Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004668

Physical Location & Seq

Genomic Coordinates Forward (+)

2682613 .. 2685896

Gene Structure 3284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G05210.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCAAATAGTTTGCGAACATTGTTCTCAGTGTCCACTCATGGTGTCTTTTTGAACAAGCGGTCTAGTTATCGTGTACGCAAGGTGTTTGTTGGAATGCCTCTGAGAATATGCAGTGAAATTCCTAGATTCGTATCAGTTTCGTGTATAAGGTCTGACATGTGTGGTATTATGATGCTTGGGAAAGATGTTCATGATCTATTAGAGACAAGTAGTGGAGGTAATGTTGAGAAAGGTTTTCTAAGATGGCGAAACGGAGGAGGAATGTACCATCGTTCGGCCCTAATTGATTCCTCGGCTCTGGTTGAGTTTGGAGCAGTGGTTCACCAAGAAGCTATATTGGGAGCAGAGGTTCATATAGGATCCAACACTGTAATTGGATCATCAGTCAAAATTGGCCCTTCTACAAAGATCGGCAATTGTAGTATTGGTGATTTATGTGTCATCCATAATGGAGTCTGCATTGGTCAAGATGGATTTGGGTTTTACGTGGATGACAACGGAAACATGGTGAAGAAGCCTCAAACTTTAAATGTGAAGATAGGGAATCGTGTGGAAATCGGAGCAAACACATGCATTGATCGGGGCAGCTGGAGAGATACCGTGATCGGGGATGATACTAAGATAGACAACTTAGTTCAGATAGGTCACAATGTGATTATTGGCAAATGTTGCTTGTTCTGTGGCCAAGTAGGCATAGCTGGATCAGCAGAGATTGGTGACTTTGTAGCACTAGGAGGACGAGTAGCTGTTCGAGACCATGTCTCCATTGTATCCAAGGTTCGACTTGCTGCTAATAGTTGTGTTACTAAAAACATTACGGAACCAGGGGATTACGGCGGTTTTCCTGCTTATAAAAAAACAGAGCCGGACTCTGCTTTTGCTTCCGATAAACATTGTTTCATCTTACAAAAAATTCTTATTCAGGTCCCAATTCATCAATGGAGAAGGCAAATTGTTGAAGCTCAGATTTCGAGCAAGAGGAAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

330

Amino Acids

35.71

Weight (kDa)

