Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004668

Physical Location & Seq

Genomic Coordinates Forward (+)

30885006 .. 30887209

Gene Structure 2204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g30970.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCAAGCGCTCTTAGAAGACTTGCAGCTGCATTCTGCTACTCGCCACATTTCCAATTCGTTCGAAGCTTCTCTCTGTTGCGCTTTGGAAATAGTTACCGTTCCTTTGTGTATTCGGCTTCGTCTGAGGAGTGTGCTCCAACTGGTCATCCAGAATTCCGACAATGGAAGAACGGAGGTGGGATTTTCCACAAGTCTGCCTGCATTGACCCAACAGTTTTCATAGAGTTTGGTGCTGTTGTTCATTCTAAATCCGTTGTCTGCGAACATGTTTGTATTGGTTCTGGAGCTGTCGTTGGACCTTCGGTTACAGTTGGGCAATCAACGAAAATTGGCTACAATGTTGCACTCAGTAATTGCAGCATAGGAGATTCGTGCATAATCCACAGTGGCGTATGCATCGGTCAAGATGGATTTGGATTTATGGTGGATGAGCATGGGAATATGTTAAAGAGGCCGCAAATGCTGAATGCTAGGATTGGAAACCACGTGGAGATTGGTGCAAATACTTGCATTGACAGGGGCAGTTGGAGAGATACCGTTTTAGGGGATCATTCAAAGATAGACAATTTAGTTCAGATTGGTCATAATGTAGTTATTGGGAACAACTGCATAATTTGTGGACAAGTTGGGATTGCAGGCTCAGTGACGATAGGAGACTATGTAACTATGGGAGGGAGGGTAGCAGTTCGTGACCATGTATCCATTATATCAAAGGTACGGCTTGCTGGTATGAGCTGTGTCATGAAAGATATTACAGAACCTGGAGATTACGGTGGCTTCCCTGCTGTTCCAGCCCATGAGTGGCGAAGACAAGTTACAAACTACAGTCGGACATCAAAACAGCGGAACCCTGAGAATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

289

Amino Acids

31.11

Weight (kDa)

