Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004668

Physical Location & Seq

Genomic Coordinates Reverse (-)

11316828 .. 11319137

Gene Structure 2310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCGGCTACTCTTTGGAGATTATACTCCAAATCTATATGTAATTCTCTTCAAGGAATCATCTTGAACAAACCCTTTATCCAGAAACAGCTTCTTCTTTCTTCGAGAACTCGAAGTTTATCTTTTTCCTCAGATTCTCAGTTTGGCTCTGCGACAGCTGAGGTTTGTTCAAATACAGGGTTAAAGACCGGTGGTGGTATTATTGTTAAGGAAGGATTTCTTAGATGGGAAAATGGAGGAGGGACATGTCATAGCTCGGCTCAAATTTATTCCTCGGCTTTGGTTGAGTTTGGTGCAGTGGTTCATGAAAAAGCGGTCTTAGGTGCAGAGGTTCATGTAGGATCTGGTACTGTGATTGGACCATCAGTTGACATTGGTCCTTCCACAAGAATCGGATATAATGTTTCAATCAGCAACTGTAGTATTGGTGATTCTTGTGTTATCCACAATGGAGTCTGCATAGGTCAAGATGGCTTTGGTTTCTACGTTGATGAACATGGAAACATGGTGAAGAAGCCTCAAACTTTAAACGTAAAGATAGGGAATCGTGTCGAAATCGGAGCAAATACTTGCATTGATCGAGGCAGCTGGAGAGAAACAGTGATCGAAGATGATACTAAGATAGACAATTTAGTGCAGATAGGCCACAATGTGATCATAGGAAAGTGTTGCTTGCTTTGTGGTCAAGTAGGCATCGCTGGTTCAGTAACGATTGGTGACTATGTGGCTTTAGGAGGACGAGCTGCTGTTCGAGACCATGTCTCCATTGTATCCAAGGTTCGACTTGCAGCTAATAGTTGTGTTACTAGAAACATCACTGAACCAGGAGATTTTGGAGGCTTTCCTGCTGTACCAATTCACGAATGGAGAAAGCAGATTGTTCGAGCTCAGATTGCGAACAAGAGAGAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

304

Amino Acids

32.33

Weight (kDa)

