Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004668

Physical Location & Seq

Genomic Coordinates Forward (+)

92682835 .. 92685644

Gene Structure 2810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCACTCCAGCTTAGAAGACTTGCAGCTGCATTGGGATACCCGCCACAACAAGTTCGAGCCTTGTCTCAATTGGGCTTTGGAGTCTGTTACAGTTCCATTGCTTCCTCTGACTCCTCTGATTCTGGGGTTGGAACTAAACCCCAAGATTTCCAAAGCTGGCCTAATGGAGGTGGGTCTTTTCACAAGTCTGCCAGCATTGACCCAACAGCTTTTGTGGAGTTTGGTGCTGTTGTGCATTCGAAGTCCGTTGTGGGTGAGCATGTTTGTATTGGTTCTGGAGCTGTTATTGGTCCTGGTGTTTCAGTTGGGCAATCGACCAAAATAGGCTACAATGTTTCACTTAGTAATTGCACTATAGGAGATTCGTGTATAATCCACAATGGCGCATGCATCGGTCAAGATGGATTTGGGTTTATGGTGGACGAGCATGGGAATATGTTAAAGAAGCCTCAGATGCTAAATGCTAGGATAGGGAACTGTGTGGAGATTGGTGCAAATACATGCATTGACAGGGGTAGTTGGAGAGATACAGTTGTAGGAGATCATTCGAAGATTGATAATTTAGTTCAGATTGGTCATAATGTAGTTATTGGGGAGAATTGCATGCTTTGTGGTCAAGTTGGGATTGCAGGCTCAGTGACGGTAGGAGACTATGTGACTATGGGAGGAAGGGTAGCAGTTCGTGACCATGTCTCCATTGTATCAAAGGTACGGCTTGCTGCTACTAGCTTTGTCACAAGGGACATTAAAGAACCTGGAGATTACGGTGGCTTCCCAGCTGTTCCAATTCGCGAGTGGCGAAGACAAGTTGCAATCCACAGTCGGACATCAACAAAGCGGAACCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

283

Amino Acids

29.8

Weight (kDa)