8.98

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hexapep	PF00132	206 - 241	4.4e-07	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05210 AT4G05210 AT4G05210 AT4G21220
fragaria_vesca	FvH4_3g02730 FvH4_3g02730 FvH4_3g02730 FvH4_3g02730
malus_domestica	MD05G1340500.v1.1 MD10G1313900.v1.1
prunus_persica	Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1
pyrus_communis	pycom05g30970
rosa_chinensis	RchiOBHm_Chr5g0004131
rosa_laevigata	RLG00000031204 RLG00000031207
rosa_multiflora	Rmu_sc0000547.1_g000033 Rmu_sc0010028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071660 Rroxscaffold_1G00071900
rosa_rugosa	Rorug04G0409900 Rorug04G0410000 Rorug04G0410100
rosa_samantha	Rh5AG037600 Rh5BG036900 Rh5CG040300 Rh5DG036300
rosa_wichuraiana	Rw5G003400 Rw5G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	855
AciI	CCGC	2 cut(s)	61, 840
AclWI	GGATC	4 cut(s)	357, 370, 388, 712
AcoI	YGGCCR	1 cut(s)	685
AcsI	RAATTY	2 cut(s)	120, 915
AdeI	CACNNNGTG	1 cut(s)	655
AfaI	GTAC	2 cut(s)	78, 269
AfiI	CCNNNNNNNGG	2 cut(s)	277, 609
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	2 cut(s)	55, 962
AjnI	CCWGG	1 cut(s)	826
AloI	GAACNNNNNNTCC	4 cut(s)	306, 336, 338, 368
AluBI	AGCT	5 cut(s)	335, 591, 701, 749, 965
AluI	AGCT	5 cut(s)	335, 591, 701, 749, 965
Alw26I	GTCTC	3 cut(s)	200, 750, 769
AlwI	GGATC	4 cut(s)	357, 370, 388, 712
AoxI	GGCC	3 cut(s)	279, 397, 685
ApeKI	GCWGC	2 cut(s)	588, 791
ApoI	RAATTY	2 cut(s)	120, 915
ArsI	GACNNNNNNTTYG	2 cut(s)	863, 895
AspS9I	GGNCC	3 cut(s)	280, 398, 928
AsuHPI	GGTGA	4 cut(s)	317, 443, 523, 731
AvaII	GGWCC	1 cut(s)	928
BalI	TGGCCA	1 cut(s)	687
BamHI	GGATCC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	600, 778
BccI	CCATC	3 cut(s)	240, 279, 467
BceAI	ACGGC	1 cut(s)	853
BciT130I	CCWGG	1 cut(s)	828
BciVI	GTATCC	1 cut(s)	784
BcoDI	GTCTC	3 cut(s)	200, 750, 769
BfaI	CTAG	3 cut(s)	66, 126, 734
BfuI	GTATCC	1 cut(s)	784
BglI	GCCNNNNNGGC	1 cut(s)	693
BisI	GCNGC	2 cut(s)	589, 792
BlsI	GCNGC	2 cut(s)	590, 793
Bme1390I	CCNGG	1 cut(s)	828
Bme18I	GGWCC	1 cut(s)	928
BmgT120I	GGNCC	3 cut(s)	280, 398, 928
BmiI	GGNNCC	3 cut(s)	364, 825, 930
BmrFI	CCNGG	1 cut(s)	828
BmsI	GCATC	1 cut(s)	165
BplI	GAGNNNNNCTC	2 cut(s)	857, 889
BpmI	CTGGAG	1 cut(s)	613
BsaAI	YACGTR	1 cut(s)	490
BsaBI	GATNNNNATC	1 cut(s)	133
BsaI	GGTCTC	1 cut(s)	750
BsaJI	CCNNGG	3 cut(s)	294, 777, 827
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 609
Bse8I	GATNNNNATC	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	828
BseDI	CCNNGG	3 cut(s)	294, 777, 827
BseGI	GGATG	3 cut(s)	444, 499, 619
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	2 cut(s)	277, 609
BseMII	CTCAG	3 cut(s)	42, 95, 980
BseRI	GAGGAG	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	600, 778
BshFI	GGCC	3 cut(s)	281, 399, 687
BsiSI	CCGG	1 cut(s)	869
BslFI	GGGAC	1 cut(s)	914
BslI	CCNNNNNNNGG	2 cut(s)	277, 609
BsmAI	GTCTC	3 cut(s)	200, 750, 769
BsmFI	GGGAC	1 cut(s)	914
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	3 cut(s)	281, 399, 687