8.45

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05210 AT4G05210 AT4G05210 AT4G21220
fragaria_vesca	FvH4_3g02730 FvH4_3g02730 FvH4_3g02730 FvH4_3g02730
malus_domestica	MD05G1340500.v1.1 MD10G1313900.v1.1
prunus_persica	Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1
pyrus_communis	pycom05g30970
rosa_chinensis	RchiOBHm_Chr5g0004131
rosa_laevigata	RLG00000031204 RLG00000031207
rosa_multiflora	Rmu_sc0000547.1_g000033 Rmu_sc0010028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071660 Rroxscaffold_1G00071900
rosa_rugosa	Rorug04G0409900 Rorug04G0410000 Rorug04G0410100
rosa_samantha	Rh5AG037600 Rh5BG036900 Rh5CG040300 Rh5DG036300
rosa_wichuraiana	Rw5G003400 Rw5G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	458, 847
AclWI	GGATC	1 cut(s)	558
AcsI	RAATTY	1 cut(s)	155
AcvI	CACGTG	1 cut(s)	490
AfaI	GTAC	1 cut(s)	720
AfeI	AGCGCT	1 cut(s)	10
AfiI	CCNNNNNNNGG	2 cut(s)	546, 804
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	1 cut(s)	558
AjnI	CCWGG	1 cut(s)	763
AluBI	AGCT	4 cut(s)	29, 69, 290, 738
AluI	AGCT	4 cut(s)	29, 69, 290, 738
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	1 cut(s)	651
AlwI	GGATC	1 cut(s)	558
AlwNI	CAGNNNCTG	1 cut(s)	764
Aor51HI	AGCGCT	1 cut(s)	10
AoxI	GGCC	1 cut(s)	455
ApeKI	GCWGC	3 cut(s)	26, 29, 360
ApoI	RAATTY	1 cut(s)	155
AspLEI	GCGC	2 cut(s)	11, 84
AspS9I	GGNCC	1 cut(s)	299
AsuII	TTCGAA	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	299
BarI	GAAGNNNNNNTAC	2 cut(s)	802, 834
BbrPI	CACGTG	1 cut(s)	490
BbsI	GAAGAC	2 cut(s)	25, 817
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	3 cut(s)	16, 38, 372
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	737
BciT130I	CCWGG	1 cut(s)	765
BciVI	GTATCC	1 cut(s)	712
BcoDI	GTCTC	1 cut(s)	651
BfaI	CTAG	1 cut(s)	474
BfmI	CTRYAG	1 cut(s)	826
BfoI	RGCGCY	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	712
BisI	GCNGC	4 cut(s)	27, 30, 361, 458
BlsI	GCNGC	4 cut(s)	28, 31, 362, 459
Bme1390I	CCNGG	1 cut(s)	765
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	851
BmrFI	CCNGG	1 cut(s)	765
BmsI	GCATC	1 cut(s)	408
BpiI	GAAGAC	2 cut(s)	25, 817
BpmI	CTGGAG	2 cut(s)	306, 786
Bpu14I	TTCGAA	1 cut(s)	64
BsaAI	YACGTR	1 cut(s)	490
BsaXI	ACNNNNNCTCC	6 cut(s)	279, 309, 648, 666, 678, 696
Bsc4I	CCNNNNNNNGG	2 cut(s)	546, 804
Bse1I	ACTGG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	765
BseGI	GGATG	2 cut(s)	148, 436
BseLI	CCNNNNNNNGG	2 cut(s)	546, 804
BseMII	CTCAG	4 cut(s)	117, 364, 657, 846
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	3 cut(s)	16, 38, 372
BshFI	GGCC	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	139
BslI	CCNNNNNNNGG	2 cut(s)	546, 804
BsmAI	GTCTC	1 cut(s)	651
BsmI	GAATGC	2 cut(s)	32, 475
BsnI	GGCC	1 cut(s)	457
Bsp119I	TTCGAA	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	550
BspACI	CCGC	2 cut(s)	458, 847
BspANI	GGCC	1 cut(s)	457
BspCNI	CTCAG	4 cut(s)	118, 363, 656, 847
BspHI	TCATGA	1 cut(s)	744
BspLI	GGNNCC	1 cut(s)	851
BspPI	GGATC	1 cut(s)	558
BspT104I	TTCGAA	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	148
BssMI	GATC	1 cut(s)	550
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	7 cut(s)	101, 217, 313, 389, 541, 776, 830
BstBAI	YACGTR	1 cut(s)	490
BstBI	TTCGAA	1 cut(s)	64
BstC8I	GCNNGC	4 cut(s)	7, 202, 640, 726
BstDEI	CTNAG	5 cut(s)	14, 126, 350, 643, 855
BstF5I	GGATG	2 cut(s)	148, 436
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 84
BstKTI	GATC	1 cut(s)	553
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	1 cut(s)	550
BstMWI	GCNNNNNNNGC	2 cut(s)	463, 794
BstNI	CCWGG	1 cut(s)	765
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	763
BstSFI	CTRYAG	1 cut(s)	826
BstV1I	GCAGC	3 cut(s)	16, 38, 372
BstV2I	GAAGAC	2 cut(s)	25, 817
BsuI	GTATCC	1 cut(s)	712
BsuRI	GGCC	1 cut(s)	457
BtsCI	GGATG	2 cut(s)	148, 436
BtsIMutI	CAGTG	2 cut(s)	394, 651
Cac8I	GCNNGC	4 cut(s)	7, 202, 640, 726
CaiI	CAGNNNCTG	1 cut(s)	764
CciI	TCATGA	1 cut(s)	744
CfoI	GCGC	2 cut(s)	11, 84
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	719
CviAII	CATG	5 cut(s)	269, 437, 698, 745, 800
