Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004668

Physical Location & Seq

Genomic Coordinates Reverse (-)

3447445 .. 3449432

Gene Structure 1988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G003580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCACTCCAGCTTAGAAGACTTGCGGCTGCATTGGGATGCACGCCACAACAAGTTCGCGCCTTGTCTCAATTGGGCTTTGGAGCCTGTTACAGTTCCATTGCTTCCTCTGATTCCTCTGATTATGGGGATGGAACTAAACCCCAAGATTTCCAAAGCTGGCCTAATGGTGGTGGGTCTTTTCACAAGTCTGCCAGCATTGACCCAACAGCTTTTGTGGAGTTTGGTGCTGTTGTGCATTCCAAGTCCGTTGTGGGTGAGCATGTTTGTATTGGTTCTGGAGCTGTTATTGGACCTGGTGTTTCAGTTGGGCAATCGACCAAAATAGGATACAATGTTTCACTTAGTAATTGCACTATAGGAGATTCGTGTATGATCCACAATGGCGCGTGCATCGGTCAAGATGGATTTGGGTTTATGGTGGATGAGTATGGCAATATGTTAAAGAAGCCTCAGATGCTGAATGCTAGGATAGGGAACTGTGTGGAGATTGGTGCAAATACATGCATTGACAGGGGTAGTTGGAGAGATACAGTTGTAGGAGATCATTCGAAGATTGATAATTTAGTTCAGATTGGTCATAATGTAGTTATTGGGGAGAATTGCATGCTTTGTGGTCAAGTTGGGATTGCAGGCTCAGTGACGGTAGGAGACTATGTGACTATGGGAGGAAGGGTAGCAGTTCGTGACCATGTCTCCATTGTATCAAAGGTACGGCTTGCTGCTACTAGCTTTGTCACAAGGGACATTAAAGAACCTGGAGATTATGGTGGCTTCCCAGTTGTTCCAATTCGCGAGTGGCGAAGACAAGTTGCAATCCACAGTCGGACATCAACAAAGCGGAACCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

283

Amino Acids

29.88

Weight (kDa)

8.04

Isoelectric Point (pI)