Bso31I	GGTCTC	1 cut(s)	750
Bsp143I	GATC	7 cut(s)	196, 362, 380, 411, 580, 606, 704
BspACI	CCGC	2 cut(s)	61, 840
BspANI	GGCC	3 cut(s)	281, 399, 687
BspCNI	CTCAG	3 cut(s)	41, 96, 979
BspHI	TCATGA	1 cut(s)	193
BspLI	GGNNCC	3 cut(s)	364, 825, 930
BspPI	GGATC	4 cut(s)	357, 370, 388, 712
BspTNI	GGTCTC	1 cut(s)	750
BssECI	CCNNGG	3 cut(s)	294, 777, 827
BssMI	GATC	7 cut(s)	196, 362, 380, 411, 580, 606, 704
BssT1I	CCWWGG	1 cut(s)	777
Bst2UI	CCWGG	1 cut(s)	828
Bst4CI	ACNGT	2 cut(s)	373, 604
BstAPI	GCANNNNNTGC	1 cut(s)	672
BstBAI	YACGTR	1 cut(s)	490
BstDEI	CTNAG	6 cut(s)	28, 104, 242, 621, 634, 966
BstF5I	GGATG	3 cut(s)	444, 499, 619
BstKTI	GATC	7 cut(s)	199, 365, 383, 414, 583, 609, 707
BstMAI	GTCTC	3 cut(s)	200, 750, 769
BstMBI	GATC	7 cut(s)	196, 362, 380, 411, 580, 606, 704
BstMWI	GCNNNNNNNGC	3 cut(s)	672, 693, 707
BstNI	CCWGG	1 cut(s)	828
BstNSI	RCATGY	2 cut(s)	163, 576
BstSCI	CCNGG	1 cut(s)	826
BstV1I	GCAGC	2 cut(s)	600, 778
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BsuI	GTATCC	1 cut(s)	784
BsuRI	GGCC	3 cut(s)	281, 399, 687
BtsCI	GGATG	3 cut(s)	444, 499, 619
BtsI	GCAGTG	2 cut(s)	121, 324
BtsIMutI	CAGTG	4 cut(s)	36, 121, 324, 369
CciI	TCATGA	1 cut(s)	193
Cfr13I	GGNCC	3 cut(s)	280, 398, 928
Csp6I	GTAC	2 cut(s)	77, 268
CviAII	CATG	6 cut(s)	41, 160, 194, 508, 573, 761
CviQI	GTAC	2 cut(s)	77, 268
DdeI	CTNAG	6 cut(s)	28, 104, 242, 621, 634, 966
DpnI	GATC	7 cut(s)	198, 364, 382, 413, 582, 608, 706
DpnII	GATC	7 cut(s)	196, 362, 380, 411, 580, 606, 704
DraI	TTTAAA	1 cut(s)	531
DraIII	CACNNNGTG	1 cut(s)	655
EaeI	YGGCCR	1 cut(s)	685
Eco130I	CCWWGG	1 cut(s)	777
Eco31I	GGTCTC	1 cut(s)	750
Eco47I	GGWCC	1 cut(s)	928
EcoO109I	RGGNCCY	1 cut(s)	928
EcoRII	CCWGG	1 cut(s)	826
EcoT14I	CCWWGG	1 cut(s)	777
EcoT22I	ATGCAT	1 cut(s)	578
ErhI	CCWWGG	1 cut(s)	777
FaeI	CATG	6 cut(s)	44, 163, 197, 511, 576, 764
FaqI	GGGAC	1 cut(s)	914
FatI	CATG	6 cut(s)	40, 159, 193, 507, 572, 760
Fnu4HI	GCNGC	2 cut(s)	589, 792
FokI	GGATG	3 cut(s)	431, 506, 626
Fsp4HI	GCNGC	2 cut(s)	589, 792
FspBI	CTAG	3 cut(s)	66, 126, 734
GluI	GCNGC	2 cut(s)	589, 792
GsuI	CTGGAG	1 cut(s)	613
HaeIII	GGCC	3 cut(s)	281, 399, 687
HapII	CCGG	1 cut(s)	869
Hin1II	CATG	6 cut(s)	44, 163, 197, 511, 576, 764
HinfI	GANTC	5 cut(s)	129, 290, 456, 547, 872
HpaII	CCGG	1 cut(s)	869
HphI	GGTGA	4 cut(s)	317, 443, 523, 731
Hpy166II	GTNNAC	3 cut(s)	36, 77, 325
Hpy188I	TCNGA	6 cut(s)	105, 157, 563, 642, 889, 969
Hpy188III	TCNNGA	3 cut(s)	194, 470, 755
Hpy8I	GTNNAC	3 cut(s)	36, 77, 325
HpyAV	CCTTC	2 cut(s)	411, 942
HpyCH4III	ACNGT	2 cut(s)	373, 604
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	3 cut(s)	114, 462, 576
HpyF10VI	GCNNNNNNNGC	3 cut(s)	672, 693, 707
HpyF3I	CTNAG	6 cut(s)	28, 104, 242, 621, 634, 966
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	6 cut(s)	44, 163, 197, 511, 576, 764
Kzo9I	GATC	7 cut(s)	196, 362, 380, 411, 580, 606, 704
LmnI	GCTCC	3 cut(s)	314, 344, 563
LpnPI	CCDG	8 cut(s)	287, 577, 687, 813, 840, 861, 882, 911
Lsp1109I	GCAGC	2 cut(s)	600, 778