8.47

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LbH_EIF2B	PF25084	96 - 154	1.2e-06	EIF2B subunit epsilon LbH domain
GMPPB_C	PF25087	104 - 154	5.3e-06	GMPPB C-terminal domain
Hexapep	PF00132	200 - 234	1.3e-06	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05210 AT4G05210 AT4G05210 AT4G21220
fragaria_vesca	FvH4_3g02730 FvH4_3g02730 FvH4_3g02730 FvH4_3g02730
malus_domestica	MD05G1340500.v1.1 MD10G1313900.v1.1
prunus_persica	Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1
pyrus_communis	pycom05g30970
rosa_chinensis	RchiOBHm_Chr5g0004131
rosa_laevigata	RLG00000031204 RLG00000031207
rosa_multiflora	Rmu_sc0000547.1_g000033 Rmu_sc0010028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071660 Rroxscaffold_1G00071900
rosa_rugosa	Rorug04G0409900 Rorug04G0410000 Rorug04G0410100
rosa_samantha	Rh5AG037600 Rh5BG036900 Rh5CG040300 Rh5DG036300
rosa_wichuraiana	Rw5G003400 Rw5G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 314
AclWI	GGATC	1 cut(s)	349
AcsI	RAATTY	1 cut(s)	264
AdeI	CACNNNGTG	1 cut(s)	652
AfaI	GTAC	2 cut(s)	349, 852
AflIII	ACRYGT	1 cut(s)	245
AgeI	ACCGGT	1 cut(s)	188
AgsI	TTSAA	4 cut(s)	53, 67, 171, 408
AjnI	CCWGG	1 cut(s)	823
AluBI	AGCT	7 cut(s)	91, 158, 255, 588, 743, 791, 887
AluI	AGCT	7 cut(s)	91, 158, 255, 588, 743, 791, 887
Alw21I	GWGCWC	1 cut(s)	889
Alw26I	GTCTC	2 cut(s)	747, 766
AlwI	GGATC	1 cut(s)	349
AlwNI	CAGNNNCTG	1 cut(s)	417
AoxI	GGCC	1 cut(s)	643
ApeKI	GCWGC	3 cut(s)	585, 743, 788
ApoI	RAATTY	1 cut(s)	264
AsiGI	ACCGGT	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	359, 377
AsuHPI	GGTGA	3 cut(s)	440, 520, 728
AvaII	GGWCC	2 cut(s)	359, 377
BanII	GRGCYC	1 cut(s)	889
Bbv12I	GWGCWC	1 cut(s)	889
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	3 cut(s)	597, 730, 800
BccI	CCATC	3 cut(s)	219, 370, 464
BcgI	CGANNNNNNTGC	2 cut(s)	863, 897
BciT130I	CCWGG	1 cut(s)	825
BciVI	GTATCC	1 cut(s)	781
BclI	TGATCA	1 cut(s)	654
BcoDI	GTCTC	2 cut(s)	747, 766
BfaI	CTAG	1 cut(s)	807
BfmI	CTRYAG	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	781
BisI	GCNGC	4 cut(s)	6, 586, 744, 789
BlsI	GCNGC	4 cut(s)	7, 587, 745, 790
Bme1390I	CCNGG	1 cut(s)	825
Bme18I	GGWCC	2 cut(s)	359, 377
BmgT120I	GGNCC	2 cut(s)	359, 377
BmrFI	CCNGG	1 cut(s)	825
BmsI	GCATC	1 cut(s)	702
BoxI	GACNNNNGTC	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	610
Bpu10I	CCTNAGC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	747
BsaJI	CCNNGG	2 cut(s)	273, 774
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	746, 776
Bse118I	RCCGGY	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	825
BseDI	CCNNGG	2 cut(s)	273, 774
BseMII	CTCAG	4 cut(s)	144, 150, 152, 902
BseRI	GAGGAG	1 cut(s)	252
BseXI	GCAGC	3 cut(s)	597, 730, 800
BsgI	GTGCAG	3 cut(s)	315, 345, 656
BshFI	GGCC	1 cut(s)	645
BshTI	ACCGGT	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	889
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	256
BsmAI	GTCTC	2 cut(s)	747, 766
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	645
Bso31I	GGTCTC	1 cut(s)	747
