FvH4_3g22890

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003172
Physical Location & Seq
Forward (+)
16030788 .. 16032766
1979 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22890.t2

Sequence Viewer

Length: 603 bp
ATGGGGGATAGGTATCTATCAAGGCAGGGAAGTGGGGTTTGGAGGTCTTTCAGATATGGAGATTTTGAGGAAGAAGATGTTTGGGATGTTATAAGAGATAGAAACAATTCAAGCACCATGCCTGTTAGATCCAAGGAATCCTCAGTTTCTGTTCCGAGACGCCTCCCAACTGCTTCAAGGATGATACCGAGAGCTAGCAGCCACAATTATGGCAGTGGAAGTAGCTATAGCAGTAGCAACAACACTCATGAAGCCAAAATTGTGCAACAATCTGCACCAGTTCACATTCCCAGCTGGTCAAAAGCAAATGGCCAGAAATCAAACAAGGGTTCCCACAATAGTTCATGGCATAATGAGTGTGACGATTCTGATGATGATGATATTGATGAAGATGGGGATCATGACGATGAGGATGAAGAGGAAGAGGCAGATGACTACAATGCAAAGGAACCCCCACACGAGTTTCTTGCCAGGAGGCTTGCAAGGAGTCAGATTTCTTCTTTTTCAGTCTTTGAAGGAGCTGGGAGGACCCTAAAGGGAAGGGACCTCAGCAAAGTGAGGAATGCTGTTCTAACAAAAACGGGTTTCCTTGAATCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

201

Amino Acids

22.47

Weight (kDa)

5.17

Isoelectric Point (pI)