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	3 cut(s)	66, 126, 734
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	3 cut(s)	647, 719, 805
MalI	GATC	7 cut(s)	198, 364, 382, 413, 582, 608, 706
MboI	GATC	7 cut(s)	196, 362, 380, 411, 580, 606, 704
MboII	GAAGA	2 cut(s)	526, 550
MfeI	CAATTG	1 cut(s)	418
MflI	RGATCY	1 cut(s)	362
MlsI	TGGCCA	1 cut(s)	687
MluCI	AATT	8 cut(s)	120, 285, 375, 393, 418, 915, 933, 954
MluNI	TGGCCA	1 cut(s)	687
MlyI	GAGTC	2 cut(s)	465, 866
MmeI	TCCRAC	2 cut(s)	73, 390
MnlI	CCTC	9 cut(s)	111, 212, 251, 254, 304, 343, 531, 731, 975
Mox20I	TGGCCA	1 cut(s)	687
Mph1103I	ATGCAT	1 cut(s)	578
MscI	TGGCCA	1 cut(s)	687
MseI	TTAA	1 cut(s)	530
Msp20I	TGGCCA	1 cut(s)	687
MspA1I	CMGCKG	1 cut(s)	591
MspI	CCGG	1 cut(s)	869
MspR9I	CCNGG	1 cut(s)	828
MunI	CAATTG	1 cut(s)	418
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	828
MwoI	GCNNNNNNNGC	3 cut(s)	672, 693, 707
NdeII	GATC	7 cut(s)	196, 362, 380, 411, 580, 606, 704
NlaIII	CATG	6 cut(s)	44, 163, 197, 511, 576, 764
NlaIV	GGNNCC	3 cut(s)	364, 825, 930
NmeAIII	GCCGAG	1 cut(s)	275
NmuCI	GTSAC	2 cut(s)	647, 719
NsiI	ATGCAT	1 cut(s)	578
NspI	RCATGY	2 cut(s)	163, 576
PagI	TCATGA	1 cut(s)	193
PciI	ACATGT	1 cut(s)	159
PctI	GAATGC	1 cut(s)	102
PfeI	GAWTC	3 cut(s)	129, 290, 547
PflFI	GACNNNGTC	1 cut(s)	761
PkrI	GCNGC	2 cut(s)	590, 793
PleI	GAGTC	2 cut(s)	464, 866
PpsI	GAGTC	2 cut(s)	464, 866
Ppu21I	YACGTR	1 cut(s)	490
PpuMI	RGGWCCY	1 cut(s)	928
PscI	ACATGT	1 cut(s)	159
PsiI	TTATAA	1 cut(s)	855
Psp5II	RGGWCCY	1 cut(s)	928
Psp6I	CCWGG	1 cut(s)	826
PspGI	CCWGG	1 cut(s)	826
PspN4I	GGNNCC	3 cut(s)	364, 825, 930
PspPI	GGNCC	3 cut(s)	280, 398, 928
PspPPI	RGGWCCY	1 cut(s)	928
PsrI	GAACNNNNNNTAC	2 cut(s)	765, 797
PsuI	RGATCY	1 cut(s)	362
PsyI	GACNNNGTC	1 cut(s)	761
PvuII	CAGCTG	1 cut(s)	591
RsaI	GTAC	2 cut(s)	78, 269
RsaNI	GTAC	2 cut(s)	77, 268
SaqAI	TTAA	1 cut(s)	530
SatI	GCNGC	2 cut(s)	589, 792
Sau3AI	GATC	7 cut(s)	196, 362, 380, 411, 580, 606, 704
Sau96I	GGNCC	3 cut(s)	280, 398, 928
SchI	GAGTC	2 cut(s)	465, 866
ScrFI	CCNGG	1 cut(s)	828
SfaNI	GCATC	1 cut(s)	165
SinI	GGWCC	1 cut(s)	928
Sse9I	AATT	8 cut(s)	120, 285, 375, 393, 418, 915, 933, 954
SsiI	CCGC	2 cut(s)	61, 840
SspMI	CTAG	3 cut(s)	66, 126, 734
StyD4I	CCNGG	1 cut(s)	826
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	2 cut(s)	373, 604
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	3 cut(s)	754, 784, 974
TasI	AATT	8 cut(s)	120, 285, 375, 393, 418, 915, 933, 954
TfiI	GAWTC	3 cut(s)	129, 290, 547
Tru1I	TTAA	1 cut(s)	530
Tru9I	TTAA	1 cut(s)	530
TscAI	CASTG	4 cut(s)	36, 121, 324, 376
TseFI	GTSAC	2 cut(s)	647, 719
TseI	GCWGC	2 cut(s)	588, 791
Tsp45I	GTSAC	2 cut(s)	647, 719
TspDTI	ATGAA	4 cut(s)	182, 344, 892, 926
TspGWI	ACGGA	3 cut(s)	270, 516, 836
TspRI	CASTG	4 cut(s)	36, 121, 324, 376
Tth111I	GACNNNGTC	1 cut(s)	761
VpaK11BI	GGWCC	1 cut(s)	928
XapI	RAATTY	2 cut(s)	120, 915
XceI	RCATGY	2 cut(s)	163, 576
XcmI	CCANNNNNNNNNTGG	1 cut(s)	939
XspI	CTAG	3 cut(s)	66, 126, 734
Zsp2I	ATGCAT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.