Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004668

Physical Location & Seq

Genomic Coordinates Reverse (-)

1255928 .. 1258763

Gene Structure 2836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G027100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCACTCGCTCTTAGAAGATTTGCAGCTTCATTCGGCTACCCGCCACATTTCCAATGCGTTCGAGCCTTGTCTCCGTTGCGCTTTGCAAATAGTTGCAGTTCCTTCGTGTCGTGTGACTCGTCCGAGGACGGCGTTGGCGCTGATCATCCAGAATTCCGAAAGTGGCATAATGGCGGTGGGTCGTTCCACAAGTCTGCCTGCATTGACCCAACAGTTTTCATTGAGTTTGGTGCTGTTGTTCATTCAAAATCTGTGGTGGGCGAGCACTCTCATATTGGTTCTGGAGCTGTCGTTGGACCTTGTGTTACAATTGGGCAATCAACAAAAATAGGCTACAATGTTGCACTCAGTAATTGCAGTATAGGAGATTCGTGTATAATCCACAATGGCGTATGCATCGGTCAAGATGGATTTGGATTTACGGTGGATGAGCATGGGAATATGTTAAAGAAGCCTCAAATGCTGAATGCTAGGGTAGGGAACTATGTGGAGATTGGTGCAAATACATGCATTGACAGGGGCAGTTGGAGAGAAACGGTTGTAGGGGATCATTCCAAGATAGATAATTTAGTTCAGATCGGTCATAATGTAGTTATTGGGAAGAGTTGCATGCTTTGTGGACAAGTTGGGATTGCAGGCTCAGTGACGATAGGAGACTATGTAACTATGGGGGGAAGGGTAGCAGTTCGTGACCATGTCTCCATTGTATCAAAGGTACGACTTGCCGCTACTAGCTGTGTCACGAAAGATATTACAGAACCTGGAGATTATGGCGGCTTCCCAGCTGTTCCGGTCCATGAGTGGCGAAGACAAGTTGCAAACTACTGTCGAACATCAAAAAAGCTGAACCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

286

Amino Acids

30.43

Weight (kDa)

