Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004668

Physical Location & Seq

Genomic Coordinates Reverse (-)

2965571 .. 2966175

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031207

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCACTCCAGCTTAGAAGACTTGCAGCTGCATTGGGATACCCGCCACAACAAGTTCGAGCCTTGTCTCAATTGGGCTTTGGAGCTTGTTACAGTTCCATTGCTTCTTCTGACTCCTCTGATTATGGGGTTGGAGCTGAACCCCAAGATTTCCAAAGGTCTTTTCACAAGTCTGCCAGCATTGACCCAACAGCTTTTGTGGAGTTTGGTGCTGTTGTGCATTCGAAGTCCGTTGTGGGTGAGCATGTTTGTATTGGTTCCGGAGCTGTTATTGGACCTGGTGTTTCAGCTGAGCAATCGACCAAAATAGGGAAATTTGGACTTTCGTTTTTGTTTATATGTATATACTTGTTTGATTTTGATAGAGTTGTCGGGTTTCTGATTTCAACAGCTACAATGTTTCACTTAGTAATTGCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

141

Amino Acids

14.85

Weight (kDa)

6.39

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05210 AT4G05210 AT4G05210 AT4G21220
fragaria_vesca	FvH4_3g02730 FvH4_3g02730 FvH4_3g02730 FvH4_3g02730
malus_domestica	MD05G1340500.v1.1 MD10G1313900.v1.1
prunus_persica	Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1
pyrus_communis	pycom05g30970
rosa_chinensis	RchiOBHm_Chr5g0004131
rosa_laevigata	RLG00000031204 RLG00000031207
rosa_multiflora	Rmu_sc0000547.1_g000033 Rmu_sc0010028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071660 Rroxscaffold_1G00071900
rosa_rugosa	Rorug04G0409900 Rorug04G0410000 Rorug04G0410100
rosa_samantha	Rh5AG037600 Rh5BG036900 Rh5CG040300 Rh5DG036300
rosa_wichuraiana	Rw5G003400 Rw5G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	260
AciI	CCGC	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	387
AjnI	CCWGG	1 cut(s)	277
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AluBI	AGCT	8 cut(s)	13, 29, 86, 137, 194, 266, 290, 392
AluI	AGCT	8 cut(s)	13, 29, 86, 137, 194, 266, 290, 392
Alw26I	GTCTC	1 cut(s)	72
Aor13HI	TCCGGA	1 cut(s)	260
ApeKI	GCWGC	2 cut(s)	26, 29
ApoI	RAATTY	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	251
AsuII	TTCGAA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	16, 38
BciT130I	CCWGG	1 cut(s)	279
BciVI	GTATCC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	419
BfuI	GTATCC	1 cut(s)	32
BisI	GCNGC	2 cut(s)	27, 30
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	2 cut(s)	28, 31
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	25
Bpu1102I	GCTNAGC	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	224
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse3DI	GCAATG	1 cut(s)	99
BseAI	TCCGGA	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	16, 38
BsiSI	CCGG	1 cut(s)	261
BslI	CCNNNNNNNGG	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	220
Bsp119I	TTCGAA	1 cut(s)	224
Bsp13I	TCCGGA	1 cut(s)	260
Bsp1720I	GCTNAGC	1 cut(s)	291
BspACI	CCGC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	283
BspEI	TCCGGA	1 cut(s)	260
BspLI	GGNNCC	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	95
BstBI	TTCGAA	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	3 cut(s)	14, 291, 406
BstMAI	GTCTC	1 cut(s)	72
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	419
BstV1I	GCAGC	2 cut(s)	16, 38
BstV2I	GAAGAC	1 cut(s)	25
BsuI	GTATCC	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	275
CsiI	ACCWGGT	1 cut(s)	277
CviAII	CATG	1 cut(s)	245
DdeI	CTNAG	3 cut(s)	14, 291, 406
Eco47I	GGWCC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	277
FaeI	CATG	1 cut(s)	248
FaiI	YATR	7 cut(s)	126, 246, 338, 340, 344, 346, 421
FatI	CATG	1 cut(s)	244
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	27, 30
Fsp4HI	GCNGC	2 cut(s)	27, 30
GluI	GCNGC	2 cut(s)	27, 30
HapII	CCGG	1 cut(s)	261
Hin1II	CATG	1 cut(s)	248
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	1 cut(s)	251
Hpy188I	TCNGA	3 cut(s)	112, 121, 381
Hpy188III	TCNNGA	1 cut(s)	261
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	4 cut(s)	26, 32, 220, 416
HpyF3I	CTNAG	3 cut(s)	14, 291, 406
Hsp92II	CATG	1 cut(s)	248
Kpn2I	TCCGGA	1 cut(s)	260
LmnI	GCTCC	3 cut(s)	83, 134, 263
LpnPI	CCDG	5 cut(s)	23, 190, 264, 274, 291
Lsp1109I	GCAGC	2 cut(s)	16, 38
MabI	ACCWGGT	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	89
MboII	GAAGA	2 cut(s)	30, 99
MfeI	CAATTG	1 cut(s)	71
MluCI	AATT	3 cut(s)	71, 314, 411
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	1 cut(s)	127
MroI	TCCGGA	1 cut(s)	260
MspA1I	CMGCKG	2 cut(s)	29, 290
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	279
MunI	CAATTG	1 cut(s)	71
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	279
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	259
NspI	RCATGY	1 cut(s)	248
NspV	TTCGAA	1 cut(s)	224
PctI	GAATGC	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	28, 31
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	275
PvuII	CAGCTG	2 cut(s)	29, 290
SatI	GCNGC	2 cut(s)	27, 30
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	279
SexAI	ACCWGGT	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	419
SfuI	TTCGAA	1 cut(s)	224
SinI	GGWCC	1 cut(s)	275
Sse9I	AATT	3 cut(s)	71, 314, 411
SsiI	CCGC	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	3 cut(s)	58, 224, 299
TasI	AATT	3 cut(s)	71, 314, 411
TseI	GCWGC	2 cut(s)	26, 29
TspGWI	ACGGA	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.