Bsp1286I	GDGCHC	1 cut(s)	889
Bsp143I	GATC	4 cut(s)	341, 577, 603, 654
BspACI	CCGC	2 cut(s)	5, 314
BspANI	GGCC	1 cut(s)	645
BspCNI	CTCAG	4 cut(s)	143, 151, 151, 901
BspHI	TCATGA	1 cut(s)	304
BspPI	GGATC	1 cut(s)	349
BspTNI	GGTCTC	1 cut(s)	747
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	273, 774
BssMI	GATC	4 cut(s)	341, 577, 603, 654
BssT1I	CCWWGG	1 cut(s)	774
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	3 cut(s)	352, 419, 601
Bst6I	CTCTTC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	674
BstDEI	CTNAG	7 cut(s)	130, 138, 159, 221, 319, 618, 888
BstKTI	GATC	4 cut(s)	344, 580, 606, 657
BstMAI	GTCTC	2 cut(s)	747, 766
BstMBI	GATC	4 cut(s)	341, 577, 603, 654
BstMWI	GCNNNNNNNGC	1 cut(s)	893
BstNI	CCWGG	1 cut(s)	825
BstNSI	RCATGY	1 cut(s)	249
BstPAI	GACNNNNGTC	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	823
BstSFI	CTRYAG	1 cut(s)	418
BstV1I	GCAGC	3 cut(s)	597, 730, 800
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BsuI	GTATCC	1 cut(s)	781
BsuRI	GGCC	1 cut(s)	645
BtgZI	GCGATG	1 cut(s)	679
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	3 cut(s)	303, 606, 816
Cac8I	GCNNGC	1 cut(s)	674
CaiI	CAGNNNCTG	1 cut(s)	417
CciI	TCATGA	1 cut(s)	304
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	359, 377
Csp6I	GTAC	2 cut(s)	348, 851
CspAI	ACCGGT	1 cut(s)	188
CviAII	CATG	6 cut(s)	246, 305, 335, 497, 505, 758
CviQI	GTAC	2 cut(s)	348, 851
DdeI	CTNAG	7 cut(s)	130, 138, 159, 221, 319, 618, 888
DpnI	GATC	4 cut(s)	343, 579, 605, 656
DpnII	GATC	4 cut(s)	341, 577, 603, 654
DraI	TTTAAA	1 cut(s)	528
DraIII	CACNNNGTG	1 cut(s)	652
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	887
Eco130I	CCWWGG	1 cut(s)	774
Eco24I	GRGCYC	1 cut(s)	889
Eco31I	GGTCTC	1 cut(s)	747
Eco47I	GGWCC	2 cut(s)	359, 377
Eco53kI	GAGCTC	1 cut(s)	887
EcoICRI	GAGCTC	1 cut(s)	887
EcoRII	CCWGG	1 cut(s)	823
EcoT14I	CCWWGG	1 cut(s)	774
EcoT38I	GRGCYC	1 cut(s)	889
ErhI	CCWWGG	1 cut(s)	774
FaeI	CATG	6 cut(s)	249, 308, 338, 500, 508, 761
FalI	AAGNNNNNCTT	6 cut(s)	106, 138, 204, 236, 656, 688
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	6 cut(s)	245, 304, 334, 496, 504, 757
FbaI	TGATCA	1 cut(s)	654
Fnu4HI	GCNGC	4 cut(s)	6, 586, 744, 789
FriOI	GRGCYC	1 cut(s)	889
Fsp4HI	GCNGC	4 cut(s)	6, 586, 744, 789
FspBI	CTAG	1 cut(s)	807
GluI	GCNGC	4 cut(s)	6, 586, 744, 789
GsuI	CTGGAG	1 cut(s)	610
HaeIII	GGCC	1 cut(s)	645
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	6 cut(s)	249, 308, 338, 500, 508, 761
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	6 cut(s)	57, 134, 390, 431, 453, 544
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	3 cut(s)	440, 520, 728
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	5 cut(s)	133, 395, 560, 891, 914
Hpy188III	TCNNGA	7 cut(s)	64, 82, 105, 305, 467, 752, 860
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	2 cut(s)	206, 390
HpyCH4III	ACNGT	3 cut(s)	352, 419, 601
HpyCH4IV	ACGT	2 cut(s)	486, 531
HpyCH4V	TGCA	6 cut(s)	296, 326, 459, 573, 637, 788
HpyF10VI	GCNNNNNNNGC	1 cut(s)	893
