Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004668

Physical Location & Seq

Genomic Coordinates Reverse (-)

1384043 .. 1386849

Gene Structure 2807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02730.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCACTAGTGCTTAGAAGAGTTGCAGCTGCATTGGGATGCACGCCACACCACATTCGAGTCTTGTCTCAATTGGGTTTTGGCCCTTGTTATAGTTCCATTGTTGGGTCTGATTCGTCTGATTTCCAGAGCTGGCCTAATGGAGGTGGGTGCTTTCACAAGTCAGCCAGCATTGACCCAACAGCTTTTGTGGAGATTGGTGCTGTTGTGCATTCGAAAGCCGTTGTGGGTGAACATGTTTGTATTGGTTCTGGAGCTGTTATTGGACCTGGTGTTTCAGTTGGGCAATCGACGAAAATAGGCTTCAATGTTTCACTTAGTAACTGCACTATAGGAGATTCGTGTATAATCCACAATGGCACATGCATCGGTCAAGATGGATTTGGGTTTATGGTGGATGAGTATGGGAAAATGTTAAAGAAGCCTCAGATGCTGAATGCTAGGATAGGGAACTTTGTGGAGATTGGTGCAAATACATGCATCGACAGGGGAAGTTGGAGAGATACCGTTGTAGGAGATCATTCGAAGATTGATAATTTAGTTCAGATTGGTCATAATGTAGTTATTGGGGAGAACTGCATGCTTTGTGGTCAAGTTGGGATTGCAGGCTCGGTGACGATAGGAGACTATGTGACTATGGGAGGAAGGGTAGCGGTTCGTGACCATGTTTCCATTGTATCAAAGGTTCGGCTTGCTGCTACTAGCTGTGTTACGAGGGACATTAAAGAAGCTGGAGATTATGGTGGCTTCCCAGCTGTTCCAATCCGCGAGTGGCGGAGACAAGTTGCAATCCACAGTCAGACATCAACAAAGCGGAACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

275

Amino Acids

28.86

Weight (kDa)

8.3

Isoelectric Point (pI)

