Rroxscaffold_1G00041090

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003172
Physical Location & Seq
Reverse (-)
58857451 .. 58859338
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00041090.1

Sequence Viewer

Length: 678 bp
ATGTTGCAGATACCCCTTTGGAATCTTGGGAAAGTTGTGGTGCTTGGTGGTACGAAATCAGAGAAAGGTAGGCAACCACCAATGGAGGATATGTATCTATCAAGGCAGGGAAGTGGAGTTTGGAGGTCTTTGAGAGATGGAGATTTTGAGGAAGAAGATGTTTGGAATGTTTTAAGAGATAGAAAAACTTCAAACACCATGACTGGTAGATCCAAAGAATCCTCAGTTTCTGTTCCGAGACGCCTCCCAACCGCTTCAAGGATGATACCAAGAGCTAGCAGCCACAATTATGGTAGTGGAAGTAGCTGTAGCAGTAGCAACAACACTCATGAAGCCAAAATTGTGCAACAATCTGCACCTGTTCACATTCCCAACTGGTCAAAAGCATATGGCCAGGAATCAAAGAAGGGTTTCAAAAATAGTTCATGGCATAATGAGTATGACGATGCTGATGATGATGATGAAGACGGGGATCTTGACGATGAGGATGAAGAGGAGGAGGAGGATGACTACGATTCAAAGGAACCCCCACATGAATTTATTGCCAGGAGGCTTGCAAGAAGTCAGATTTCTTCTTTTTCAGTTTGTGAAGGTGCAGGGAGGACCCTTAAAGGCAGGGACCTCAGCAAAGTGAGGAATGCTGTTTTGATAAAAACTGGTTTCCTTGAATCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

225

Amino Acids

25.27

Weight (kDa)

5.17

Isoelectric Point (pI)

