Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004668

Physical Location & Seq

Genomic Coordinates Reverse (-)

2643439 .. 2655222

Gene Structure 11784 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG040300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCACTCCAGCTTAGAAGACTTGCGGCTGCATTGGGATGCACGCCACAACAAGTTCGCGCCTTGTCTCAATTGGGCTTTGGAGCCTGTTACAGTTCCATTGCTTCCTCTGACTCCTCTGATTATGGGGATGGAACTAAACCCCAAGATTTCCAAAGCTGGCCTAATGGAGGTGGGTCTTTTCACAAGTCTGCCAGCATTGACCCAACAGCTTTTGTGGAGTTTGGTGCTGTTGTGCATTCGAAATCCATTGTGGGTGGACATGTTTGTATTGGTTCTGGAGCTGTTATTGGACCTGGTGTTTCAGTTGGGCAATCGACCAAAATAGGCTACAATGTTTCACTTAGTAATTGCACTGTAGGAGATTCGTGTATAATCCACAATGGCGCATGCATCGGTCAAGATGGATTTGGGTTTATGGTGGATGAGCATGGCAATATGTTAAAGAAGCCTCAGATGCTGAATGCTAGGATAGGGAACTGTGTGGAGATTGGTGCAAATACATGCATTGACAGGGGTAGTTGGAGAGATACAGTTGTAGGAGATCATTCGAAGATTGATAATTTAGTTCAGATTGGTCATAATGTAGTTATTGGGGAGAATTGCATGCTTTGTGGTCAAGTTGGGATTGCAGGCTCAGTGACGGTAGGAGACTATGTGACTATGGGAGGAAGGGTAGCAGTTCGTGACCATGTCTCCATTGTATCAAAGGTATTTGCACTAAGAGCCAGTCGAGTGCCTAAAGTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

250

Amino Acids

25.93

Weight (kDa)

7.58

Isoelectric Point (pI)