64.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 21 - 198 3.6e-33 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 92
AclWI GGATC 2 cut(s) 123, 405
AcoI YGGCCR 1 cut(s) 310
AcyI GRCGYC 1 cut(s) 160
AgsI TTSAA 4 cut(s) 111, 177, 515, 593
AjnI CCWGG 1 cut(s) 470
AjuI GAANNNNNNNTTGG 2 cut(s) 22, 54
AluBI AGCT 4 cut(s) 194, 225, 294, 521
AluI AGCT 4 cut(s) 194, 225, 294, 521
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 2 cut(s) 123, 405
AlwNI CAGNNNCTG 1 cut(s) 149
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 1 cut(s) 198
Asp700I GAANNNNTTC 1 cut(s) 106
AspS9I GGNCC 2 cut(s) 528, 544
AsuNHI GCTAGC 1 cut(s) 194
AvaII GGWCC 2 cut(s) 528, 544
BalI TGGCCA 1 cut(s) 312
BauI CACGAG 1 cut(s) 458
BbvCI CCTCAGC 1 cut(s) 548
BbvI GCAGC 1 cut(s) 210
BccI CCATC 1 cut(s) 386
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BciT130I CCWGG 1 cut(s) 472
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 226
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 472
Bme18I GGWCC 2 cut(s) 528, 544
BmgT120I GGNCC 2 cut(s) 528, 544
BmiI GGNNCC 4 cut(s) 331, 450, 530, 545
BmrFI CCNGG 1 cut(s) 472
BmtI GCTAGC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 548
BsaBI GATNNNNATC 2 cut(s) 12, 396
BsaHI GRCGYC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 278
Bse8I GATNNNNATC 2 cut(s) 12, 396
BseBI CCWGG 1 cut(s) 472
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 3 cut(s) 91, 186, 418
BseJI GATNNNNATC 2 cut(s) 12, 396
BseMII CTCAG 2 cut(s) 156, 562
BseNI ACTGG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 210
BseYI CCCAGC 2 cut(s) 290, 521
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 1 cut(s) 312
BslFI GGGAC 1 cut(s) 557
BsmAI GTCTC 1 cut(s) 151
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 557
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 1 cut(s) 312
Bsp143I GATC 2 cut(s) 128, 397
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 2 cut(s) 155, 561
BspHI TCATGA 2 cut(s) 247, 400
BspLI GGNNCC 4 cut(s) 331, 450, 530, 545
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 2 cut(s) 123, 405
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 128, 397
BssNI GRCGYC 1 cut(s) 160
BssSI CACGAG 1 cut(s) 458
BssT1I CCWWGG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 472
Bst6I CTCTTC 2 cut(s) 411, 417
BstACI GRCGYC 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 196, 480
BstDEI CTNAG 2 cut(s) 142, 548
BstF5I GGATG 3 cut(s) 91, 186, 418
BstKTI GATC 2 cut(s) 131, 400
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 2 cut(s) 128, 397
BstNI CCWGG 1 cut(s) 472
BstSCI CCNGG 1 cut(s) 470
BstSFI CTRYAG 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 128
BstXI CCANNNNNNTGG 1 cut(s) 209
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 1 cut(s) 312
BtsCI GGATG 3 cut(s) 91, 186, 418
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 2 cut(s) 196, 480
CaiI CAGNNNCTG 1 cut(s) 149
CciI TCATGA 2 cut(s) 247, 400
Cfr13I GGNCC 2 cut(s) 528, 544
CseI GACGC 1 cut(s) 168
CviAII CATG 4 cut(s) 118, 248, 345, 401
CviJI RGCY 8 cut(s) 194, 201, 225, 254, 294, 312, 478, 521
CviKI_1 RGCY 8 cut(s) 194, 201, 225, 254, 294, 312, 478, 521
DdeI CTNAG 2 cut(s) 142, 548
DpnI GATC 2 cut(s) 130, 399
DpnII GATC 2 cut(s) 128, 397
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 2 cut(s) 411, 417
EarI CTCTTC 2 cut(s) 411, 417
Eco130I CCWWGG 1 cut(s) 132
Eco47I GGWCC 2 cut(s) 528, 544
EcoO109I RGGNCCY 2 cut(s) 528, 544
EcoRII CCWGG 1 cut(s) 470
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 4 cut(s) 121, 251, 348, 404
FaiI YATR 9 cut(s) 57, 92, 119, 210, 228, 249, 346, 351, 402
FaqI GGGAC 1 cut(s) 557
FatI CATG 4 cut(s) 117, 247, 344, 400
Fnu4HI GCNGC 1 cut(s) 199
FokI GGATG 3 cut(s) 98, 193, 425
Fsp4HI GCNGC 1 cut(s) 199
FspBI CTAG 1 cut(s) 195
GluI GCNGC 1 cut(s) 199
GsaI CCCAGC 2 cut(s) 294, 525
HaeIII GGCC 1 cut(s) 312
HgaI GACGC 1 cut(s) 168
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 4 cut(s) 121, 251, 348, 404
HinfI GANTC 4 cut(s) 137, 365, 487, 593
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 4 cut(s) 53, 156, 370, 492
Hpy188III TCNNGA 2 cut(s) 248, 401
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 2 cut(s) 509, 534
HpyCH4V TGCA 4 cut(s) 265, 275, 443, 482
HpyF3I CTNAG 2 cut(s) 142, 548
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 4 cut(s) 121, 251, 348, 404
Kzo9I GATC 2 cut(s) 128, 397
LmnI GCTCC 1 cut(s) 518
LpnPI CCDG 9 cut(s) 11, 135, 280, 291, 304, 326, 457, 484, 507
Lsp1109I GCAGC 1 cut(s) 210
MaeI CTAG 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 359
MalI GATC 2 cut(s) 130, 399
MboI GATC 2 cut(s) 128, 397
MboII GAAGA 6 cut(s) 83, 86, 401, 428, 434, 489
MflI RGATCY 1 cut(s) 128
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 3 cut(s) 106, 205, 258
MluNI TGGCCA 1 cut(s) 312
MlyI GAGTC 1 cut(s) 496
Mox20I TGGCCA 1 cut(s) 312
MroXI GAANNNNTTC 1 cut(s) 106
MscI TGGCCA 1 cut(s) 312
MslI CAYNNNNRTG 2 cut(s) 207, 405
Msp20I TGGCCA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 472
Mva1269I GAATGC 1 cut(s) 568
MvaI CCWGG 1 cut(s) 472
NdeII GATC 2 cut(s) 128, 397
NheI GCTAGC 1 cut(s) 194
NlaIII CATG 4 cut(s) 121, 251, 348, 404
NlaIV GGNNCC 4 cut(s) 331, 450, 530, 545
NmuCI GTSAC 1 cut(s) 359
PagI TCATGA 2 cut(s) 247, 400
PctI GAATGC 1 cut(s) 568
PdmI GAANNNNTTC 1 cut(s) 106
PfeI GAWTC 3 cut(s) 137, 365, 593
PkrI GCNGC 1 cut(s) 200
PleI GAGTC 1 cut(s) 495
PpsI GAGTC 1 cut(s) 495
PpuMI RGGWCCY 2 cut(s) 528, 544
PsiI TTATAA 1 cut(s) 92
Psp5II RGGWCCY 2 cut(s) 528, 544
Psp6I CCWGG 1 cut(s) 470
PspFI CCCAGC 2 cut(s) 290, 521
PspGI CCWGG 1 cut(s) 470
PspN4I GGNNCC 4 cut(s) 331, 450, 530, 545
PspPI GGNCC 2 cut(s) 528, 544
PspPPI RGGWCCY 2 cut(s) 528, 544
PstNI CAGNNNCTG 1 cut(s) 149
PsuI RGATCY 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 294
RseI CAYNNNNRTG 2 cut(s) 207, 405
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 2 cut(s) 128, 397
Sau96I GGNCC 2 cut(s) 528, 544
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 1 cut(s) 472
SetI ASST 7 cut(s) 14, 47, 196, 227, 296, 523, 549
SfcI CTRYAG 1 cut(s) 226
SinI GGWCC 2 cut(s) 528, 544
SmiMI CAYNNNNRTG 2 cut(s) 207, 405
Sse9I AATT 3 cut(s) 106, 205, 258
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 470
StyI CCWWGG 1 cut(s) 132
TasI AATT 3 cut(s) 106, 205, 258
TfiI GAWTC 3 cut(s) 137, 365, 593
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 1 cut(s) 198
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 4 cut(s) 264, 333, 402, 429
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 2 cut(s) 528, 544
XmnI GAANNNNTTC 1 cut(s) 106
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.