33.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMPPB_C	PF25087	82 - 132	5e-07	GMPPB C-terminal domain
Hexapep	PF00132	177 - 212	7.6e-08	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05210 AT4G05210 AT4G05210 AT4G21220
fragaria_vesca	FvH4_3g02730 FvH4_3g02730 FvH4_3g02730 FvH4_3g02730
malus_domestica	MD05G1340500.v1.1 MD10G1313900.v1.1
prunus_persica	Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1
pyrus_communis	pycom05g30970
rosa_chinensis	RchiOBHm_Chr5g0004131
rosa_laevigata	RLG00000031204 RLG00000031207
rosa_multiflora	Rmu_sc0000547.1_g000033 Rmu_sc0010028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071660 Rroxscaffold_1G00071900
rosa_rugosa	Rorug04G0409900 Rorug04G0410000 Rorug04G0410100
rosa_samantha	Rh5AG037600 Rh5BG036900 Rh5CG040300 Rh5DG036300
rosa_wichuraiana	Rw5G003400 Rw5G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	60, 389, 795
AciI	CCGC	2 cut(s)	26, 841
AclWI	GGATC	1 cut(s)	370
AfaI	GTAC	1 cut(s)	714
AfiI	CCNNNNNNNGG	1 cut(s)	170
AjnI	CCWGG	2 cut(s)	295, 757
AluBI	AGCT	5 cut(s)	13, 159, 212, 284, 732
AluI	AGCT	5 cut(s)	13, 159, 212, 284, 732
Alw26I	GTCTC	3 cut(s)	72, 645, 700
AlwI	GGATC	1 cut(s)	370
AlwNI	CAGNNNCTG	1 cut(s)	460
AoxI	GGCC	1 cut(s)	161
ApeKI	GCWGC	2 cut(s)	29, 722
AspLEI	GCGC	2 cut(s)	62, 389
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	269
AsuII	TTCGAA	1 cut(s)	551
AvaII	GGWCC	1 cut(s)	293
BaeI	ACNNNNGTAYC	2 cut(s)	522, 555
BbsI	GAAGAC	2 cut(s)	25, 811
BbvI	GCAGC	2 cut(s)	16, 709
BccI	CCATC	2 cut(s)	125, 398
BceAI	ACGGC	1 cut(s)	731
BciT130I	CCWGG	2 cut(s)	297, 759
BciVI	GTATCC	1 cut(s)	323
BcoDI	GTCTC	3 cut(s)	72, 645, 700
BfaI	CTAG	2 cut(s)	468, 729
BfmI	CTRYAG	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	323
BisI	GCNGC	3 cut(s)	27, 30, 723
BlsI	GCNGC	3 cut(s)	28, 31, 724
Bme1390I	CCNGG	2 cut(s)	297, 759
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	2 cut(s)	85, 845
BmrFI	CCNGG	2 cut(s)	297, 759
BmrI	ACTGGG	1 cut(s)	773
BmsI	GCATC	3 cut(s)	29, 402, 447
BmuI	ACTGGG	1 cut(s)	773
BpiI	GAAGAC	2 cut(s)	25, 811
BpmI	CTGGAG	2 cut(s)	300, 780
Bpu14I	TTCGAA	1 cut(s)	551
BsaXI	ACNNNNNCTCC	6 cut(s)	642, 660, 672, 680, 690, 710
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	779
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	2 cut(s)	297, 759
BseGI	GGATG	3 cut(s)	44, 136, 430
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	467, 651
BseNI	ACTGG	1 cut(s)	779
BseXI	GCAGC	2 cut(s)	16, 709
Bsh1236I	CGCG	3 cut(s)	60, 389, 795
BshFI	GGCC	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	758
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	3 cut(s)	72, 645, 700
BsmFI	GGGAC	1 cut(s)	758
BsmI	GAATGC	2 cut(s)	238, 469
BsnI	GGCC	1 cut(s)	163
Bsp119I	TTCGAA	1 cut(s)	551
Bsp143I	GATC	2 cut(s)	375, 544
Bsp68I	TCGCGA	1 cut(s)	795
BspACI	CCGC	2 cut(s)	26, 841
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	2 cut(s)	466, 650
BspFNI	CGCG	3 cut(s)	60, 389, 795
BspLI	GGNNCC	2 cut(s)	85, 845
BspPI	GGATC	1 cut(s)	370
BspT104I	TTCGAA	1 cut(s)	551
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	779
BssMI	GATC	2 cut(s)	375, 544
Bst2UI	CCWGG	2 cut(s)	297, 759
Bst4CI	ACNGT	5 cut(s)	95, 482, 535, 646, 824
BstBI	TTCGAA	1 cut(s)	551
BstC8I	GCNNGC	7 cut(s)	44, 161, 196, 391, 608, 634, 720
BstDEI	CTNAG	5 cut(s)	14, 344, 453, 637, 849
BstF5I	GGATG	3 cut(s)	44, 136, 430
BstFNI	CGCG	3 cut(s)	60, 389, 795
BstHHI	GCGC	2 cut(s)	62, 389
BstKTI	GATC	2 cut(s)	378, 547
BstMAI	GTCTC	3 cut(s)	72, 645, 700
BstMBI	GATC	2 cut(s)	375, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	457
BstNI	CCWGG	2 cut(s)	297, 759
BstNSI	RCATGY	3 cut(s)	266, 507, 610
BstSCI	CCNGG	2 cut(s)	295, 757
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	3 cut(s)	60, 389, 795
BstV1I	GCAGC	2 cut(s)	16, 709
BstV2I	GAAGAC	2 cut(s)	25, 811
BsuI	GTATCC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	163
BtsCI	GGATG	3 cut(s)	44, 136, 430
BtsIMutI	CAGTG	1 cut(s)	645
BtuMI	TCGCGA	1 cut(s)	795
Cac8I	GCNNGC	7 cut(s)	44, 161, 196, 391, 608, 634, 720
