Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004668

Physical Location & Seq

Genomic Coordinates Reverse (-)

2569423 .. 2571426

Gene Structure 2004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG036900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCACTCCAGCTTAGAAGACTTGCGGCTGCATTGGGATACCCGCCACAACAAGTTCGAGCCTTGTCTCAATTGGGCTTTGGAGCTTGTTACAGTTCCATTGCTTCCTCTGATTATGGGGTTGGAACTAAACCCCAAGATTTCCAAAGCTGGCCTAATGGAGGTGGGTCTTTTCACAAGACTGCCACCATTGACCCAACAGCTTTTGTGGAGTTTGGTGCTGTTGTGCATTCGAAGTCCGTTGTGGGTGAACATGTTTGTATTGGTTCTGGAGCTGTTATTGGACCTGGTGTTTCAGTTGGGCAATCGACCAAAATAGGCTACAATGTTTCACTTAGTAATTGCACTATAGGAGATTCGTGTATAATCCACAATGGCGCATGCATCGGTCAAGATGGATTTGGGTTTATGGTGGATGAGCATGGGAATATGTTAAAGAAGCCTCAGATGCTGAATGCTAGGATAGGGAACTGTGTGGAGATTGGTGCAAATACATGCATTGACAGGGGTAGTTGGAGAGATACAGTTGTAGGAGATCATTCGAAGATTGATAATTTAGTTCAGATTGGTCATAATGTAGTTATTGGGGAGAATTGCATGCTTTGTGGTCAAGTTGGGATTGCAGGCTCAGTGACGGTAGGAGACTATGTGACTATGGGAGGAAGGGTAGCAGTTTGTGACCATGTCTCCATTGTATCAAAGGTACGGCTTGCTGCTACTAGCTTTGTCACAAGGGACATTAAAGAACCTGGAGATTACGGTGGCTTCCCAGCTGTTCCAATCCGCGAGTGGCGAAGACAAGTTGCAATTCACAGTCGGACATCAACAAAGCGGAACCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

280

Amino Acids

29.54

Weight (kDa)