8.41

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05210 AT4G05210 AT4G05210 AT4G21220
fragaria_vesca	FvH4_3g02730 FvH4_3g02730 FvH4_3g02730 FvH4_3g02730
malus_domestica	MD05G1340500.v1.1 MD10G1313900.v1.1
prunus_persica	Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1
pyrus_communis	pycom05g30970
rosa_chinensis	RchiOBHm_Chr5g0004131
rosa_laevigata	RLG00000031204 RLG00000031207
rosa_multiflora	Rmu_sc0000547.1_g000033 Rmu_sc0010028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071660 Rroxscaffold_1G00071900
rosa_rugosa	Rorug04G0409900 Rorug04G0410000 Rorug04G0410100
rosa_samantha	Rh5AG037600 Rh5BG036900 Rh5CG040300 Rh5DG036300
rosa_wichuraiana	Rw5G003400 Rw5G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	44, 177, 729, 777
AclWI	GGATC	1 cut(s)	558
AcsI	RAATTY	1 cut(s)	155
AfaI	GTAC	1 cut(s)	720
AgsI	TTSAA	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	763
AluBI	AGCT	5 cut(s)	29, 290, 738, 788, 847
AluI	AGCT	5 cut(s)	29, 290, 738, 788, 847
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	3 cut(s)	78, 651, 706
AlwI	GGATC	1 cut(s)	558
AlwNI	CAGNNNCTG	1 cut(s)	764
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	155
AspLEI	GCGC	2 cut(s)	84, 143
AspS9I	GGNCC	2 cut(s)	299, 796
AvaII	GGWCC	2 cut(s)	299, 796
BbsI	GAAGAC	1 cut(s)	817
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	148
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	1 cut(s)	765
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	3 cut(s)	78, 651, 706
BfaI	CTAG	2 cut(s)	474, 735
BfoI	RGCGCY	1 cut(s)	144
BisI	GCNGC	3 cut(s)	27, 729, 778
BlsI	GCNGC	3 cut(s)	28, 730, 779
Bme1390I	CCNGG	1 cut(s)	765
Bme18I	GGWCC	2 cut(s)	299, 796
BmgT120I	GGNCC	2 cut(s)	299, 796
BmrFI	CCNGG	1 cut(s)	765
BmsI	GCATC	1 cut(s)	408
BpiI	GAAGAC	1 cut(s)	817
BpmI	CTGGAG	2 cut(s)	306, 786
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	793
BsaXI	ACNNNNNCTCC	6 cut(s)	279, 309, 648, 678, 686, 716
BseBI	CCWGG	1 cut(s)	765
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	2 cut(s)	148, 436
BseMII	CTCAG	2 cut(s)	364, 657
BseXI	GCAGC	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	784
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	794
BsmAI	GTCTC	3 cut(s)	78, 651, 706
BsmI	GAATGC	1 cut(s)	475
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	145, 550, 579
BspACI	CCGC	4 cut(s)	44, 177, 729, 777
BspCNI	CTCAG	2 cut(s)	363, 656
BspPI	GGATC	1 cut(s)	558
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	3 cut(s)	145, 550, 579
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	5 cut(s)	217, 427, 541, 830, 854
Bst6I	CTCTTC	1 cut(s)	599
BstC8I	GCNNGC	4 cut(s)	202, 266, 614, 640
BstDEI	CTNAG	3 cut(s)	14, 350, 643
BstF5I	GGATG	2 cut(s)	148, 436
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	2 cut(s)	84, 143
BstKTI	GATC	3 cut(s)	148, 553, 582
BstMAI	GTCTC	3 cut(s)	78, 651, 706
BstMBI	GATC	3 cut(s)	145, 550, 579
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstNI	CCWGG	1 cut(s)	765
BstNSI	RCATGY	2 cut(s)	513, 616
BstSCI	CCNGG	1 cut(s)	763
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	817
BtsCI	GGATG	2 cut(s)	148, 436
BtsIMutI	CAGTG	1 cut(s)	651
Cac8I	GCNNGC	4 cut(s)	202, 266, 614, 640
CaiI	CAGNNNCTG	1 cut(s)	764
CfoI	GCGC	2 cut(s)	84, 143
Cfr13I	GGNCC	2 cut(s)	299, 796
Csp6I	GTAC	1 cut(s)	719
CspCI	CAANNNNNGTGG	2 cut(s)	237, 272
CviAII	CATG	5 cut(s)	437, 510, 613, 698, 800
CviQI	GTAC	1 cut(s)	719
DdeI	CTNAG	3 cut(s)	14, 350, 643
DpnI	GATC	3 cut(s)	147, 552, 581
DpnII	GATC	3 cut(s)	145, 550, 579
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
Eco47I	GGWCC	2 cut(s)	299, 796
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	763
EcoT22I	ATGCAT	2 cut(s)	401, 515