29.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMPPB_C	PF25087	75 - 123	2e-06	GMPPB C-terminal domain
Hexapep	PF00132	168 - 203	7.1e-08	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05210 AT4G05210 AT4G05210 AT4G21220
fragaria_vesca	FvH4_3g02730 FvH4_3g02730 FvH4_3g02730 FvH4_3g02730
malus_domestica	MD05G1340500.v1.1 MD10G1313900.v1.1
prunus_persica	Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1
pyrus_communis	pycom05g30970
rosa_chinensis	RchiOBHm_Chr5g0004131
rosa_laevigata	RLG00000031204 RLG00000031207
rosa_multiflora	Rmu_sc0000547.1_g000033 Rmu_sc0010028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071660 Rroxscaffold_1G00071900
rosa_rugosa	Rorug04G0409900 Rorug04G0410000 Rorug04G0410100
rosa_samantha	Rh5AG037600 Rh5BG036900 Rh5CG040300 Rh5DG036300
rosa_wichuraiana	Rw5G003400 Rw5G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	768
AciI	CCGC	4 cut(s)	653, 766, 775, 814
AfiI	CCNNNNNNNGG	2 cut(s)	105, 143
AflIII	ACRYGT	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	307
AhlI	ACTAGT	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	7 cut(s)	29, 132, 185, 257, 705, 731, 755
AluI	AGCT	7 cut(s)	29, 132, 185, 257, 705, 731, 755
Alw26I	GTCTC	3 cut(s)	72, 618, 772
AlwNI	CAGNNNCTG	1 cut(s)	433
AoxI	GGCC	2 cut(s)	82, 134
ApeKI	GCWGC	3 cut(s)	26, 29, 695
AspS9I	GGNCC	2 cut(s)	83, 266
AsuHPI	GGTGA	2 cut(s)	242, 625
AsuII	TTCGAA	2 cut(s)	215, 524
AvaII	GGWCC	1 cut(s)	266
BaeI	ACNNNNGTAYC	2 cut(s)	495, 528
BbvI	GCAGC	3 cut(s)	16, 38, 682
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	1 cut(s)	206
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BciT130I	CCWGG	1 cut(s)	270
BcoDI	GTCTC	3 cut(s)	72, 618, 772
BcuI	ACTAGT	1 cut(s)	7
BfaI	CTAG	3 cut(s)	8, 441, 702
BfmI	CTRYAG	1 cut(s)	330
BisI	GCNGC	3 cut(s)	27, 30, 696
BlsI	GCNGC	3 cut(s)	28, 31, 697
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	83, 266
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	4 cut(s)	29, 375, 420, 489
BpmI	CTGGAG	2 cut(s)	273, 753
Bpu14I	TTCGAA	2 cut(s)	215, 524
BsaXI	ACNNNNNCTCC	4 cut(s)	615, 633, 645, 663
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 143
BseBI	CCWGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	44, 403
BseLI	CCNNNNNNNGG	2 cut(s)	105, 143
BseMII	CTCAG	1 cut(s)	440
BseXI	GCAGC	3 cut(s)	16, 38, 682
BseYI	CCCAGC	1 cut(s)	751
BsgI	GTGCAG	1 cut(s)	310
Bsh1236I	CGCG	1 cut(s)	768
BshFI	GGCC	2 cut(s)	84, 136
BslFI	GGGAC	1 cut(s)	731
BslI	CCNNNNNNNGG	2 cut(s)	105, 143
BsmAI	GTCTC	3 cut(s)	72, 618, 772
BsmFI	GGGAC	1 cut(s)	731
BsmI	GAATGC	2 cut(s)	211, 442
BsnI	GGCC	2 cut(s)	84, 136
Bsp119I	TTCGAA	2 cut(s)	215, 524
Bsp143I	GATC	1 cut(s)	517
BspACI	CCGC	4 cut(s)	653, 766, 775, 814
BspANI	GGCC	2 cut(s)	84, 136
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	768
BspT104I	TTCGAA	2 cut(s)	215, 524
BssMI	GATC	1 cut(s)	517
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	2 cut(s)	508, 797
Bst6I	CTCTTC	1 cut(s)	13
BstBI	TTCGAA	2 cut(s)	215, 524
BstC8I	GCNNGC	6 cut(s)	44, 134, 169, 581, 607, 693
BstDEI	CTNAG	4 cut(s)	14, 317, 426, 822
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	44, 403
BstFNI	CGCG	1 cut(s)	768
BstKTI	GATC	1 cut(s)	520
BstMAI	GTCTC	3 cut(s)	72, 618, 772
BstMBI	GATC	1 cut(s)	517
BstMWI	GCNNNNNNNGC	1 cut(s)	430
BstNI	CCWGG	1 cut(s)	270
BstNSI	RCATGY	4 cut(s)	239, 366, 480, 583
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	1 cut(s)	768
BstV1I	GCAGC	3 cut(s)	16, 38, 682
BsuRI	GGCC	2 cut(s)	84, 136
BtsCI	GGATG	2 cut(s)	44, 403
Cac8I	GCNNGC	6 cut(s)	44, 134, 169, 581, 607, 693
CaiI	CAGNNNCTG	1 cut(s)	433
Cfr13I	GGNCC	2 cut(s)	83, 266
CsiI	ACCWGGT	1 cut(s)	268
CviAII	CATG	5 cut(s)	236, 363, 477, 580, 665