HpyF3I	CTNAG	7 cut(s)	130, 138, 159, 221, 319, 618, 888
HpySE526I	ACGT	2 cut(s)	486, 531
Hsp92II	CATG	6 cut(s)	249, 308, 338, 500, 508, 761
Ksp22I	TGATCA	1 cut(s)	654
Kzo9I	GATC	4 cut(s)	341, 577, 603, 654
LmnI	GCTCC	1 cut(s)	560
LpnPI	CCDG	9 cut(s)	95, 162, 202, 330, 574, 684, 810, 837, 858
Lsp1109I	GCAGC	3 cut(s)	597, 730, 800
LweI	GCATC	1 cut(s)	702
MaeI	CTAG	1 cut(s)	807
MaeII	ACGT	2 cut(s)	486, 531
MaeIII	GTNAC	3 cut(s)	706, 716, 802
MalI	GATC	4 cut(s)	343, 579, 605, 656
MboI	GATC	4 cut(s)	341, 577, 603, 654
MboII	GAAGA	5 cut(s)	41, 86, 93, 523, 620
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	889
MluCI	AATT	4 cut(s)	43, 264, 628, 855
MlyI	GAGTC	1 cut(s)	462
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	3 cut(s)	182, 207, 527
MspA1I	CMGCKG	2 cut(s)	158, 588
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	825
MvaI	CCWGG	1 cut(s)	825
MwoI	GCNNNNNNNGC	1 cut(s)	893
NdeII	GATC	4 cut(s)	341, 577, 603, 654
NlaIII	CATG	6 cut(s)	249, 308, 338, 500, 508, 761
NmeAIII	GCCGAG	2 cut(s)	236, 254
NmuCI	GTSAC	1 cut(s)	716
NspI	RCATGY	1 cut(s)	249
PagI	TCATGA	1 cut(s)	304
PciI	ACATGT	1 cut(s)	245
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	5 cut(s)	57, 134, 390, 431, 544
PflFI	GACNNNGTC	1 cut(s)	758
PinAI	ACCGGT	1 cut(s)	188
PkrI	GCNGC	4 cut(s)	7, 587, 745, 790
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
PscI	ACATGT	1 cut(s)	245
PshAI	GACNNNNGTC	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	889
Psp6I	CCWGG	1 cut(s)	823
PspGI	CCWGG	1 cut(s)	823
PspPI	GGNCC	2 cut(s)	359, 377
PsrI	GAACNNNNNNTAC	2 cut(s)	762, 794
PstNI	CAGNNNCTG	1 cut(s)	417
PsuI	RGATCY	1 cut(s)	341
PsyI	GACNNNGTC	1 cut(s)	758
PvuII	CAGCTG	2 cut(s)	158, 588
RsaI	GTAC	2 cut(s)	349, 852
RsaNI	GTAC	2 cut(s)	348, 851
SacI	GAGCTC	1 cut(s)	889
SaqAI	TTAA	3 cut(s)	182, 207, 527
SatI	GCNGC	4 cut(s)	6, 586, 744, 789
Sau3AI	GATC	4 cut(s)	341, 577, 603, 654
Sau96I	GGNCC	2 cut(s)	359, 377
SchI	GAGTC	1 cut(s)	462
ScrFI	CCNGG	1 cut(s)	825
SduI	GDGCHC	1 cut(s)	889
SfaNI	GCATC	1 cut(s)	702
SfcI	CTRYAG	1 cut(s)	418
SinI	GGWCC	2 cut(s)	359, 377
Sse9I	AATT	4 cut(s)	43, 264, 628, 855
SsiI	CCGC	2 cut(s)	5, 314
SspMI	CTAG	1 cut(s)	807
SstI	GAGCTC	1 cut(s)	889
StyD4I	CCNGG	1 cut(s)	823
StyI	CCWWGG	1 cut(s)	774
TaaI	ACNGT	3 cut(s)	352, 419, 601
TaiI	ACGT	2 cut(s)	489, 534
TaqI	TCGA	8 cut(s)	104, 112, 552, 580, 606, 751, 781, 883
TasI	AATT	4 cut(s)	43, 264, 628, 855
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	5 cut(s)	57, 134, 390, 431, 544
Tru1I	TTAA	3 cut(s)	182, 207, 527
Tru9I	TTAA	3 cut(s)	182, 207, 527
TscAI	CASTG	3 cut(s)	303, 606, 823
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	3 cut(s)	585, 743, 788
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	4 cut(s)	293, 321, 323, 507
TspRI	CASTG	3 cut(s)	303, 606, 823
Tth111I	GACNNNGTC	1 cut(s)	758
VpaK11BI	GGWCC	2 cut(s)	359, 377
XapI	RAATTY	1 cut(s)	264
XceI	RCATGY	1 cut(s)	249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	861
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.