Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004668

Physical Location & Seq

Genomic Coordinates Forward (+)

57256432 .. 57257270

Gene Structure 839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0409900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTTCTTGATTCCGGCAACGAGGCAGTGGCCGTACGAGCGGCCGCGCGTGCCTTAGTCGAAGGCCTTGACGATGATCCCCTTGCAGCCGCCGTAGTGACCTTGGAGGAGGATGGAGAGGAGGTTCAGACTGAGCTGACCGGTCCGAAGAAGGTGAGCGACGGTGCTAAACAAGTGGAGTTGAACAGGAAGCAAAGCCGGGTGACGGTGACAGGTTATGTGGAACCATACAAGGTGTTGAAGAAGGTGAAGAGCACCGGAAAGAAAGCCGAGATTTGGCCCTACATTCCATATAACCTCGTTGCATACCCTTTTTTTTTTTTTTTTGAGAAAAAAGGTGGTGCGGCAGCCCTCAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

120

Amino Acids

13.07

Weight (kDa)

6.32

Isoelectric Point (pI)

21.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05210 AT4G05210 AT4G05210 AT4G21220
fragaria_vesca	FvH4_3g02730 FvH4_3g02730 FvH4_3g02730 FvH4_3g02730
malus_domestica	MD05G1340500.v1.1 MD10G1313900.v1.1
prunus_persica	Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1
pyrus_communis	pycom05g30970
rosa_chinensis	RchiOBHm_Chr5g0004131
rosa_laevigata	RLG00000031204 RLG00000031207
rosa_multiflora	Rmu_sc0000547.1_g000033 Rmu_sc0010028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071660 Rroxscaffold_1G00071900
rosa_rugosa	Rorug04G0409900 Rorug04G0410000 Rorug04G0410100
rosa_samantha	Rh5AG037600 Rh5BG036900 Rh5CG040300 Rh5DG036300
rosa_wichuraiana	Rw5G003400 Rw5G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	41
AccII	CGCG	2 cut(s)	47, 49
AciI	CCGC	4 cut(s)	41, 45, 90, 344
AclWI	GGATC	1 cut(s)	71
AcoI	YGGCCR	2 cut(s)	30, 42
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	205, 276
AgeI	ACCGGT	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	184, 241
AloI	GAACNNNNNNTCC	2 cut(s)	108, 140
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw21I	GWGCWC	1 cut(s)	257
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	4 cut(s)	30, 42, 64, 278
ApeKI	GCWGC	2 cut(s)	86, 347
AsiGI	ACCGGT	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	143, 279
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	4 cut(s)	166, 214, 220, 259
AvaII	GGWCC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	98, 359
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	2 cut(s)	17, 77
BcnI	CCSGG	1 cut(s)	200
BisI	GCNGC	6 cut(s)	42, 45, 87, 90, 345, 348
BlsI	GCNGC	6 cut(s)	43, 46, 88, 91, 346, 349
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	2 cut(s)	143, 279
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	102
BsaWI	WCCGGW	2 cut(s)	140, 257
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 276
Bse118I	RCCGGY	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	205, 276
BseMII	CTCAG	1 cut(s)	123
BseRI	GAGGAG	2 cut(s)	122, 134
BseX3I	CGGCCG	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	98, 359
Bsh1236I	CGCG	2 cut(s)	47, 49
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	4 cut(s)	32, 44, 66, 280
BshTI	ACCGGT	1 cut(s)	140
BsiEI	CGRYCG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	257
BsiSI	CCGG	4 cut(s)	15, 141, 199, 258
BsiWI	CGTACG	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	205, 276
BsnI	GGCC	4 cut(s)	32, 44, 66, 280
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	4 cut(s)	41, 45, 90, 344
BspANI	GGCC	4 cut(s)	32, 44, 66, 280
BspCNI	CTCAG	1 cut(s)	124
BspFNI	CGCG	2 cut(s)	47, 49
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	1 cut(s)	71
BspQI	GCTCTTC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	164, 208