64.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 48 - 223 7.9e-35 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 252
AclWI GGATC 2 cut(s) 204, 480
AcoI YGGCCR 1 cut(s) 391
AcsI RAATTY 1 cut(s) 536
AcyI GRCGYC 1 cut(s) 241
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 5 cut(s) 192, 258, 415, 519, 668
AjnI CCWGG 2 cut(s) 393, 545
AjuI GAANNNNNNNTTGG 2 cut(s) 103, 135
AluBI AGCT 2 cut(s) 275, 306
AluI AGCT 2 cut(s) 275, 306
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 2 cut(s) 204, 480
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 1 cut(s) 279
ApoI RAATTY 1 cut(s) 536
Asp700I GAANNNNTTC 2 cut(s) 187, 410
AspS9I GGNCC 2 cut(s) 603, 619
AsuNHI GCTAGC 1 cut(s) 275
AvaII GGWCC 2 cut(s) 603, 619
BalI TGGCCA 1 cut(s) 393
BbsI GAAGAC 1 cut(s) 471
BbvCI CCTCAGC 1 cut(s) 623
BbvI GCAGC 1 cut(s) 291
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 2 cut(s) 395, 547
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 1 cut(s) 307
BisI GCNGC 1 cut(s) 280
BlsI GCNGC 1 cut(s) 281
Bme1390I CCNGG 2 cut(s) 395, 547
Bme18I GGWCC 2 cut(s) 603, 619
BmgT120I GGNCC 2 cut(s) 603, 619
BmiI GGNNCC 3 cut(s) 525, 605, 620
BmrFI CCNGG 2 cut(s) 395, 547
BmsI GCATC 1 cut(s) 436
BmtI GCTAGC 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 471
Bpu10I CCTNAGC 1 cut(s) 623
BsaBI GATNNNNATC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 3 cut(s) 208, 380, 661
Bse8I GATNNNNATC 1 cut(s) 93
BseBI CCWGG 2 cut(s) 395, 547
BseGI GGATG 3 cut(s) 267, 493, 511
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 2 cut(s) 237, 637
BseNI ACTGG 3 cut(s) 208, 380, 661
BseRI GAGGAG 3 cut(s) 509, 512, 515
BseXI GCAGC 1 cut(s) 291
BsgI GTGCAG 2 cut(s) 339, 615
BshFI GGCC 1 cut(s) 393
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 232
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 632
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 1 cut(s) 393
Bsp143I GATC 2 cut(s) 209, 472
BspACI CCGC 1 cut(s) 252
BspANI GGCC 1 cut(s) 393
BspCNI CTCAG 2 cut(s) 236, 636
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 3 cut(s) 525, 605, 620
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 2 cut(s) 204, 480
BsrI ACTGG 3 cut(s) 208, 380, 661
BssMI GATC 2 cut(s) 209, 472
BssNI GRCGYC 1 cut(s) 241
Bst2UI CCWGG 2 cut(s) 395, 547
Bst6I CTCTTC 1 cut(s) 486
BstACI GRCGYC 1 cut(s) 241
BstC8I GCNNGC 2 cut(s) 277, 555
BstDEI CTNAG 2 cut(s) 223, 623
BstF5I GGATG 3 cut(s) 267, 493, 511
BstKTI GATC 2 cut(s) 212, 475
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 2 cut(s) 209, 472
BstNI CCWGG 2 cut(s) 395, 547
BstSCI CCNGG 2 cut(s) 393, 545
BstSFI CTRYAG 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 471
BstX2I RGATCY 2 cut(s) 209, 472
BstXI CCANNNNNNTGG 1 cut(s) 290
BstYI RGATCY 2 cut(s) 209, 472
BsuRI GGCC 1 cut(s) 393
BtsCI GGATG 3 cut(s) 267, 493, 511
Cac8I GCNNGC 2 cut(s) 277, 555
CaiI CAGNNNCTG 1 cut(s) 230
CciI TCATGA 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 603, 619
CseI GACGC 1 cut(s) 249
Csp6I GTAC 1 cut(s) 51
CviAII CATG 4 cut(s) 199, 329, 426, 533
CviJI RGCY 6 cut(s) 275, 282, 306, 335, 393, 553
CviKI_1 RGCY 6 cut(s) 275, 282, 306, 335, 393, 553
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 2 cut(s) 223, 623
DpnI GATC 2 cut(s) 211, 474
DpnII GATC 2 cut(s) 209, 472
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco47I GGWCC 2 cut(s) 603, 619
EcoO109I RGGNCCY 2 cut(s) 603, 619
EcoRII CCWGG 2 cut(s) 393, 545
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 4 cut(s) 202, 332, 429, 536
FaqI GGGAC 1 cut(s) 632
FatI CATG 4 cut(s) 198, 328, 425, 532
FauNDI CATATG 1 cut(s) 388
Fnu4HI GCNGC 1 cut(s) 280
FokI GGATG 3 cut(s) 274, 500, 518
Fsp4HI GCNGC 1 cut(s) 280
FspBI CTAG 1 cut(s) 276
GluI GCNGC 1 cut(s) 280
HaeIII GGCC 1 cut(s) 393
HgaI GACGC 1 cut(s) 249
Hin1I GRCGYC 1 cut(s) 241
Hin1II CATG 4 cut(s) 202, 332, 429, 536
HinfI GANTC 5 cut(s) 22, 218, 398, 515, 668
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 3 cut(s) 61, 237, 567
Hpy188III TCNNGA 2 cut(s) 329, 476
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 2 cut(s) 400, 584
HpyCH4V TGCA 5 cut(s) 7, 346, 356, 557, 596
HpyF3I CTNAG 2 cut(s) 223, 623
Hsp92I GRCGYC 1 cut(s) 241
Hsp92II CATG 4 cut(s) 202, 332, 429, 536
Kzo9I GATC 2 cut(s) 209, 472
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 1 cut(s) 436
MaeI CTAG 1 cut(s) 276
MalI GATC 2 cut(s) 211, 474
MboI GATC 2 cut(s) 209, 472
MboII GAAGA 5 cut(s) 164, 167, 476, 503, 564
MflI RGATCY 2 cut(s) 209, 472
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 3 cut(s) 286, 339, 536
MluNI TGGCCA 1 cut(s) 393
Mox20I TGGCCA 1 cut(s) 393
MroXI GAANNNNTTC 2 cut(s) 187, 410
MscI TGGCCA 1 cut(s) 393
MseI TTAA 2 cut(s) 173, 609
MslI CAYNNNNRTG 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 393
MspR9I CCNGG 2 cut(s) 395, 547
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 2 cut(s) 395, 547
NdeI CATATG 1 cut(s) 388
NdeII GATC 2 cut(s) 209, 472
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 4 cut(s) 202, 332, 429, 536
NlaIV GGNNCC 3 cut(s) 525, 605, 620
PagI TCATGA 1 cut(s) 328
PctI GAATGC 1 cut(s) 643
PdmI GAANNNNTTC 2 cut(s) 187, 410
PfeI GAWTC 5 cut(s) 22, 218, 398, 515, 668
PkrI GCNGC 1 cut(s) 281
PpuMI RGGWCCY 2 cut(s) 603, 619
Psp5II RGGWCCY 2 cut(s) 603, 619
Psp6I CCWGG 2 cut(s) 393, 545
PspGI CCWGG 2 cut(s) 393, 545
PspN4I GGNNCC 3 cut(s) 525, 605, 620
PspPI GGNCC 2 cut(s) 603, 619
PspPPI RGGWCCY 2 cut(s) 603, 619
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 2 cut(s) 209, 472
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 2 cut(s) 173, 609
SatI GCNGC 1 cut(s) 280
Sau3AI GATC 2 cut(s) 209, 472
Sau96I GGNCC 2 cut(s) 603, 619
ScrFI CCNGG 2 cut(s) 395, 547
SetI ASST 7 cut(s) 70, 128, 277, 308, 361, 595, 624
SfaNI GCATC 1 cut(s) 436
SfcI CTRYAG 1 cut(s) 307
SinI GGWCC 2 cut(s) 603, 619
SmiMI CAYNNNNRTG 1 cut(s) 288
Sse9I AATT 3 cut(s) 286, 339, 536
SsiI CCGC 1 cut(s) 252
SspMI CTAG 1 cut(s) 276
StyD4I CCNGG 2 cut(s) 393, 545
TasI AATT 3 cut(s) 286, 339, 536
TfiI GAWTC 5 cut(s) 22, 218, 398, 515, 668
Tru1I TTAA 2 cut(s) 173, 609
Tru9I TTAA 2 cut(s) 173, 609
TseI GCWGC 1 cut(s) 279
TspDTI ATGAA 5 cut(s) 345, 414, 477, 504, 549
VpaK11BI GGWCC 2 cut(s) 603, 619
XapI RAATTY 1 cut(s) 536
XmnI GAANNNNTTC 2 cut(s) 187, 410
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.