pycom03g15120

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0003172
Physical Location & Seq
Reverse (-)
16466669 .. 16467250
582 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g15120.1

Sequence Viewer

Length: 582 bp
ATGGACAATAGGTATGGCCTATTAAGGCAGGGCAGTGGAGTTTGGAGGGCCTTGAGAGATGGAGACTTCGAGGAAGAAGATGTTTGGGAGGTTCTAAAAGATAGGAACAATAGTAAAGACATGGCTACTGGATCCAAAAGTTCCAATGTTTCTGTAGCAAGGCACCTCCCAACTGCTGCAAGAATGATTCCAAAACCCAGCAGCCACAATTACGCCAGTGGCAGCAGCTGCAGCAGCAGCAATACTACCAATCATGAAGCCAAAATTGTGCAGCAATCAGCACCTGTCAACATTCCTGATTGGTCCAAGTTGTACGGTCAGAAACCAAACAAGGCCTCCAAGAATGTTTCTTGGCGAAAATATGAGGGCGGTGACGATGATGATGAAGGCAGGGATGATGGCGGCAGAGATAGCAGTGATGATTATGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGTATGATCCAAAGGAACCCCCTCATGAGTTTATTGCTAGGAGGCTTGCAAGGAGTCAGATTTCTTCTTTTTCTGTTTGTGAAGGTGCAGGGAGGACCCTCAAAGGGAGGGATCGATCAGCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

194

Amino Acids

21.6

Weight (kDa)

5.15

Isoelectric Point (pI)