8.33

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMPPB_C	PF25087	84 - 129	1.4e-06	GMPPB C-terminal domain
Hexapep	PF00132	174 - 209	6.4e-08	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05210 AT4G05210 AT4G05210 AT4G21220
fragaria_vesca	FvH4_3g02730 FvH4_3g02730 FvH4_3g02730 FvH4_3g02730
malus_domestica	MD05G1340500.v1.1 MD10G1313900.v1.1
prunus_persica	Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1
pyrus_communis	pycom05g30970
rosa_chinensis	RchiOBHm_Chr5g0004131
rosa_laevigata	RLG00000031204 RLG00000031207
rosa_multiflora	Rmu_sc0000547.1_g000033 Rmu_sc0010028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071660 Rroxscaffold_1G00071900
rosa_rugosa	Rorug04G0409900 Rorug04G0410000 Rorug04G0410100
rosa_samantha	Rh5AG037600 Rh5BG036900 Rh5CG040300 Rh5DG036300
rosa_wichuraiana	Rw5G003400 Rw5G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	786
AciI	CCGC	4 cut(s)	26, 44, 784, 832
AfaI	GTAC	1 cut(s)	705
AfiI	CCNNNNNNNGG	1 cut(s)	161
AflIII	ACRYGT	1 cut(s)	253
AjnI	CCWGG	2 cut(s)	286, 748
AluBI	AGCT	7 cut(s)	13, 86, 150, 203, 275, 723, 773
AluI	AGCT	7 cut(s)	13, 86, 150, 203, 275, 723, 773
Alw26I	GTCTC	3 cut(s)	72, 636, 691
AlwNI	CAGNNNCTG	1 cut(s)	451
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	29, 713
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	260
AsuII	TTCGAA	2 cut(s)	233, 542
AvaII	GGWCC	1 cut(s)	284
BaeI	ACNNNNGTAYC	2 cut(s)	513, 546
BbsI	GAAGAC	2 cut(s)	25, 802
BbvI	GCAGC	2 cut(s)	16, 700
BccI	CCATC	1 cut(s)	389
BceAI	ACGGC	1 cut(s)	722
BciT130I	CCWGG	2 cut(s)	288, 750
BciVI	GTATCC	1 cut(s)	32
BcoDI	GTCTC	3 cut(s)	72, 636, 691
BfaI	CTAG	2 cut(s)	459, 720
BfmI	CTRYAG	1 cut(s)	348
BfuI	GTATCC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	27, 30, 714
BlsI	GCNGC	3 cut(s)	28, 31, 715
Bme1390I	CCNGG	2 cut(s)	288, 750
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	836
BmrFI	CCNGG	2 cut(s)	288, 750
BmsI	GCATC	2 cut(s)	393, 438
BpiI	GAAGAC	2 cut(s)	25, 802
BpmI	CTGGAG	2 cut(s)	291, 771
Bpu14I	TTCGAA	2 cut(s)	233, 542
BsaXI	ACNNNNNCTCC	6 cut(s)	633, 651, 663, 671, 681, 701
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	2 cut(s)	288, 750
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	458, 642
BseXI	GCAGC	2 cut(s)	16, 700
BseYI	CCCAGC	1 cut(s)	769
Bsh1236I	CGCG	1 cut(s)	786
BshFI	GGCC	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	3 cut(s)	72, 636, 691
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	2 cut(s)	229, 460
BsnI	GGCC	1 cut(s)	154
Bsp119I	TTCGAA	2 cut(s)	233, 542
Bsp143I	GATC	1 cut(s)	535
BspACI	CCGC	4 cut(s)	26, 44, 784, 832
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	2 cut(s)	457, 641
BspFNI	CGCG	1 cut(s)	786
BspLI	GGNNCC	1 cut(s)	836
BspT104I	TTCGAA	2 cut(s)	233, 542
BsrDI	GCAATG	1 cut(s)	99
BssMI	GATC	1 cut(s)	535
Bst2UI	CCWGG	2 cut(s)	288, 750
Bst4CI	ACNGT	6 cut(s)	95, 473, 526, 637, 761, 815
BstBI	TTCGAA	2 cut(s)	233, 542
BstC8I	GCNNGC	5 cut(s)	152, 382, 599, 625, 711
BstDEI	CTNAG	5 cut(s)	14, 335, 444, 628, 840
BstENI	CCTNNNNNAGG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	421
BstFNI	CGCG	1 cut(s)	786
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	1 cut(s)	538
BstMAI	GTCTC	3 cut(s)	72, 636, 691
BstMBI	GATC	1 cut(s)	535
BstMWI	GCNNNNNNNGC	1 cut(s)	448
BstNI	CCWGG	2 cut(s)	288, 750
BstNSI	RCATGY	4 cut(s)	257, 384, 498, 601
BstSCI	CCNGG	2 cut(s)	286, 748
BstSFI	CTRYAG	1 cut(s)	348
BstUI	CGCG	1 cut(s)	786
BstV1I	GCAGC	2 cut(s)	16, 700
BstV2I	GAAGAC	2 cut(s)	25, 802
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	5 cut(s)	152, 382, 599, 625, 711
CaiI	CAGNNNCTG	1 cut(s)	451
CfoI	GCGC	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	284
CsiI	ACCWGGT	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	704
CviAII	CATG	6 cut(s)	254, 381, 422, 495, 598, 683
CviQI	GTAC	1 cut(s)	704
DdeI	CTNAG	5 cut(s)	14, 335, 444, 628, 840
DpnI	GATC	1 cut(s)	537