Bst6I	CTCTTC	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	2 cut(s)	55, 132
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	2 cut(s)	47, 49
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 50
BstSCI	CCNGG	1 cut(s)	198
BstUI	CGCG	2 cut(s)	47, 49
BstV1I	GCAGC	2 cut(s)	98, 359
BstZI	CGGCCG	1 cut(s)	42
BsuRI	GGCC	4 cut(s)	32, 44, 66, 280
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	51
CciNI	GCGGCCGC	1 cut(s)	42
CfoI	GCGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	143, 279
CpoI	CGGWCCG	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	35
CspAI	ACCGGT	1 cut(s)	140
CspI	CGGWCCG	1 cut(s)	143
CviQI	GTAC	1 cut(s)	35
DdeI	CTNAG	2 cut(s)	55, 132
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
EaeI	YGGCCR	2 cut(s)	30, 42
EagI	CGGCCG	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EclXI	CGGCCG	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	102
Eco147I	AGGCCT	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	143
Eco52I	CGGCCG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaiI	YATR	5 cut(s)	219, 229, 292, 294, 307
Fnu4HI	GCNGC	6 cut(s)	42, 45, 87, 90, 345, 348
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	6 cut(s)	42, 45, 87, 90, 345, 348
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	6 cut(s)	42, 45, 87, 90, 345, 348
HaeIII	GGCC	4 cut(s)	32, 44, 66, 280
HapII	CCGG	4 cut(s)	15, 141, 199, 258
HhaI	GCGC	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	4 cut(s)	15, 141, 199, 258
HphI	GGTGA	4 cut(s)	166, 214, 220, 259
Hpy188I	TCNGA	2 cut(s)	129, 147
Hpy188III	TCNNGA	1 cut(s)	8
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	3 cut(s)	56, 145, 238
HpyCH4III	ACNGT	2 cut(s)	164, 208
HpyCH4V	TGCA	2 cut(s)	86, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 50
HpyF3I	CTNAG	2 cut(s)	55, 132
HspAI	GCGC	1 cut(s)	47
Kzo9I	GATC	1 cut(s)	76
LguI	GCTCTTC	1 cut(s)	245
LpnPI	CCDG	6 cut(s)	28, 154, 172, 198, 212, 271
Lsp1109I	GCAGC	2 cut(s)	98, 359
MaeIII	GTNAC	3 cut(s)	97, 202, 208
MalI	GATC	1 cut(s)	78
MbiI	CCGCTC	1 cut(s)	41
MboI	GATC	1 cut(s)	76
MboII	GAAGA	3 cut(s)	160, 253, 262
MhlI	GDGCHC	1 cut(s)	257
MnlI	CCTC	7 cut(s)	16, 100, 103, 112, 115, 308, 362
MspI	CCGG	4 cut(s)	15, 141, 199, 258
MspR9I	CCNGG	1 cut(s)	200
MvnI	CGCG	2 cut(s)	47, 49
MwoI	GCNNNNNNNGC	2 cut(s)	38, 50
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	225
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	3 cut(s)	97, 202, 208
NotI	GCGGCCGC	1 cut(s)	42
PceI	AGGCCT	1 cut(s)	66
PciSI	GCTCTTC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	11
Pfl23II	CGTACG	1 cut(s)	34
PinAI	ACCGGT	1 cut(s)	140
PkrI	GCNGC	6 cut(s)	43, 46, 88, 91, 346, 349
PspLI	CGTACG	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	2 cut(s)	143, 279
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
Rsr2I	CGGWCCG	1 cut(s)	143
RsrII	CGGWCCG	1 cut(s)	143
SapI	GCTCTTC	1 cut(s)	245
SatI	GCNGC	6 cut(s)	42, 45, 87, 90, 345, 348
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	2 cut(s)	143, 279
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	9 cut(s)	104, 126, 138, 156, 217, 237, 249, 300, 340
SinI	GGWCC	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	4 cut(s)	41, 45, 90, 344
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	164, 208
TaqI	TCGA	1 cut(s)	60
TauI	GCSGC	4 cut(s)	44, 47, 92, 347
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	3 cut(s)	97, 202, 208
TseI	GCWGC	2 cut(s)	86, 347
Tsp45I	GTSAC	3 cut(s)	97, 202, 208
TspRI	CASTG	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.