Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004668

Physical Location & Seq

Genomic Coordinates Forward (+)

57266706 .. 57267122

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0410000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGGCTCCGAAATAAGGCAGCTTTGAACTTGGTTGGATCGTCTCTGGGACGGGTAATCAGGTTCGATCAAACGGCGCTGCATCGGAAGGAGGAAGAACAGAGGATCCGGTTAGTTTTTGATGTTTGGTGGCAAATTAGGGTTTGGATGCTTTTTGAGTTTTCACCGGCGGTGGCGCAAGAATTGTCTTTTAATTATGAGAAGGTTAGAGGGTTCTGCCAGAGTTGTGGCTATTTTGAGCATGGGGAAACTGGCTGCGATGCTTTGTTGACCAAAGAGAAAGATGAGATCATGGCTCAGGTGCAGGCTACGGTCATGGCTGGGTTGTGGTTGACTGATGGGGCACATGGACTTCGTTCTGATGGGGAAGGCCAGCAGGATAAGATGGGAATGGTGATGTTGACTGAAGCCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

138

Amino Acids

15.62

Weight (kDa)

5.37

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC_4	PF14392	44 - 87	2.4e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05210 AT4G05210 AT4G05210 AT4G21220
fragaria_vesca	FvH4_3g02730 FvH4_3g02730 FvH4_3g02730 FvH4_3g02730
malus_domestica	MD05G1340500.v1.1 MD10G1313900.v1.1
prunus_persica	Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1
pyrus_communis	pycom05g30970
rosa_chinensis	RchiOBHm_Chr5g0004131
rosa_laevigata	RLG00000031204 RLG00000031207
rosa_multiflora	Rmu_sc0000547.1_g000033 Rmu_sc0010028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071660 Rroxscaffold_1G00071900
rosa_rugosa	Rorug04G0409900 Rorug04G0410000 Rorug04G0410100
rosa_samantha	Rh5AG037600 Rh5BG036900 Rh5CG040300 Rh5DG036300
rosa_wichuraiana	Rw5G003400 Rw5G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	3 cut(s)	46, 100, 113
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	28
AloI	GAACNNNNNNTCC	2 cut(s)	90, 122
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	3 cut(s)	46, 100, 113
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	3 cut(s)	20, 79, 255
AspLEI	GCGC	2 cut(s)	79, 178
AsuHPI	GGTGA	2 cut(s)	156, 406
BaeGI	GKGCMC	1 cut(s)	346
BamHI	GGATCC	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	9
BbvI	GCAGC	3 cut(s)	32, 66, 242
BccI	CCATC	3 cut(s)	332, 356, 379
BceAI	ACGGC	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	415
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	3 cut(s)	21, 80, 256
BlsI	GCNGC	3 cut(s)	22, 81, 257
BmiI	GGNNCC	2 cut(s)	8, 107
BmsI	GCATC	3 cut(s)	91, 138, 250
Bpu10I	CCTNAGC	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse118I	RCCGGY	2 cut(s)	166, 410
Bse1I	ACTGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	256
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	3 cut(s)	32, 66, 242
BseYI	CCCAGC	1 cut(s)	320
BsgI	GTGCAG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	372
BsiSI	CCGG	3 cut(s)	109, 167, 411
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	48
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	372
Bsp1286I	GDGCHC	2 cut(s)	9, 346
Bsp143I	GATC	4 cut(s)	38, 67, 105, 288
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	8, 107
BspPI	GGATC	3 cut(s)	46, 100, 113
BsrFI	RCCGGY	2 cut(s)	166, 410
BsrI	ACTGG	1 cut(s)	256
BssAI	RCCGGY	2 cut(s)	166, 410
BssMI	GATC	4 cut(s)	38, 67, 105, 288
Bst4CI	ACNGT	1 cut(s)	313
BstC8I	GCNNGC	3 cut(s)	306, 374, 412