DpnII	GATC	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	284
EcoNI	CCTNNNNNAGG	1 cut(s)	159
EcoRII	CCWGG	2 cut(s)	286, 748
EcoT22I	ATGCAT	2 cut(s)	386, 500
FaeI	CATG	6 cut(s)	257, 384, 425, 498, 601, 686
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	6 cut(s)	253, 380, 421, 494, 597, 682
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	27, 30, 714
FokI	GGATG	1 cut(s)	428
Fsp4HI	GCNGC	3 cut(s)	27, 30, 714
FspBI	CTAG	2 cut(s)	459, 720
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	3 cut(s)	27, 30, 714
GsaI	CCCAGC	1 cut(s)	773
GsuI	CTGGAG	2 cut(s)	291, 771
HaeIII	GGCC	1 cut(s)	154
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	6 cut(s)	257, 384, 425, 498, 601, 686
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HinfI	GANTC	1 cut(s)	356
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	4 cut(s)	112, 447, 564, 819
Hpy188III	TCNNGA	2 cut(s)	270, 392
Hpy8I	GTNNAC	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	657
HpyCH4III	ACNGT	6 cut(s)	95, 473, 526, 637, 761, 815
HpyCH4V	TGCA	9 cut(s)	32, 229, 345, 384, 488, 498, 597, 623, 806
HpyF10VI	GCNNNNNNNGC	1 cut(s)	448
HpyF3I	CTNAG	5 cut(s)	14, 335, 444, 628, 840
Hsp92II	CATG	6 cut(s)	257, 384, 425, 498, 601, 686
HspAI	GCGC	1 cut(s)	378
Kzo9I	GATC	1 cut(s)	535
LmnI	GCTCC	2 cut(s)	83, 272
Lsp1109I	GCAGC	2 cut(s)	16, 700
LweI	GCATC	2 cut(s)	393, 438
MabI	ACCWGGT	1 cut(s)	286
MaeI	CTAG	2 cut(s)	459, 720
MaeIII	GTNAC	5 cut(s)	89, 631, 649, 677, 727
MalI	GATC	1 cut(s)	537
MboI	GATC	1 cut(s)	535
MboII	GAAGA	3 cut(s)	30, 556, 807
MfeI	CAATTG	1 cut(s)	71
MluCI	AATT	5 cut(s)	71, 340, 553, 592, 807
MmeI	TCCRAC	3 cut(s)	103, 494, 797
MnlI	CCTC	4 cut(s)	118, 155, 453, 653
Mph1103I	ATGCAT	2 cut(s)	386, 500
MseI	TTAA	2 cut(s)	434, 741
MspA1I	CMGCKG	1 cut(s)	773
MspR9I	CCNGG	2 cut(s)	288, 750
MunI	CAATTG	1 cut(s)	71
Mva1269I	GAATGC	2 cut(s)	229, 460
MvaI	CCWGG	2 cut(s)	288, 750
MvnI	CGCG	1 cut(s)	786
MwoI	GCNNNNNNNGC	1 cut(s)	448
NdeII	GATC	1 cut(s)	535
NlaIII	CATG	6 cut(s)	257, 384, 425, 498, 601, 686
NlaIV	GGNNCC	1 cut(s)	836
NmuCI	GTSAC	4 cut(s)	631, 649, 677, 727
NsiI	ATGCAT	2 cut(s)	386, 500
NspI	RCATGY	4 cut(s)	257, 384, 498, 601
NspV	TTCGAA	2 cut(s)	233, 542
PaeI	GCATGC	2 cut(s)	384, 601
PciI	ACATGT	1 cut(s)	253
PctI	GAATGC	2 cut(s)	229, 460
PfeI	GAWTC	1 cut(s)	356
PflFI	GACNNNGTC	1 cut(s)	683
PkrI	GCNGC	3 cut(s)	28, 31, 715
PscI	ACATGT	1 cut(s)	253
Psp6I	CCWGG	2 cut(s)	286, 748
PspFI	CCCAGC	1 cut(s)	769
PspGI	CCWGG	2 cut(s)	286, 748
PspN4I	GGNNCC	1 cut(s)	836
PspPI	GGNCC	1 cut(s)	284
PstNI	CAGNNNCTG	1 cut(s)	451
PsyI	GACNNNGTC	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	1 cut(s)	705
RsaNI	GTAC	1 cut(s)	704
SaqAI	TTAA	2 cut(s)	434, 741
SatI	GCNGC	3 cut(s)	27, 30, 714
Sau3AI	GATC	1 cut(s)	535
Sau96I	GGNCC	1 cut(s)	284
ScrFI	CCNGG	2 cut(s)	288, 750
SexAI	ACCWGGT	1 cut(s)	286
SfaNI	GCATC	2 cut(s)	393, 438
SfcI	CTRYAG	1 cut(s)	348
SfuI	TTCGAA	2 cut(s)	233, 542
SinI	GGWCC	1 cut(s)	284
SphI	GCATGC	2 cut(s)	384, 601
Sse9I	AATT	5 cut(s)	71, 340, 553, 592, 807
SsiI	CCGC	4 cut(s)	26, 44, 784, 832
SspMI	CTAG	2 cut(s)	459, 720
StyD4I	CCNGG	2 cut(s)	286, 748
TaaI	ACNGT	6 cut(s)	95, 473, 526, 637, 761, 815
TaqI	TCGA	4 cut(s)	58, 233, 308, 542
TaqII	GACCGA	1 cut(s)	377
TasI	AATT	5 cut(s)	71, 340, 553, 592, 807
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	2 cut(s)	434, 741
Tru9I	TTAA	2 cut(s)	434, 741
TscAI	CASTG	1 cut(s)	636
TseFI	GTSAC	4 cut(s)	631, 649, 677, 727
TseI	GCWGC	2 cut(s)	29, 713
Tsp45I	GTSAC	4 cut(s)	631, 649, 677, 727
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	1 cut(s)	636
Tth111I	GACNNNGTC	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	284
XagI	CCTNNNNNAGG	1 cut(s)	159
XceI	RCATGY	4 cut(s)	257, 384, 498, 601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	786
XspI	CTAG	2 cut(s)	459, 720
Zsp2I	ATGCAT	2 cut(s)	386, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.