8.38

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMPPB_C	PF25087	82 - 132	8.3e-07	GMPPB C-terminal domain
Hexapep	PF00132	177 - 212	7.6e-08	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05210 AT4G05210 AT4G05210 AT4G21220
fragaria_vesca	FvH4_3g02730 FvH4_3g02730 FvH4_3g02730 FvH4_3g02730
malus_domestica	MD05G1340500.v1.1 MD10G1313900.v1.1
prunus_persica	Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1
pyrus_communis	pycom05g30970
rosa_chinensis	RchiOBHm_Chr5g0004131
rosa_laevigata	RLG00000031204 RLG00000031207
rosa_multiflora	Rmu_sc0000547.1_g000033 Rmu_sc0010028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071660 Rroxscaffold_1G00071900
rosa_rugosa	Rorug04G0409900 Rorug04G0410000 Rorug04G0410100
rosa_samantha	Rh5AG037600 Rh5BG036900 Rh5CG040300 Rh5DG036300
rosa_wichuraiana	Rw5G003400 Rw5G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	795
AciI	CCGC	2 cut(s)	44, 841
AfaI	GTAC	1 cut(s)	714
AfiI	CCNNNNNNNGG	1 cut(s)	170
AjnI	CCWGG	2 cut(s)	295, 757
AluBI	AGCT	7 cut(s)	13, 29, 159, 212, 284, 732, 782
AluI	AGCT	7 cut(s)	13, 29, 159, 212, 284, 732, 782
Alw26I	GTCTC	3 cut(s)	72, 645, 700
AoxI	GGCC	1 cut(s)	161
ApeKI	GCWGC	3 cut(s)	26, 29, 722
AspLEI	GCGC	1 cut(s)	389
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	269
AsuII	TTCGAA	2 cut(s)	242, 551
AvaII	GGWCC	1 cut(s)	293
BaeI	ACNNNNGTAYC	2 cut(s)	522, 555
BbsI	GAAGAC	2 cut(s)	25, 811
BbvI	GCAGC	3 cut(s)	16, 38, 709
BccI	CCATC	1 cut(s)	398
BceAI	ACGGC	1 cut(s)	731
BciT130I	CCWGG	2 cut(s)	297, 759
BciVI	GTATCC	1 cut(s)	32
BcoDI	GTCTC	3 cut(s)	72, 645, 700
BfaI	CTAG	2 cut(s)	468, 729
BfmI	CTRYAG	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	27, 30, 723
BlsI	GCNGC	3 cut(s)	28, 31, 724
Bme1390I	CCNGG	2 cut(s)	297, 759
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	845
BmrFI	CCNGG	2 cut(s)	297, 759
BmsI	GCATC	2 cut(s)	402, 447
BpiI	GAAGAC	2 cut(s)	25, 811
BpmI	CTGGAG	2 cut(s)	300, 780
Bpu14I	TTCGAA	2 cut(s)	242, 551
BsaXI	ACNNNNNCTCC	6 cut(s)	642, 660, 672, 680, 690, 710
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	2 cut(s)	297, 759
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	467, 651
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	16, 38, 709
BseYI	CCCAGC	1 cut(s)	778
Bsh1236I	CGCG	1 cut(s)	795
BshFI	GGCC	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	758
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	3 cut(s)	72, 645, 700
BsmFI	GGGAC	1 cut(s)	758
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	163
Bsp119I	TTCGAA	2 cut(s)	242, 551
Bsp143I	GATC	1 cut(s)	544
Bsp68I	TCGCGA	1 cut(s)	795
BspACI	CCGC	2 cut(s)	44, 841
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	2 cut(s)	466, 650
BspFNI	CGCG	1 cut(s)	795
BspLI	GGNNCC	1 cut(s)	845
BspT104I	TTCGAA	2 cut(s)	242, 551
BsrDI	GCAATG	1 cut(s)	99
BssMI	GATC	1 cut(s)	544
Bst2UI	CCWGG	2 cut(s)	297, 759
Bst4CI	ACNGT	6 cut(s)	95, 482, 535, 646, 770, 824
BstBI	TTCGAA	2 cut(s)	242, 551
BstC8I	GCNNGC	6 cut(s)	161, 196, 391, 608, 634, 720
BstDEI	CTNAG	5 cut(s)	14, 344, 453, 637, 849
BstENI	CCTNNNNNAGG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	795
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	1 cut(s)	547
BstMAI	GTCTC	3 cut(s)	72, 645, 700
BstMBI	GATC	1 cut(s)	544
BstMWI	GCNNNNNNNGC	1 cut(s)	457
BstNI	CCWGG	2 cut(s)	297, 759
BstNSI	RCATGY	4 cut(s)	266, 393, 507, 610
BstSCI	CCNGG	2 cut(s)	295, 757
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	795
BstV1I	GCAGC	3 cut(s)	16, 38, 709
BstV2I	GAAGAC	2 cut(s)	25, 811
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	645
BtuMI	TCGCGA	1 cut(s)	795
Cac8I	GCNNGC	6 cut(s)	161, 196, 391, 608, 634, 720
CfoI	GCGC	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	713
CviAII	CATG	6 cut(s)	263, 390, 431, 504, 607, 692
CviQI	GTAC	1 cut(s)	713
DdeI	CTNAG	5 cut(s)	14, 344, 453, 637, 849
DpnI	GATC	1 cut(s)	546
DpnII	GATC	1 cut(s)	544