CviQI	GTAC	1 cut(s)	719
DdeI	CTNAG	5 cut(s)	14, 126, 350, 643, 855
DpnI	GATC	1 cut(s)	552
DpnII	GATC	1 cut(s)	550
Eco47I	GGWCC	1 cut(s)	299
Eco47III	AGCGCT	1 cut(s)	10
Eco72I	CACGTG	1 cut(s)	490
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	763
EcoT22I	ATGCAT	1 cut(s)	401
FaeI	CATG	5 cut(s)	272, 440, 701, 748, 803
FatI	CATG	5 cut(s)	268, 436, 697, 744, 799
Fnu4HI	GCNGC	4 cut(s)	27, 30, 361, 458
FokI	GGATG	2 cut(s)	135, 443
Fsp4HI	GCNGC	4 cut(s)	27, 30, 361, 458
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	2 cut(s)	10, 83
GluI	GCNGC	4 cut(s)	27, 30, 361, 458
GsuI	CTGGAG	2 cut(s)	306, 786
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	457
HhaI	GCGC	2 cut(s)	11, 84
Hin1II	CATG	5 cut(s)	272, 440, 701, 748, 803
Hin6I	GCGC	2 cut(s)	9, 82
HinP1I	GCGC	2 cut(s)	9, 82
HindIII	AAGCTT	1 cut(s)	67
HinfI	GANTC	2 cut(s)	371, 859
Hpy166II	GTNNAC	1 cut(s)	623
Hpy188I	TCNGA	4 cut(s)	127, 161, 579, 834
Hpy188III	TCNNGA	5 cut(s)	152, 285, 407, 692, 745
Hpy8I	GTNNAC	1 cut(s)	623
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	7 cut(s)	101, 217, 313, 389, 541, 776, 830
HpyCH4IV	ACGT	1 cut(s)	489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	463, 794
HpyF3I	CTNAG	5 cut(s)	14, 126, 350, 643, 855
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	5 cut(s)	272, 440, 701, 748, 803
HspAI	GCGC	2 cut(s)	9, 82
Kzo9I	GATC	1 cut(s)	550
LmnI	GCTCC	2 cut(s)	142, 287
Lsp1109I	GCAGC	3 cut(s)	16, 38, 372
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	6 cut(s)	95, 307, 646, 664, 692, 817
MalI	GATC	1 cut(s)	552
MboI	GATC	1 cut(s)	550
MboII	GAAGA	3 cut(s)	30, 181, 822
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	6 cut(s)	56, 155, 330, 355, 568, 615
MmeI	TCCRAC	5 cut(s)	164, 184, 277, 509, 812
MnlI	CCTC	5 cut(s)	121, 170, 447, 668, 672
Mph1103I	ATGCAT	1 cut(s)	401
MseI	TTAA	1 cut(s)	449
MspA1I	CMGCKG	2 cut(s)	29, 847
MspR9I	CCNGG	1 cut(s)	765
Mva1269I	GAATGC	2 cut(s)	32, 475
MvaI	CCWGG	1 cut(s)	765
MwoI	GCNNNNNNNGC	2 cut(s)	463, 794
NdeII	GATC	1 cut(s)	550
NlaIII	CATG	5 cut(s)	272, 440, 701, 748, 803
NlaIV	GGNNCC	1 cut(s)	851
NmuCI	GTSAC	2 cut(s)	646, 692
NsiI	ATGCAT	1 cut(s)	401
NspI	RCATGY	1 cut(s)	272
NspV	TTCGAA	1 cut(s)	64
PagI	TCATGA	1 cut(s)	744
PciI	ACATGT	1 cut(s)	268
PctI	GAATGC	2 cut(s)	32, 475
PfeI	GAWTC	2 cut(s)	371, 859
PkrI	GCNGC	4 cut(s)	28, 31, 362, 459
PmaCI	CACGTG	1 cut(s)	490
PmlI	CACGTG	1 cut(s)	490
Ppu21I	YACGTR	1 cut(s)	490
PscI	ACATGT	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	763
PspCI	CACGTG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	763
PspN4I	GGNNCC	1 cut(s)	851
PspPI	GGNCC	1 cut(s)	299
PstNI	CAGNNNCTG	1 cut(s)	764
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	720
RsaNI	GTAC	1 cut(s)	719
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	4 cut(s)	27, 30, 361, 458
Sau3AI	GATC	1 cut(s)	550
Sau96I	GGNCC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	765
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	9 cut(s)	31, 71, 181, 292, 304, 492, 720, 740, 766
SfaNI	GCATC	1 cut(s)	408
SfcI	CTRYAG	1 cut(s)	826
SfuI	TTCGAA	1 cut(s)	64
SinI	GGWCC	1 cut(s)	299
Sse9I	AATT	6 cut(s)	56, 155, 330, 355, 568, 615
SsiI	CCGC	2 cut(s)	458, 847
SspMI	CTAG	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	763
TaaI	ACNGT	7 cut(s)	101, 217, 313, 389, 541, 776, 830
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	1 cut(s)	64
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	6 cut(s)	56, 155, 330, 355, 568, 615
TauI	GCSGC	1 cut(s)	460
TfiI	GAWTC	2 cut(s)	371, 859
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	2 cut(s)	394, 651
TseFI	GTSAC	2 cut(s)	646, 692
TseI	GCWGC	3 cut(s)	26, 29, 360
Tsp45I	GTSAC	2 cut(s)	646, 692
TspDTI	ATGAA	3 cut(s)	211, 233, 761
TspGWI	ACGGA	2 cut(s)	189, 244
TspRI	CASTG	2 cut(s)	394, 651
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	1 cut(s)	155
XceI	RCATGY	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	2 cut(s)	494, 801
XspI	CTAG	1 cut(s)	474
Zsp2I	ATGCAT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.