTGCATGCCGCCTACCTACTGCTGCAAGAACGATCCCATGGGCCCATAATTATCCTCCAGCTGACCATGAAGTCCAAAAATCAGCTCCTGTGGCAATCCCTGATTGGTCAAAAATTTATGGCAAGAGTGCCAAGATTGGTTCTTCGGTTCATGATGATGATGATGTGTATGGTGTCAATGGGGATGGCGATGGTGATGGTGGTGTCATTGGTGATGTTGATGATGATGGCATGGTTCCTCCACATGAATGGGTTGCCAGAAAGCTTGCAAGAAGCCAGATTTCATCATTTTCTGTGTGTGAAGGGATTGGAAGAACACTCAAAGGAAGAGACCTCAGCAAAGTAAGGAATGCTGTTTTGACTAAAACTGGTTTCCTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

177

Amino Acids

18.64

Weight (kDa)

5.82

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 29 - 176 9.2e-40 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AciI CCGC 1 cut(s) 157
AclWI GGATC 1 cut(s) 175
AcsI RAATTY 2 cut(s) 94, 261
AgsI TTSAA 1 cut(s) 53
AluBI AGCT 3 cut(s) 209, 233, 412
AluI AGCT 3 cut(s) 209, 233, 412
Alw26I GTCTC 2 cut(s) 83, 471
AlwI GGATC 1 cut(s) 175
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 1 cut(s) 189
ApaI GGGCCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 2 cut(s) 94, 261
AspS9I GGNCC 3 cut(s) 111, 189, 190
AsuHPI GGTGA 3 cut(s) 53, 353, 371
AvaII GGWCC 1 cut(s) 111
BaeGI GKGCMC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 193
BbvCI CCTCAGC 2 cut(s) 89, 482
BbvI GCAGC 1 cut(s) 157
BccI CCATC 4 cut(s) 326, 332, 338, 368
BcoDI GTCTC 2 cut(s) 83, 471
BfaI CTAG 1 cut(s) 524
BisI GCNGC 2 cut(s) 157, 171
BlsI GCNGC 2 cut(s) 158, 172
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 3 cut(s) 111, 189, 190
BmiI GGNNCC 2 cut(s) 191, 384
BmsI GCATC 2 cut(s) 75, 155
BpmI CTGGAG 1 cut(s) 189
Bpu10I CCTNAGC 2 cut(s) 89, 482
BpuEI CTTGAG 2 cut(s) 58, 65
BsaI GGTCTC 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 520
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 80, 496
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 1 cut(s) 130
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 1 cut(s) 157
BshFI GGCC 1 cut(s) 191
BsmAI GTCTC 2 cut(s) 83, 471
BsmI GAATGC 1 cut(s) 502
BsnI GGCC 1 cut(s) 191
Bso31I GGTCTC 1 cut(s) 471
Bsp120I GGGCCC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 1 cut(s) 180
Bsp19I CCATGG 1 cut(s) 185
BspACI CCGC 1 cut(s) 157
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 2 cut(s) 81, 495
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 2 cut(s) 191, 384
BspPI GGATC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 471
BsrI ACTGG 1 cut(s) 520
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 185
Bst6I CTCTTC 2 cut(s) 139, 469
BstC8I GCNNGC 2 cut(s) 154, 414
BstDEI CTNAG 2 cut(s) 89, 482
BstDSI CCRYGG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 2 cut(s) 83, 471
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 157
BstXI CCANNNNNNTGG 1 cut(s) 396
BsuRI GGCC 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 185
BtgZI GCGATG 1 cut(s) 351
BtsCI GGATG 1 cut(s) 337
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 154, 414
CaiI CAGNNNCTG 1 cut(s) 236
CciI TCATGA 1 cut(s) 298
Cfr13I GGNCC 3 cut(s) 111, 189, 190
CspCI CAANNNNNGTGG 1 cut(s) 33
CviAII CATG 6 cut(s) 153, 186, 215, 299, 379, 392