57.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 22 - 191 6.4e-24 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 162
AciI CCGC 2 cut(s) 369, 402
AclWI GGATC 4 cut(s) 126, 139, 455, 573
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 1 cut(s) 558
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 4 cut(s) 126, 139, 455, 573
AlwNI CAGNNNCTG 2 cut(s) 228, 284
AoxI GGCC 3 cut(s) 16, 48, 333
ApeKI GCWGC 9 cut(s) 176, 201, 222, 225, 228, 231, 234, 237, 271
AspS9I GGNCC 3 cut(s) 48, 303, 549
AsuHPI GGTGA 1 cut(s) 383
AvaII GGWCC 2 cut(s) 303, 549
BamHI GGATCC 1 cut(s) 131
BanI GGYRCC 1 cut(s) 162
BbvI GCAGC 9 cut(s) 163, 213, 215, 234, 237, 243, 246, 249, 283
BccI CCATC 2 cut(s) 53, 392
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 2 cut(s) 153, 229
Bme18I GGWCC 2 cut(s) 303, 549
BmgT120I GGNCC 3 cut(s) 48, 303, 549
BmiI GGNNCC 4 cut(s) 133, 164, 471, 551
BpuEI CTTGAG 1 cut(s) 73
Bsa29I ATCGAT 1 cut(s) 568
BsaXI ACNNNNNCTCC 4 cut(s) 320, 350, 440, 470
Bsc4I CCNNNNNNNGG 1 cut(s) 558
Bse1I ACTGG 2 cut(s) 133, 216
BseCI ATCGAT 1 cut(s) 568
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 1 cut(s) 558
BseNI ACTGG 2 cut(s) 133, 216
BseRI GAGGAG 7 cut(s) 449, 452, 455, 458, 461, 464, 467
BseXI GCAGC 9 cut(s) 163, 213, 215, 234, 237, 243, 246, 249, 283
BseYI CCCAGC 1 cut(s) 197
BsgI GTGCAG 2 cut(s) 290, 561
BshFI GGCC 3 cut(s) 18, 50, 335
BshNI GGYRCC 1 cut(s) 162
BshVI ATCGAT 1 cut(s) 568
BslI CCNNNNNNNGG 1 cut(s) 558
BsmAI GTCTC 1 cut(s) 57
BsnI GGCC 3 cut(s) 18, 50, 335
Bsp143I GATC 4 cut(s) 131, 460, 565, 569
BspACI CCGC 2 cut(s) 369, 402
BspANI GGCC 3 cut(s) 18, 50, 335
BspDI ATCGAT 1 cut(s) 568
BspHI TCATGA 2 cut(s) 253, 478
BspLI GGNNCC 4 cut(s) 133, 164, 471, 551
BspMAI CTGCAG 1 cut(s) 233
BspPI GGATC 4 cut(s) 126, 139, 455, 573
BspT107I GGYRCC 1 cut(s) 162
BsrI ACTGG 2 cut(s) 133, 216
BssMI GATC 4 cut(s) 131, 460, 565, 569
Bst4CI ACNGT 1 cut(s) 317
BstAPI GCANNNNNTGC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 501
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 4 cut(s) 134, 463, 568, 572
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 4 cut(s) 131, 460, 565, 569
BstMWI GCNNNNNNNGC 5 cut(s) 228, 231, 234, 237, 411
BstSFI CTRYAG 2 cut(s) 153, 229
BstV1I GCAGC 9 cut(s) 163, 213, 215, 234, 237, 243, 246, 249, 283
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
Bsu15I ATCGAT 1 cut(s) 568
BsuRI GGCC 3 cut(s) 18, 50, 335
BsuTUI ATCGAT 1 cut(s) 568
BtsCI GGATG 1 cut(s) 400
BtsI GCAGTG 2 cut(s) 40, 421
BtsIMutI CAGTG 3 cut(s) 40, 223, 421
Cac8I GCNNGC 1 cut(s) 501
CaiI CAGNNNCTG 2 cut(s) 228, 284
CciI TCATGA 2 cut(s) 253, 478
Cfr13I GGNCC 3 cut(s) 48, 303, 549
ClaI ATCGAT 1 cut(s) 568
Csp6I GTAC 1 cut(s) 313
CviAII CATG 3 cut(s) 121, 254, 479
CviJI RGCY 8 cut(s) 18, 50, 125, 204, 228, 260, 335, 499
CviKI_1 RGCY 8 cut(s) 18, 50, 125, 204, 228, 260, 335, 499
CviQI GTAC 1 cut(s) 313
DpnI GATC 4 cut(s) 133, 462, 567, 571
DpnII GATC 4 cut(s) 131, 460, 565, 569
Eco147I AGGCCT 1 cut(s) 335
Eco47I GGWCC 2 cut(s) 303, 549
EcoO109I RGGNCCY 2 cut(s) 48, 549
FaeI CATG 3 cut(s) 124, 257, 482
FaiI YATR 7 cut(s) 15, 122, 255, 363, 426, 459, 480
FatI CATG 3 cut(s) 120, 253, 478
FokI GGATG 1 cut(s) 407
FspBI CTAG 1 cut(s) 492
GsaI CCCAGC 1 cut(s) 201
HaeIII GGCC 3 cut(s) 18, 50, 335
Hin1II CATG 3 cut(s) 124, 257, 482
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 2 cut(s) 187, 508
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 2 cut(s) 321, 513
Hpy188III TCNNGA 3 cut(s) 254, 296, 479
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 2 cut(s) 380, 530
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4V TGCA 5 cut(s) 179, 231, 271, 503, 542
HpyF10VI GCNNNNNNNGC 5 cut(s) 228, 231, 234, 237, 411
Hsp92II CATG 3 cut(s) 124, 257, 482
Kzo9I GATC 4 cut(s) 131, 460, 565, 569
LpnPI CCDG 8 cut(s) 14, 114, 211, 229, 297, 309, 376, 528
Lsp1109I GCAGC 9 cut(s) 163, 213, 215, 234, 237, 243, 246, 249, 283
MaeI CTAG 1 cut(s) 492
MaeIII GTNAC 1 cut(s) 371
MalI GATC 4 cut(s) 133, 462, 567, 571
MboI GATC 4 cut(s) 131, 460, 565, 569
MboII GAAGA 3 cut(s) 86, 89, 510
MflI RGATCY 1 cut(s) 131
MluCI AATT 2 cut(s) 208, 264
MlyI GAGTC 1 cut(s) 517
MseI TTAA 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 228
MwoI GCNNNNNNNGC 5 cut(s) 228, 231, 234, 237, 411
NdeII GATC 4 cut(s) 131, 460, 565, 569
NlaIII CATG 3 cut(s) 124, 257, 482
NlaIV GGNNCC 4 cut(s) 133, 164, 471, 551
NmuCI GTSAC 1 cut(s) 371
PagI TCATGA 2 cut(s) 253, 478
PceI AGGCCT 1 cut(s) 335
PfeI GAWTC 1 cut(s) 187
PleI GAGTC 1 cut(s) 516
PpsI GAGTC 1 cut(s) 516
PpuMI RGGWCCY 1 cut(s) 549
Psp5II RGGWCCY 1 cut(s) 549
PspFI CCCAGC 1 cut(s) 197
PspN4I GGNNCC 4 cut(s) 133, 164, 471, 551
PspPI GGNCC 3 cut(s) 48, 303, 549
PspPPI RGGWCCY 1 cut(s) 549
PstI CTGCAG 1 cut(s) 233
PstNI CAGNNNCTG 2 cut(s) 228, 284
PsuI RGATCY 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 228
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SaqAI TTAA 1 cut(s) 23
Sau3AI GATC 4 cut(s) 131, 460, 565, 569
Sau96I GGNCC 3 cut(s) 48, 303, 549
SchI GAGTC 1 cut(s) 517
SetI ASST 7 cut(s) 14, 93, 168, 230, 286, 432, 541
SfcI CTRYAG 2 cut(s) 153, 229
SinI GGWCC 2 cut(s) 303, 549
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 2 cut(s) 208, 264
SseBI AGGCCT 1 cut(s) 335
SsiI CCGC 2 cut(s) 369, 402
SspMI CTAG 1 cut(s) 492
StuI AGGCCT 1 cut(s) 335
TaaI ACNGT 1 cut(s) 317
TaqI TCGA 2 cut(s) 69, 568
TasI AATT 2 cut(s) 208, 264
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 3 cut(s) 40, 223, 421
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 9 cut(s) 176, 201, 222, 225, 228, 231, 234, 237, 271
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 2 cut(s) 270, 399
TspRI CASTG 3 cut(s) 40, 223, 421
VpaK11BI GGWCC 2 cut(s) 303, 549
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.