Eco47I	GGWCC	1 cut(s)	293
EcoNI	CCTNNNNNAGG	1 cut(s)	168
EcoRII	CCWGG	2 cut(s)	295, 757
EcoT22I	ATGCAT	2 cut(s)	395, 509
FaeI	CATG	6 cut(s)	266, 393, 434, 507, 610, 695
FaqI	GGGAC	1 cut(s)	758
FatI	CATG	6 cut(s)	262, 389, 430, 503, 606, 691
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	27, 30, 723
Fsp4HI	GCNGC	3 cut(s)	27, 30, 723
FspBI	CTAG	2 cut(s)	468, 729
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	3 cut(s)	27, 30, 723
GsaI	CCCAGC	1 cut(s)	782
GsuI	CTGGAG	2 cut(s)	300, 780
HaeIII	GGCC	1 cut(s)	163
HhaI	GCGC	1 cut(s)	389
Hin1II	CATG	6 cut(s)	266, 393, 434, 507, 610, 695
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HinfI	GANTC	4 cut(s)	84, 113, 122, 365
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	5 cut(s)	112, 121, 456, 573, 828
Hpy188III	TCNNGA	4 cut(s)	279, 401, 686, 794
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	1 cut(s)	666
HpyCH4III	ACNGT	6 cut(s)	95, 482, 535, 646, 770, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	457
HpyF3I	CTNAG	5 cut(s)	14, 344, 453, 637, 849
Hsp92II	CATG	6 cut(s)	266, 393, 434, 507, 610, 695
HspAI	GCGC	1 cut(s)	387
Kzo9I	GATC	1 cut(s)	544
LmnI	GCTCC	1 cut(s)	281
Lsp1109I	GCAGC	3 cut(s)	16, 38, 709
LweI	GCATC	2 cut(s)	402, 447
MaeI	CTAG	2 cut(s)	468, 729
MaeIII	GTNAC	5 cut(s)	89, 640, 658, 686, 736
MalI	GATC	1 cut(s)	546
MboI	GATC	1 cut(s)	544
MboII	GAAGA	3 cut(s)	30, 565, 816
MfeI	CAATTG	1 cut(s)	71
MluCI	AATT	5 cut(s)	71, 349, 562, 601, 789
MlyI	GAGTC	2 cut(s)	93, 107
MmeI	TCCRAC	3 cut(s)	112, 503, 806
MnlI	CCTC	5 cut(s)	118, 127, 164, 462, 662
Mph1103I	ATGCAT	2 cut(s)	395, 509
MseI	TTAA	2 cut(s)	443, 750
MspA1I	CMGCKG	2 cut(s)	29, 782
MspR9I	CCNGG	2 cut(s)	297, 759
MunI	CAATTG	1 cut(s)	71
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	2 cut(s)	297, 759
MvnI	CGCG	1 cut(s)	795
MwoI	GCNNNNNNNGC	1 cut(s)	457
NdeII	GATC	1 cut(s)	544
NlaIII	CATG	6 cut(s)	266, 393, 434, 507, 610, 695
NlaIV	GGNNCC	1 cut(s)	845
NmuCI	GTSAC	4 cut(s)	640, 658, 686, 736
NruI	TCGCGA	1 cut(s)	795
NsiI	ATGCAT	2 cut(s)	395, 509
NspI	RCATGY	4 cut(s)	266, 393, 507, 610
NspV	TTCGAA	2 cut(s)	242, 551
PaeI	GCATGC	2 cut(s)	393, 610
PcsI	WCGNNNNNNNCGW	1 cut(s)	799
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	122, 365
PflFI	GACNNNGTC	1 cut(s)	692
PkrI	GCNGC	3 cut(s)	28, 31, 724
PleI	GAGTC	2 cut(s)	92, 107
PpsI	GAGTC	2 cut(s)	92, 107
Psp6I	CCWGG	2 cut(s)	295, 757
PspFI	CCCAGC	1 cut(s)	778
PspGI	CCWGG	2 cut(s)	295, 757
PspN4I	GGNNCC	1 cut(s)	845
PspPI	GGNCC	1 cut(s)	293
PsyI	GACNNNGTC	1 cut(s)	692
PvuII	CAGCTG	2 cut(s)	29, 782
RruI	TCGCGA	1 cut(s)	795
RsaI	GTAC	1 cut(s)	714
RsaNI	GTAC	1 cut(s)	713
SaqAI	TTAA	2 cut(s)	443, 750
SatI	GCNGC	3 cut(s)	27, 30, 723
Sau3AI	GATC	1 cut(s)	544
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	2 cut(s)	93, 107
ScrFI	CCNGG	2 cut(s)	297, 759
SfaNI	GCATC	2 cut(s)	402, 447
SfcI	CTRYAG	1 cut(s)	357
SfuI	TTCGAA	2 cut(s)	242, 551
SinI	GGWCC	1 cut(s)	293
SphI	GCATGC	2 cut(s)	393, 610
Sse9I	AATT	5 cut(s)	71, 349, 562, 601, 789
SsiI	CCGC	2 cut(s)	44, 841
SspMI	CTAG	2 cut(s)	468, 729
StyD4I	CCNGG	2 cut(s)	295, 757
TaaI	ACNGT	6 cut(s)	95, 482, 535, 646, 770, 824
TaqI	TCGA	4 cut(s)	58, 242, 317, 551
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	5 cut(s)	71, 349, 562, 601, 789
TfiI	GAWTC	2 cut(s)	122, 365
Tru1I	TTAA	2 cut(s)	443, 750
Tru9I	TTAA	2 cut(s)	443, 750
TscAI	CASTG	1 cut(s)	645
TseFI	GTSAC	4 cut(s)	640, 658, 686, 736
TseI	GCWGC	3 cut(s)	26, 29, 722
Tsp45I	GTSAC	4 cut(s)	640, 658, 686, 736
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	1 cut(s)	645
Tth111I	GACNNNGTC	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	293
XagI	CCTNNNNNAGG	1 cut(s)	168
XceI	RCATGY	4 cut(s)	266, 393, 507, 610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	795
XspI	CTAG	2 cut(s)	468, 729
Zsp2I	ATGCAT	2 cut(s)	395, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.