CaiI	CAGNNNCTG	1 cut(s)	460
CfoI	GCGC	2 cut(s)	62, 389
Cfr13I	GGNCC	1 cut(s)	293
CsiI	ACCWGGT	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	713
CviAII	CATG	4 cut(s)	263, 504, 607, 692
CviQI	GTAC	1 cut(s)	713
DdeI	CTNAG	5 cut(s)	14, 344, 453, 637, 849
DpnI	GATC	2 cut(s)	377, 546
DpnII	GATC	2 cut(s)	375, 544
Eco47I	GGWCC	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	295, 757
EcoT22I	ATGCAT	1 cut(s)	509
FaeI	CATG	4 cut(s)	266, 507, 610, 695
FaqI	GGGAC	1 cut(s)	758
FatI	CATG	4 cut(s)	262, 503, 606, 691
Fnu4HI	GCNGC	3 cut(s)	27, 30, 723
FokI	GGATG	3 cut(s)	51, 143, 437
Fsp4HI	GCNGC	3 cut(s)	27, 30, 723
FspBI	CTAG	2 cut(s)	468, 729
GlaI	GCGC	2 cut(s)	61, 388
GluI	GCNGC	3 cut(s)	27, 30, 723
GsuI	CTGGAG	2 cut(s)	300, 780
HaeIII	GGCC	1 cut(s)	163
HhaI	GCGC	2 cut(s)	62, 389
Hin1II	CATG	4 cut(s)	266, 507, 610, 695
Hin6I	GCGC	2 cut(s)	60, 387
HinP1I	GCGC	2 cut(s)	60, 387
HinfI	GANTC	2 cut(s)	113, 365
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	5 cut(s)	112, 121, 456, 573, 828
Hpy188III	TCNNGA	4 cut(s)	279, 401, 686, 794
HpyAV	CCTTC	1 cut(s)	666
HpyCH4III	ACNGT	5 cut(s)	95, 482, 535, 646, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	457
HpyF3I	CTNAG	5 cut(s)	14, 344, 453, 637, 849
Hsp92II	CATG	4 cut(s)	266, 507, 610, 695
HspAI	GCGC	2 cut(s)	60, 387
Kzo9I	GATC	2 cut(s)	375, 544
LmnI	GCTCC	2 cut(s)	83, 281
Lsp1109I	GCAGC	2 cut(s)	16, 709
LweI	GCATC	3 cut(s)	29, 402, 447
MabI	ACCWGGT	1 cut(s)	295
MaeI	CTAG	2 cut(s)	468, 729
MaeIII	GTNAC	5 cut(s)	89, 640, 658, 686, 736
MalI	GATC	2 cut(s)	377, 546
MboI	GATC	2 cut(s)	375, 544
MboII	GAAGA	3 cut(s)	30, 565, 816
MfeI	CAATTG	1 cut(s)	71
MluCI	AATT	5 cut(s)	71, 349, 562, 601, 789
MmeI	TCCRAC	2 cut(s)	503, 806
MnlI	CCTC	4 cut(s)	118, 127, 462, 662
Mph1103I	ATGCAT	1 cut(s)	509
MseI	TTAA	2 cut(s)	443, 750
MslI	CAYNNNNRTG	1 cut(s)	37
MspR9I	CCNGG	2 cut(s)	297, 759
MunI	CAATTG	1 cut(s)	71
Mva1269I	GAATGC	2 cut(s)	238, 469
MvaI	CCWGG	2 cut(s)	297, 759
MvnI	CGCG	3 cut(s)	60, 389, 795
MwoI	GCNNNNNNNGC	1 cut(s)	457
NdeII	GATC	2 cut(s)	375, 544
NlaIII	CATG	4 cut(s)	266, 507, 610, 695
NlaIV	GGNNCC	2 cut(s)	85, 845
NmuCI	GTSAC	4 cut(s)	640, 658, 686, 736
NruI	TCGCGA	1 cut(s)	795
NsiI	ATGCAT	1 cut(s)	509
NspI	RCATGY	3 cut(s)	266, 507, 610
NspV	TTCGAA	1 cut(s)	551
PaeI	GCATGC	1 cut(s)	610
PcsI	WCGNNNNNNNCGW	1 cut(s)	799
PctI	GAATGC	2 cut(s)	238, 469
PfeI	GAWTC	2 cut(s)	113, 365
PflFI	GACNNNGTC	1 cut(s)	692
PkrI	GCNGC	3 cut(s)	28, 31, 724
Psp6I	CCWGG	2 cut(s)	295, 757
PspGI	CCWGG	2 cut(s)	295, 757
PspN4I	GGNNCC	2 cut(s)	85, 845
PspPI	GGNCC	1 cut(s)	293
PstNI	CAGNNNCTG	1 cut(s)	460
PsyI	GACNNNGTC	1 cut(s)	692
RruI	TCGCGA	1 cut(s)	795
RsaI	GTAC	1 cut(s)	714
RsaNI	GTAC	1 cut(s)	713
RseI	CAYNNNNRTG	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	443, 750
SatI	GCNGC	3 cut(s)	27, 30, 723
Sau3AI	GATC	2 cut(s)	375, 544
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	297, 759
SetI	ASST	8 cut(s)	15, 161, 214, 286, 298, 714, 734, 760
SexAI	ACCWGGT	1 cut(s)	295
SfaNI	GCATC	3 cut(s)	29, 402, 447
SfcI	CTRYAG	1 cut(s)	357
SfuI	TTCGAA	1 cut(s)	551
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	37
SphI	GCATGC	1 cut(s)	610
Sse9I	AATT	5 cut(s)	71, 349, 562, 601, 789
SsiI	CCGC	2 cut(s)	26, 841
SspMI	CTAG	2 cut(s)	468, 729
StyD4I	CCNGG	2 cut(s)	295, 757
TaaI	ACNGT	5 cut(s)	95, 482, 535, 646, 824
TaqI	TCGA	2 cut(s)	317, 551
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	5 cut(s)	71, 349, 562, 601, 789
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	113, 365
Tru1I	TTAA	2 cut(s)	443, 750
Tru9I	TTAA	2 cut(s)	443, 750
TscAI	CASTG	1 cut(s)	645
TseFI	GTSAC	4 cut(s)	640, 658, 686, 736
TseI	GCWGC	2 cut(s)	29, 722
Tsp45I	GTSAC	4 cut(s)	640, 658, 686, 736
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	1 cut(s)	645
Tth111I	GACNNNGTC	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	293
XceI	RCATGY	3 cut(s)	266, 507, 610
XcmI	CCANNNNNNNNNTGG	2 cut(s)	250, 795
XspI	CTAG	2 cut(s)	468, 729
Zsp2I	ATGCAT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.