MD05G1347500.v1.1

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0003172
Physical Location & Seq
Forward (+)
46638323 .. 46638916
594 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1347500.v1.1.491

Sequence Viewer

Length: 594 bp
ATGACAGATTGGAGTGGTATGATGAGCAAACCCAGTGGTTTTGGTGGGGGAAGAAGTAATGAAGATTTTGAAGAAGAAGATGTGTGGAGTTTTGTGAAGTCTCATAATAAGAACTCACCTGTTGCTGCTGCTGCTTCTTTTTCTTCTTCGCCTTCGTCCTCCTCTGCATCTGCATGGCGCCTCCCTACTGCTCTAAGAACAATCCCAAGCGCCAATAGTAATCCTCCAGCTGTCCATGAAGTCCAAAAATCTGCTCCTGTGGCAATCCCTGATTGGTCAAAAATTTATGGCAAGAGTGCGAAGATCGGTTCTTCGGTTCATCACCATGATGATGGTGATGTGTATGGTGTCAATGGTGATGGTGATGGTGATGTGTATGGTGTCAATGGTGATGGTAATGGTGATGGTGGTGATAATGATGATGGTGGCGATGATGATGGCTTGGTTCCTCCACATGAATGGGTTGCCAGAAAGCTTGCAAGAAGCCAGATTTCATCATTCTCTGTGTGCGAAGGGATTGGAAGAACACTCAAAGGAAGAGACCTCAGCAAAGTAAGGAATGCCATTTTGACTAAAACTGGTTTTTTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

198

Amino Acids

20.71

Weight (kDa)

