RLG00000033964

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003172
Physical Location & Seq
Forward (+)
34765919 .. 34766515
597 bp
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UTR
Exon/CDS
Intron
RLM00000033964

Sequence Viewer

Length: 426 bp
ATGGAGGATAGGTATCTATCAAGGCAGGGAAGTGGAGTTTGGAGGTCTTTGAGAGATGGAGATTTTGAGGAAGAAGATGTTTGGAATGTTTTAAGAGATAGAAAAACTTCAAACACCATGACTGGTAGATCCAAAGAATCCTCAGTTTCTGTTCCGAGACGCCTCCCAACCGCTTCAAGGATGATACCAAGAGCTAGCAGCCACAATTATGGTAGTGGAAGTAGCTGTAGCAGTAGCAACAACACTCATGAAGCCAAAATTGTGCAACAATCTGCACCTGTTCACATTCCCAACTGGAGGCTTGCAAGAAGTCAGATTTCTTCTTTTTCAGTTTGTGAAGGTGCTGGGAGGACCCTAAAAGGGAGGGACCTCAGCAAAGTGAGGAATGCTGTTTTGATAAAAACTGGTTTCCTTGAATCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

142

Amino Acids

15.7

Weight (kDa)

10.19

Isoelectric Point (pI)

56.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 101 - 139 2.3e-17 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 171
AclWI GGATC 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 160
AfiI CCNNNNNNNGG 3 cut(s) 177, 297, 360
AgsI TTSAA 3 cut(s) 111, 177, 416
AjuI GAANNNNNNNTTGG 2 cut(s) 22, 54
AluBI AGCT 2 cut(s) 194, 225
AluI AGCT 2 cut(s) 194, 225
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 1 cut(s) 123
AlwNI CAGNNNCTG 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 198
Asp700I GAANNNNTTC 1 cut(s) 106
AspS9I GGNCC 2 cut(s) 351, 367
AsuNHI GCTAGC 1 cut(s) 194
AvaII GGWCC 2 cut(s) 351, 367
BbvCI CCTCAGC 1 cut(s) 371
BbvI GCAGC 1 cut(s) 210
BccI CCATC 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 226
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
Bme18I GGWCC 2 cut(s) 351, 367
BmgT120I GGNCC 2 cut(s) 351, 367
BmiI GGNNCC 2 cut(s) 353, 368
BmtI GCTAGC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 316
Bpu10I CCTNAGC 1 cut(s) 371
BsaBI GATNNNNATC 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 160
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 3 cut(s) 177, 297, 360
Bse1I ACTGG 3 cut(s) 127, 299, 409
Bse8I GATNNNNATC 1 cut(s) 12
BseGI GGATG 1 cut(s) 186
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 3 cut(s) 177, 297, 360
BseMII CTCAG 2 cut(s) 156, 385
BseNI ACTGG 3 cut(s) 127, 299, 409
BseXI GCAGC 1 cut(s) 210
BseYI CCCAGC 1 cut(s) 344
BsgI GTGCAG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 3 cut(s) 177, 297, 360
BsmAI GTCTC 1 cut(s) 151
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 380
BsmI GAATGC 1 cut(s) 391
Bsp143I GATC 1 cut(s) 128
BspACI CCGC 1 cut(s) 171
BspCNI CTCAG 2 cut(s) 155, 384
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 353, 368
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 1 cut(s) 123
BsrI ACTGG 3 cut(s) 127, 299, 409
BssMI GATC 1 cut(s) 128
BssNI GRCGYC 1 cut(s) 160
BstACI GRCGYC 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 196, 303
BstDEI CTNAG 2 cut(s) 142, 371
BstF5I GGATG 1 cut(s) 186
BstKTI GATC 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 128
BstXI CCANNNNNNTGG 1 cut(s) 209
BstYI RGATCY 1 cut(s) 128
BtsCI GGATG 1 cut(s) 186
Cac8I GCNNGC 2 cut(s) 196, 303
CaiI CAGNNNCTG 1 cut(s) 149
CciI TCATGA 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 351, 367
CseI GACGC 1 cut(s) 168
CviAII CATG 2 cut(s) 118, 248
CviJI RGCY 5 cut(s) 194, 201, 225, 254, 301
CviKI_1 RGCY 5 cut(s) 194, 201, 225, 254, 301
DdeI CTNAG 2 cut(s) 142, 371
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 351, 367
EcoO109I RGGNCCY 2 cut(s) 351, 367
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 2 cut(s) 121, 251
FaiI YATR 3 cut(s) 119, 210, 249
FaqI GGGAC 1 cut(s) 380
FatI CATG 2 cut(s) 117, 247
Fnu4HI GCNGC 1 cut(s) 199
FokI GGATG 1 cut(s) 193
Fsp4HI GCNGC 1 cut(s) 199
FspBI CTAG 1 cut(s) 195
GluI GCNGC 1 cut(s) 199
GsaI CCCAGC 1 cut(s) 348
GsuI CTGGAG 1 cut(s) 316
HgaI GACGC 1 cut(s) 168
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 2 cut(s) 121, 251
HinfI GANTC 2 cut(s) 137, 416
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 2 cut(s) 156, 315
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 332
HpyCH4V TGCA 3 cut(s) 265, 275, 305
HpyF3I CTNAG 2 cut(s) 142, 371
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 2 cut(s) 121, 251
Kzo9I GATC 1 cut(s) 128
LpnPI CCDG 6 cut(s) 11, 108, 280, 291, 330, 390
Lsp1109I GCAGC 1 cut(s) 210
MaeI CTAG 1 cut(s) 195
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 3 cut(s) 83, 86, 312
MflI RGATCY 1 cut(s) 128
MluCI AATT 2 cut(s) 205, 258
MnlI CCTC 9 cut(s) 36, 61, 151, 173, 291, 342, 357, 375, 380
MroXI GAANNNNTTC 1 cut(s) 106
MseI TTAA 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 391
NdeII GATC 1 cut(s) 128
NheI GCTAGC 1 cut(s) 194
NlaIII CATG 2 cut(s) 121, 251
NlaIV GGNNCC 2 cut(s) 353, 368
PagI TCATGA 1 cut(s) 247
PctI GAATGC 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 137, 416
PkrI GCNGC 1 cut(s) 200
PpuMI RGGWCCY 2 cut(s) 351, 367
Psp5II RGGWCCY 2 cut(s) 351, 367
PspFI CCCAGC 1 cut(s) 344
PspN4I GGNNCC 2 cut(s) 353, 368
PspPI GGNCC 2 cut(s) 351, 367
PspPPI RGGWCCY 2 cut(s) 351, 367
PstNI CAGNNNCTG 1 cut(s) 149
PsuI RGATCY 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 1 cut(s) 128
Sau96I GGNCC 2 cut(s) 351, 367
SetI ASST 7 cut(s) 14, 47, 196, 227, 280, 343, 372
SfcI CTRYAG 1 cut(s) 226
SinI GGWCC 2 cut(s) 351, 367
SmiMI CAYNNNNRTG 1 cut(s) 207
Sse9I AATT 2 cut(s) 205, 258
SsiI CCGC 1 cut(s) 171
SspMI CTAG 1 cut(s) 195
TasI AATT 2 cut(s) 205, 258
TfiI GAWTC 2 cut(s) 137, 416
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseI GCWGC 1 cut(s) 198
TspDTI ATGAA 1 cut(s) 264
VpaK11BI GGWCC 2 cut(s) 351, 367
XmnI GAANNNNTTC 1 cut(s) 106
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.