DdeI	CTNAG	4 cut(s)	14, 317, 426, 822
DpnI	GATC	1 cut(s)	519
DpnII	GATC	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
EciI	GGCGGA	1 cut(s)	790
Eco47I	GGWCC	1 cut(s)	266
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	268
EcoT22I	ATGCAT	2 cut(s)	368, 482
FaeI	CATG	5 cut(s)	239, 366, 480, 583, 668
FaqI	GGGAC	1 cut(s)	731
FatI	CATG	5 cut(s)	235, 362, 476, 579, 664
Fnu4HI	GCNGC	3 cut(s)	27, 30, 696
FokI	GGATG	2 cut(s)	51, 410
Fsp4HI	GCNGC	3 cut(s)	27, 30, 696
FspBI	CTAG	3 cut(s)	8, 441, 702
GluI	GCNGC	3 cut(s)	27, 30, 696
GsaI	CCCAGC	1 cut(s)	755
GsuI	CTGGAG	2 cut(s)	273, 753
HaeIII	GGCC	2 cut(s)	84, 136
Hin1II	CATG	5 cut(s)	239, 366, 480, 583, 668
HinfI	GANTC	3 cut(s)	60, 113, 338
HphI	GGTGA	2 cut(s)	242, 625
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	5 cut(s)	112, 121, 429, 546, 801
Hpy188III	TCNNGA	4 cut(s)	127, 252, 374, 659
Hpy8I	GTNNAC	1 cut(s)	233
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	639
HpyCH4III	ACNGT	2 cut(s)	508, 797
HpyF10VI	GCNNNNNNNGC	1 cut(s)	430
HpyF3I	CTNAG	4 cut(s)	14, 317, 426, 822
Hsp92II	CATG	5 cut(s)	239, 366, 480, 583, 668
Kzo9I	GATC	1 cut(s)	517
LmnI	GCTCC	1 cut(s)	254
Lsp1109I	GCAGC	3 cut(s)	16, 38, 682
LweI	GCATC	4 cut(s)	29, 375, 420, 489
MabI	ACCWGGT	1 cut(s)	268
MaeI	CTAG	3 cut(s)	8, 441, 702
MaeIII	GTNAC	5 cut(s)	320, 613, 631, 659, 709
MalI	GATC	1 cut(s)	519
MboI	GATC	1 cut(s)	517
MboII	GAAGA	2 cut(s)	30, 538
MfeI	CAATTG	1 cut(s)	71
MluCI	AATT	2 cut(s)	71, 535
MlyI	GAGTC	1 cut(s)	69
MmeI	TCCRAC	1 cut(s)	476
MnlI	CCTC	4 cut(s)	137, 435, 635, 708
Mph1103I	ATGCAT	2 cut(s)	368, 482
MseI	TTAA	2 cut(s)	416, 723
MslI	CAYNNNNRTG	1 cut(s)	37
MspA1I	CMGCKG	2 cut(s)	29, 755
MspR9I	CCNGG	1 cut(s)	270
MunI	CAATTG	1 cut(s)	71
Mva1269I	GAATGC	2 cut(s)	211, 442
MvaI	CCWGG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	768
MwoI	GCNNNNNNNGC	1 cut(s)	430
NdeII	GATC	1 cut(s)	517
NlaIII	CATG	5 cut(s)	239, 366, 480, 583, 668
NmuCI	GTSAC	3 cut(s)	613, 631, 659
NsiI	ATGCAT	2 cut(s)	368, 482
NspI	RCATGY	4 cut(s)	239, 366, 480, 583
NspV	TTCGAA	2 cut(s)	215, 524
PaeI	GCATGC	1 cut(s)	583
PciI	ACATGT	1 cut(s)	235
PctI	GAATGC	2 cut(s)	211, 442
PfeI	GAWTC	2 cut(s)	113, 338
PkrI	GCNGC	3 cut(s)	28, 31, 697
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PscI	ACATGT	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	751
PspGI	CCWGG	1 cut(s)	268
PspPI	GGNCC	2 cut(s)	83, 266
PsrI	GAACNNNNNNTAC	2 cut(s)	669, 701
PstNI	CAGNNNCTG	1 cut(s)	433
PvuII	CAGCTG	2 cut(s)	29, 755
RseI	CAYNNNNRTG	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	416, 723
SatI	GCNGC	3 cut(s)	27, 30, 696
Sau3AI	GATC	1 cut(s)	517
Sau96I	GGNCC	2 cut(s)	83, 266
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	270
SexAI	ACCWGGT	1 cut(s)	268
SfaNI	GCATC	4 cut(s)	29, 375, 420, 489
SfcI	CTRYAG	1 cut(s)	330
SfuI	TTCGAA	2 cut(s)	215, 524
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	37
SpeI	ACTAGT	1 cut(s)	7
SphI	GCATGC	1 cut(s)	583
Sse9I	AATT	2 cut(s)	71, 535
SsiI	CCGC	4 cut(s)	653, 766, 775, 814
SspMI	CTAG	3 cut(s)	8, 441, 702
StyD4I	CCNGG	1 cut(s)	268
TaaI	ACNGT	2 cut(s)	508, 797
TaqI	TCGA	5 cut(s)	58, 215, 290, 483, 524
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	2 cut(s)	71, 535
TfiI	GAWTC	2 cut(s)	113, 338
Tru1I	TTAA	2 cut(s)	416, 723
Tru9I	TTAA	2 cut(s)	416, 723
TseFI	GTSAC	3 cut(s)	613, 631, 659
TseI	GCWGC	3 cut(s)	26, 29, 695
Tsp45I	GTSAC	3 cut(s)	613, 631, 659
VpaK11BI	GGWCC	1 cut(s)	266
XagI	CCTNNNNNAGG	1 cut(s)	141
XceI	RCATGY	4 cut(s)	239, 366, 480, 583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	768
XspI	CTAG	3 cut(s)	8, 441, 702
Zsp2I	ATGCAT	2 cut(s)	368, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.