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	79, 178
BstKTI	GATC	4 cut(s)	41, 70, 108, 291
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	4 cut(s)	38, 67, 105, 288
BstSLI	GKGCMC	1 cut(s)	346
BstV1I	GCAGC	3 cut(s)	32, 66, 242
BstX2I	RGATCY	1 cut(s)	105
BstXI	CCANNNNNNTGG	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	153
Cac8I	GCNNGC	3 cut(s)	306, 374, 412
CfoI	GCGC	2 cut(s)	79, 178
Cfr10I	RCCGGY	2 cut(s)	166, 410
CviAII	CATG	4 cut(s)	242, 292, 316, 347
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	4 cut(s)	40, 69, 107, 290
DpnII	GATC	4 cut(s)	38, 67, 105, 288
Eco24I	GRGCYC	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	4 cut(s)	245, 295, 319, 350
FaiI	YATR	5 cut(s)	198, 243, 293, 317, 348
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	4 cut(s)	241, 291, 315, 346
Fnu4HI	GCNGC	3 cut(s)	21, 80, 256
FokI	GGATG	1 cut(s)	160
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	3 cut(s)	21, 80, 256
FspBI	CTAG	1 cut(s)	415
GlaI	GCGC	2 cut(s)	78, 177
GluI	GCNGC	3 cut(s)	21, 80, 256
GsaI	CCCAGC	1 cut(s)	324
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	372
HapII	CCGG	3 cut(s)	109, 167, 411
HhaI	GCGC	2 cut(s)	79, 178
Hin1II	CATG	4 cut(s)	245, 295, 319, 350
Hin6I	GCGC	2 cut(s)	77, 176
HinP1I	GCGC	2 cut(s)	77, 176
HincII	GTYRAC	3 cut(s)	270, 333, 402
HindII	GTYRAC	3 cut(s)	270, 333, 402
HpaII	CCGG	3 cut(s)	109, 167, 411
HphI	GGTGA	2 cut(s)	156, 406
Hpy166II	GTNNAC	3 cut(s)	270, 333, 402
Hpy188I	TCNGA	3 cut(s)	11, 87, 361
Hpy8I	GTNNAC	3 cut(s)	270, 333, 402
HpyAV	CCTTC	3 cut(s)	82, 196, 362
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	2 cut(s)	82, 304
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	4 cut(s)	245, 295, 319, 350
HspAI	GCGC	2 cut(s)	77, 176
KroI	GCCGGC	1 cut(s)	410
KroNI	GCCGGC	1 cut(s)	412
Kzo9I	GATC	4 cut(s)	38, 67, 105, 288
LmnI	GCTCC	1 cut(s)	12
Lsp1109I	GCAGC	3 cut(s)	32, 66, 242
LweI	GCATC	3 cut(s)	91, 138, 250
MaeI	CTAG	1 cut(s)	415
MalI	GATC	4 cut(s)	40, 69, 107, 290
MboI	GATC	4 cut(s)	38, 67, 105, 288
MboII	GAAGA	1 cut(s)	107
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	2 cut(s)	9, 346
MluCI	AATT	3 cut(s)	135, 182, 193
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	3 cut(s)	85, 96, 203
MroNI	GCCGGC	1 cut(s)	410
MseI	TTAA	1 cut(s)	192
MspI	CCGG	3 cut(s)	109, 167, 411
NaeI	GCCGGC	1 cut(s)	412
NdeII	GATC	4 cut(s)	38, 67, 105, 288
NgoMIV	GCCGGC	1 cut(s)	410
NlaIII	CATG	4 cut(s)	245, 295, 319, 350
NlaIV	GGNNCC	2 cut(s)	8, 107
PdiI	GCCGGC	1 cut(s)	412
PkrI	GCNGC	3 cut(s)	22, 81, 257
PspFI	CCCAGC	1 cut(s)	320
PspN4I	GGNNCC	2 cut(s)	8, 107
PsuI	RGATCY	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	3 cut(s)	21, 80, 256
Sau3AI	GATC	4 cut(s)	38, 67, 105, 288
SduI	GDGCHC	2 cut(s)	9, 346
SetI	ASST	4 cut(s)	25, 65, 207, 303
SfaNI	GCATC	3 cut(s)	91, 138, 250
SgrAI	CRCCGGYG	1 cut(s)	166
Sse9I	AATT	3 cut(s)	135, 182, 193
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	313
TaqI	TCGA	1 cut(s)	66
TasI	AATT	3 cut(s)	135, 182, 193
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseI	GCWGC	3 cut(s)	20, 79, 255
XspI	CTAG	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.