5.18

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 21 - 197 3.1e-38 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 177
AcsI RAATTY 1 cut(s) 282
AcyI GRCGYC 1 cut(s) 178
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 2 cut(s) 230, 475
AluI AGCT 2 cut(s) 230, 475
Alw26I GTCTC 2 cut(s) 105, 534
ApeKI GCWGC 3 cut(s) 125, 128, 131
ApoI RAATTY 1 cut(s) 282
AspLEI GCGC 2 cut(s) 180, 212
AsuHPI GGTGA 9 cut(s) 108, 314, 347, 368, 374, 380, 401, 413, 422
BanI GGYRCC 1 cut(s) 177
BbvCI CCTCAGC 1 cut(s) 545
BbvI GCAGC 3 cut(s) 112, 115, 118
BccI CCATC 7 cut(s) 326, 353, 359, 386, 398, 416, 431
BcoDI GTCTC 2 cut(s) 105, 534
BfoI RGCGCY 2 cut(s) 181, 213
BisI GCNGC 3 cut(s) 126, 129, 132
BlsI GCNGC 3 cut(s) 127, 130, 133
BmiI GGNNCC 2 cut(s) 179, 447
BmrI ACTGGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 176
BmuI ACTGGG 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 210
Bpu10I CCTNAGC 1 cut(s) 545
BsaHI GRCGYC 1 cut(s) 178
BsaI GGTCTC 1 cut(s) 534
Bse1I ACTGG 2 cut(s) 33, 583
BseMII CTCAG 1 cut(s) 559
BseNI ACTGG 2 cut(s) 33, 583
BseRI GAGGAG 1 cut(s) 151
BseXI GCAGC 3 cut(s) 112, 115, 118
BshNI GGYRCC 1 cut(s) 177
BsmAI GTCTC 2 cut(s) 105, 534
BsmI GAATGC 1 cut(s) 565
Bso31I GGTCTC 1 cut(s) 534
Bsp143I GATC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 558
BspLI GGNNCC 2 cut(s) 179, 447
BspT107I GGYRCC 1 cut(s) 177
BspTNI GGTCTC 1 cut(s) 534
BsrI ACTGG 2 cut(s) 33, 583
BssMI GATC 1 cut(s) 303
BssNI GRCGYC 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 532
BstACI GRCGYC 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 2 cut(s) 194, 545
BstH2I RGCGCY 2 cut(s) 181, 213
BstHHI GCGC 2 cut(s) 180, 212
BstKTI GATC 1 cut(s) 306
BstMAI GTCTC 2 cut(s) 105, 534
BstMBI GATC 1 cut(s) 303
BstMWI GCNNNNNNNGC 2 cut(s) 131, 260
BstV1I GCAGC 3 cut(s) 112, 115, 118
BstXI CCANNNNNNTGG 2 cut(s) 332, 459
BtgZI GCGATG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 477
CfoI GCGC 2 cut(s) 180, 212
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 4 cut(s) 174, 236, 326, 455
CviJI RGCY 4 cut(s) 230, 441, 475, 486
CviKI_1 RGCY 4 cut(s) 230, 441, 475, 486
DdeI CTNAG 2 cut(s) 194, 545
DinI GGCGCC 1 cut(s) 179
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 532
EarI CTCTTC 1 cut(s) 532
Eco31I GGTCTC 1 cut(s) 534
EgeI GGCGCC 1 cut(s) 179
EheI GGCGCC 1 cut(s) 179
FaeI CATG 4 cut(s) 177, 239, 329, 458
FaiI YATR 9 cut(s) 20, 105, 175, 237, 288, 327, 345, 378, 456
FatI CATG 4 cut(s) 173, 235, 325, 454
Fnu4HI GCNGC 3 cut(s) 126, 129, 132
Fsp4HI GCNGC 3 cut(s) 126, 129, 132
GlaI GCGC 2 cut(s) 179, 211
GluI GCNGC 3 cut(s) 126, 129, 132
GsuI CTGGAG 1 cut(s) 210
HaeII RGCGCY 2 cut(s) 181, 213
HhaI GCGC 2 cut(s) 180, 212
Hin1I GRCGYC 1 cut(s) 178
Hin1II CATG 4 cut(s) 177, 239, 329, 458
Hin6I GCGC 2 cut(s) 178, 210
HinP1I GCGC 2 cut(s) 178, 210
HindIII AAGCTT 1 cut(s) 473
HphI GGTGA 9 cut(s) 108, 314, 347, 368, 374, 380, 401, 413, 422
HpyAV CCTTC 2 cut(s) 162, 506
HpyCH4V TGCA 3 cut(s) 167, 173, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 260
HpyF3I CTNAG 2 cut(s) 194, 545
Hsp92I GRCGYC 1 cut(s) 178
Hsp92II CATG 4 cut(s) 177, 239, 329, 458
HspAI GCGC 2 cut(s) 178, 210
KasI GGCGCC 1 cut(s) 177
Kzo9I GATC 1 cut(s) 303
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 8 cut(s) 46, 132, 240, 270, 282, 481, 500, 564
Lsp1109I GCAGC 3 cut(s) 112, 115, 118
LweI GCATC 1 cut(s) 176
MalI GATC 1 cut(s) 305
MboI GATC 1 cut(s) 303
MluCI AATT 1 cut(s) 282
Mly113I GGCGCC 1 cut(s) 178
MnlI CCTC 6 cut(s) 169, 172, 191, 234, 459, 554
MslI CAYNNNNRTG 5 cut(s) 172, 324, 327, 330, 457
MspA1I CMGCKG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 565
MwoI GCNNNNNNNGC 2 cut(s) 131, 260
NarI GGCGCC 1 cut(s) 178
NdeII GATC 1 cut(s) 303
NlaIII CATG 4 cut(s) 177, 239, 329, 458
NlaIV GGNNCC 2 cut(s) 179, 447
PctI GAATGC 1 cut(s) 565
PkrI GCNGC 3 cut(s) 127, 130, 133
PluTI GGCGCC 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 179, 447
PvuII CAGCTG 1 cut(s) 230
RseI CAYNNNNRTG 5 cut(s) 172, 324, 327, 330, 457
SatI GCNGC 3 cut(s) 126, 129, 132
Sau3AI GATC 1 cut(s) 303
SetI ASST 4 cut(s) 121, 232, 477, 546
SfaNI GCATC 1 cut(s) 176
SfoI GGCGCC 1 cut(s) 179
SmiMI CAYNNNNRTG 5 cut(s) 172, 324, 327, 330, 457
Sse9I AATT 1 cut(s) 282
SspDI GGCGCC 1 cut(s) 177
TasI AATT 1 cut(s) 282
TscAI CASTG 1 cut(s) 40
TseI GCWGC 3 cut(s) 125, 128, 131
TspDTI ATGAA 5 cut(s) 75, 252, 308, 471, 483
TspRI CASTG 1 cut(s) 40
XapI RAATTY 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.