29.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMPPB_C	PF25087	83 - 132	2.6e-06	GMPPB C-terminal domain
Hexapep	PF00132	177 - 212	6.9e-08	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05210 AT4G05210 AT4G05210 AT4G21220
fragaria_vesca	FvH4_3g02730 FvH4_3g02730 FvH4_3g02730 FvH4_3g02730
malus_domestica	MD05G1340500.v1.1 MD10G1313900.v1.1
prunus_persica	Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1
pyrus_communis	pycom05g30970
rosa_chinensis	RchiOBHm_Chr5g0004131
rosa_laevigata	RLG00000031204 RLG00000031207
rosa_multiflora	Rmu_sc0000547.1_g000033 Rmu_sc0010028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071660 Rroxscaffold_1G00071900
rosa_rugosa	Rorug04G0409900 Rorug04G0410000 Rorug04G0410100
rosa_samantha	Rh5AG037600 Rh5BG036900 Rh5CG040300 Rh5DG036300
rosa_wichuraiana	Rw5G003400 Rw5G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	60
AciI	CCGC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	170
AflIII	ACRYGT	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	4 cut(s)	13, 159, 212, 284
AluI	AGCT	4 cut(s)	13, 159, 212, 284
Alw26I	GTCTC	3 cut(s)	72, 645, 700
AlwNI	CAGNNNCTG	1 cut(s)	460
AoxI	GGCC	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	29
AspLEI	GCGC	2 cut(s)	62, 389
AspS9I	GGNCC	1 cut(s)	293
AsuII	TTCGAA	2 cut(s)	242, 551
AvaII	GGWCC	1 cut(s)	293
BaeI	ACNNNNGTAYC	2 cut(s)	522, 555
BbsI	GAAGAC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	125, 398
BciT130I	CCWGG	1 cut(s)	297
BcoDI	GTCTC	3 cut(s)	72, 645, 700
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	2 cut(s)	27, 30
BlsI	GCNGC	2 cut(s)	28, 31
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	3 cut(s)	29, 402, 447
BpiI	GAAGAC	1 cut(s)	25
BpmI	CTGGAG	1 cut(s)	300
Bpu14I	TTCGAA	2 cut(s)	242, 551
BsaXI	ACNNNNNCTCC	6 cut(s)	642, 660, 672, 680, 690, 710
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	729
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	297
BseGI	GGATG	3 cut(s)	44, 136, 430
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	467, 651
BseNI	ACTGG	1 cut(s)	729
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	3 cut(s)	72, 645, 700
BsmI	GAATGC	2 cut(s)	238, 469
BsnI	GGCC	1 cut(s)	163
Bsp119I	TTCGAA	2 cut(s)	242, 551
Bsp143I	GATC	1 cut(s)	544
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	2 cut(s)	466, 650
BspFNI	CGCG	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	749
BspLI	GGNNCC	1 cut(s)	85
BspT104I	TTCGAA	2 cut(s)	242, 551
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	729
BssMI	GATC	1 cut(s)	544
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	5 cut(s)	95, 358, 482, 535, 646
BstBI	TTCGAA	2 cut(s)	242, 551
BstC8I	GCNNGC	6 cut(s)	44, 161, 196, 391, 608, 634
BstDEI	CTNAG	5 cut(s)	14, 344, 453, 637, 722
BstENI	CCTNNNNNAGG	1 cut(s)	168
BstF5I	GGATG	3 cut(s)	44, 136, 430
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	62, 389
BstKTI	GATC	1 cut(s)	547
BstMAI	GTCTC	3 cut(s)	72, 645, 700
BstMBI	GATC	1 cut(s)	544
BstMWI	GCNNNNNNNGC	2 cut(s)	457, 725
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	4 cut(s)	266, 393, 507, 610
BstSCI	CCNGG	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	163
BtsCI	GGATG	3 cut(s)	44, 136, 430
BtsIMutI	CAGTG	2 cut(s)	354, 645
Cac8I	GCNNGC	6 cut(s)	44, 161, 196, 391, 608, 634
CaiI	CAGNNNCTG	1 cut(s)	460
CciI	TCATGA	1 cut(s)	749
CfoI	GCGC	2 cut(s)	62, 389
Cfr13I	GGNCC	1 cut(s)	293
CsiI	ACCWGGT	1 cut(s)	295
CviAII	CATG	7 cut(s)	263, 390, 431, 504, 607, 692, 750
DdeI	CTNAG	5 cut(s)	14, 344, 453, 637, 722
DpnI	GATC	1 cut(s)	546
DpnII	GATC	1 cut(s)	544
Eco47I	GGWCC	1 cut(s)	293
EcoNI	CCTNNNNNAGG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	295
EcoT22I	ATGCAT	2 cut(s)	395, 509
FaeI	CATG	7 cut(s)	266, 393, 434, 507, 610, 695, 753
FatI	CATG	7 cut(s)	262, 389, 430, 503, 606, 691, 749
Fnu4HI	GCNGC	2 cut(s)	27, 30
FokI	GGATG	3 cut(s)	51, 143, 437
Fsp4HI	GCNGC	2 cut(s)	27, 30
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	2 cut(s)	61, 388
GluI	GCNGC	2 cut(s)	27, 30
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	163
HhaI	GCGC	2 cut(s)	62, 389
Hin1II	CATG	7 cut(s)	266, 393, 434, 507, 610, 695, 753
Hin6I	GCGC	2 cut(s)	60, 387
HinP1I	GCGC	2 cut(s)	60, 387
HinfI	GANTC	2 cut(s)	113, 365
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	4 cut(s)	112, 121, 456, 573
Hpy188III	TCNNGA	4 cut(s)	279, 401, 686, 750
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	666
HpyCH4III	ACNGT	5 cut(s)	95, 358, 482, 535, 646
HpyF10VI	GCNNNNNNNGC	2 cut(s)	457, 725
HpyF3I	CTNAG	5 cut(s)	14, 344, 453, 637, 722
Hsp92II	CATG	7 cut(s)	266, 393, 434, 507, 610, 695, 753
HspAI	GCGC	2 cut(s)	60, 387
Kzo9I	GATC	1 cut(s)	544
LmnI	GCTCC	2 cut(s)	83, 281
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	3 cut(s)	29, 402, 447
MabI	ACCWGGT	1 cut(s)	295
MaeI	CTAG	1 cut(s)	468
MaeIII	GTNAC	4 cut(s)	89, 640, 658, 686
MalI	GATC	1 cut(s)	546
MboI	GATC	1 cut(s)	544
MboII	GAAGA	2 cut(s)	30, 565
MfeI	CAATTG	1 cut(s)	71
MluCI	AATT	4 cut(s)	71, 349, 562, 601
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	503
MnlI	CCTC	5 cut(s)	118, 127, 164, 462, 662
Mph1103I	ATGCAT	2 cut(s)	395, 509
MseI	TTAA	1 cut(s)	443
MslI	CAYNNNNRTG	1 cut(s)	37
MspR9I	CCNGG	1 cut(s)	297
MunI	CAATTG	1 cut(s)	71
Mva1269I	GAATGC	2 cut(s)	238, 469
MvaI	CCWGG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	457, 725
NdeII	GATC	1 cut(s)	544
NlaIII	CATG	7 cut(s)	266, 393, 434, 507, 610, 695, 753
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	3 cut(s)	640, 658, 686
NsiI	ATGCAT	2 cut(s)	395, 509
NspI	RCATGY	4 cut(s)	266, 393, 507, 610
NspV	TTCGAA	2 cut(s)	242, 551
PaeI	GCATGC	2 cut(s)	393, 610
PagI	TCATGA	1 cut(s)	749
PciI	ACATGT	1 cut(s)	262
PctI	GAATGC	2 cut(s)	238, 469
PfeI	GAWTC	1 cut(s)	365
PflFI	GACNNNGTC	1 cut(s)	692
PkrI	GCNGC	2 cut(s)	28, 31
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PscI	ACATGT	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	293
PstNI	CAGNNNCTG	1 cut(s)	460
PsyI	GACNNNGTC	1 cut(s)	692
RseI	CAYNNNNRTG	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	2 cut(s)	27, 30
Sau3AI	GATC	1 cut(s)	544
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	297
SetI	ASST	7 cut(s)	15, 161, 175, 214, 286, 298, 714
SexAI	ACCWGGT	1 cut(s)	295
SfaNI	GCATC	3 cut(s)	29, 402, 447
SfcI	CTRYAG	1 cut(s)	357
SfuI	TTCGAA	2 cut(s)	242, 551
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	37
SphI	GCATGC	2 cut(s)	393, 610
Sse9I	AATT	4 cut(s)	71, 349, 562, 601
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	5 cut(s)	95, 358, 482, 535, 646
TaqI	TCGA	4 cut(s)	242, 317, 551, 733
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	4 cut(s)	71, 349, 562, 601
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	2 cut(s)	361, 645
TseFI	GTSAC	3 cut(s)	640, 658, 686
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	3 cut(s)	640, 658, 686
TspDTI	ATGAA	1 cut(s)	738
TspRI	CASTG	2 cut(s)	361, 645
Tth111I	GACNNNGTC	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	293
XagI	CCTNNNNNAGG	1 cut(s)	168
XceI	RCATGY	4 cut(s)	266, 393, 507, 610
XspI	CTAG	1 cut(s)	468
Zsp2I	ATGCAT	2 cut(s)	395, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.