CviJI RGCY 5 cut(s) 191, 209, 233, 412, 423
CviKI_1 RGCY 5 cut(s) 191, 209, 233, 412, 423
DdeI CTNAG 2 cut(s) 89, 482
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
Eam1104I CTCTTC 2 cut(s) 139, 469
EarI CTCTTC 2 cut(s) 139, 469
Eco130I CCWWGG 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 111
EcoRI GAATTC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 185
EcoT38I GRGCYC 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 6 cut(s) 156, 189, 218, 302, 382, 395
FaiI YATR 9 cut(s) 154, 187, 195, 216, 267, 300, 318, 380, 393
FatI CATG 6 cut(s) 152, 185, 214, 298, 378, 391
Fnu4HI GCNGC 2 cut(s) 157, 171
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 193
Fsp4HI GCNGC 2 cut(s) 157, 171
FspBI CTAG 1 cut(s) 524
GluI GCNGC 2 cut(s) 157, 171
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 1 cut(s) 191
Hin1II CATG 6 cut(s) 156, 189, 218, 302, 382, 395
HindIII AAGCTT 1 cut(s) 410
HphI GGTGA 3 cut(s) 53, 353, 371
Hpy188III TCNNGA 2 cut(s) 82, 299
HpyAV CCTTC 2 cut(s) 50, 443
HpyCH4V TGCA 4 cut(s) 146, 152, 173, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 2 cut(s) 89, 482
Hsp92II CATG 6 cut(s) 156, 189, 218, 302, 382, 395
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 6 cut(s) 219, 249, 261, 418, 437, 501
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 2 cut(s) 75, 155
MaeI CTAG 1 cut(s) 524
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 3 cut(s) 94, 196, 261
MnlI CCTC 9 cut(s) 55, 84, 124, 142, 148, 151, 213, 396, 491
MslI CAYNNNNRTG 3 cut(s) 151, 303, 394
MspA1I CMGCKG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 502
MwoI GCNNNNNNNGC 1 cut(s) 239
NcoI CCATGG 1 cut(s) 185
NdeII GATC 1 cut(s) 180
NlaIII CATG 6 cut(s) 156, 189, 218, 302, 382, 395
NlaIV GGNNCC 2 cut(s) 191, 384
NspI RCATGY 1 cut(s) 156
PaeI GCATGC 1 cut(s) 156
PagI TCATGA 1 cut(s) 298
PctI GAATGC 1 cut(s) 502
PkrI GCNGC 2 cut(s) 158, 172
PpuMI RGGWCCY 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 191, 384
PspOMI GGGCCC 1 cut(s) 189
PspPI GGNCC 3 cut(s) 111, 189, 190
PspPPI RGGWCCY 1 cut(s) 111
PstNI CAGNNNCTG 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 209
RseI CAYNNNNRTG 3 cut(s) 151, 303, 394
SatI GCNGC 2 cut(s) 157, 171
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 3 cut(s) 111, 189, 190
SduI GDGCHC 1 cut(s) 193
SetI ASST 6 cut(s) 113, 166, 211, 235, 414, 483
SfaNI GCATC 2 cut(s) 75, 155
SinI GGWCC 1 cut(s) 111
SmiMI CAYNNNNRTG 3 cut(s) 151, 303, 394
SmlI CTYRAG 2 cut(s) 73, 80
SmoI CTYRAG 2 cut(s) 73, 80
SphI GCATGC 1 cut(s) 156
Sse9I AATT 3 cut(s) 94, 196, 261
SsiI CCGC 1 cut(s) 157
SspMI CTAG 1 cut(s) 524
StyI CCWWGG 1 cut(s) 185
TasI AATT 3 cut(s) 94, 196, 261
TauI GCSGC 1 cut(s) 159
TscAI CASTG 1 cut(s) 22
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 4 cut(s) 231, 287, 408, 420
TspRI CASTG 1 cut(s) 22
VpaK11BI GGWCC 1 cut(s) 111
XapI RAATTY 2 cut(s) 94, 261
XceI RCATGY 1 cut(s) 156
XspI CTAG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.