FaeI	CATG	5 cut(s)	440, 513, 616, 701, 803
FatI	CATG	5 cut(s)	436, 509, 612, 697, 799
FauI	CCCGC	1 cut(s)	51
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	27, 729, 778
FokI	GGATG	2 cut(s)	135, 443
Fsp4HI	GCNGC	3 cut(s)	27, 729, 778
FspBI	CTAG	2 cut(s)	474, 735
GlaI	GCGC	2 cut(s)	83, 142
GluI	GCNGC	3 cut(s)	27, 729, 778
GsaI	CCCAGC	1 cut(s)	788
GsuI	CTGGAG	2 cut(s)	306, 786
HaeII	RGCGCY	1 cut(s)	144
HapII	CCGG	1 cut(s)	794
HhaI	GCGC	2 cut(s)	84, 143
Hin1II	CATG	5 cut(s)	440, 513, 616, 701, 803
Hin6I	GCGC	2 cut(s)	82, 141
HinP1I	GCGC	2 cut(s)	82, 141
HinfI	GANTC	2 cut(s)	119, 371
HpaII	CCGG	1 cut(s)	794
Hpy166II	GTNNAC	1 cut(s)	623
Hpy188I	TCNGA	3 cut(s)	127, 161, 579
Hpy188III	TCNNGA	5 cut(s)	152, 285, 407, 692, 745
Hpy8I	GTNNAC	1 cut(s)	623
HpyAV	CCTTC	2 cut(s)	115, 672
HpyCH4III	ACNGT	5 cut(s)	217, 427, 541, 830, 854
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
HpyF3I	CTNAG	3 cut(s)	14, 350, 643
Hsp92II	CATG	5 cut(s)	440, 513, 616, 701, 803
HspAI	GCGC	2 cut(s)	82, 141
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	145, 550, 579
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	9 cut(s)	165, 214, 270, 505, 624, 750, 777, 798, 807
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	2 cut(s)	474, 735
MaeIII	GTNAC	6 cut(s)	116, 307, 646, 664, 692, 742
MalI	GATC	3 cut(s)	147, 552, 581
MboI	GATC	3 cut(s)	145, 550, 579
MboII	GAAGA	3 cut(s)	30, 616, 822
MfeI	CAATTG	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	4 cut(s)	155, 312, 355, 568
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	2 cut(s)	277, 509
MnlI	CCTC	2 cut(s)	121, 468
Mph1103I	ATGCAT	2 cut(s)	401, 515
MseI	TTAA	1 cut(s)	449
MspA1I	CMGCKG	1 cut(s)	788
MspI	CCGG	1 cut(s)	794
MspR9I	CCNGG	1 cut(s)	765
MunI	CAATTG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	765
MwoI	GCNNNNNNNGC	1 cut(s)	463
NdeII	GATC	3 cut(s)	145, 550, 579
NlaIII	CATG	5 cut(s)	440, 513, 616, 701, 803
NmuCI	GTSAC	4 cut(s)	116, 646, 692, 742
NsiI	ATGCAT	2 cut(s)	401, 515
NspI	RCATGY	2 cut(s)	513, 616
PaeI	GCATGC	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	1 cut(s)	371
PflFI	GACNNNGTC	1 cut(s)	698
PkrI	GCNGC	3 cut(s)	28, 730, 779
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	763
PspFI	CCCAGC	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	763
PspPI	GGNCC	2 cut(s)	299, 796
PstNI	CAGNNNCTG	1 cut(s)	764
PsyI	GACNNNGTC	1 cut(s)	698
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	1 cut(s)	720
RsaNI	GTAC	1 cut(s)	719
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	3 cut(s)	27, 729, 778
Sau3AI	GATC	3 cut(s)	145, 550, 579
Sau96I	GGNCC	2 cut(s)	299, 796
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	765
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	8 cut(s)	31, 292, 304, 720, 740, 766, 790, 849
SfaNI	GCATC	1 cut(s)	408
SinI	GGWCC	2 cut(s)	299, 796
SphI	GCATGC	1 cut(s)	616
Sse9I	AATT	4 cut(s)	155, 312, 355, 568
SsiI	CCGC	4 cut(s)	44, 177, 729, 777
SspMI	CTAG	2 cut(s)	474, 735
StyD4I	CCNGG	1 cut(s)	763
TaaI	ACNGT	5 cut(s)	217, 427, 541, 830, 854
TaqI	TCGA	2 cut(s)	64, 832
TaqII	GACCGA	2 cut(s)	392, 572
TasI	AATT	4 cut(s)	155, 312, 355, 568
TauI	GCSGC	2 cut(s)	731, 780
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	1 cut(s)	651
TseFI	GTSAC	4 cut(s)	116, 646, 692, 742
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	4 cut(s)	116, 646, 692, 742
TspDTI	ATGAA	3 cut(s)	21, 211, 233
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	651
Tth111I	GACNNNGTC	1 cut(s)	698
VpaK11BI	GGWCC	2 cut(s)	299, 796
XapI	RAATTY	1 cut(s)	155
XceI	RCATGY	2 cut(s)	513, 616
XspI	CTAG	2 cut(s)	474, 735
Zsp2I	ATGCAT	2 cut(s)	401, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.