Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000547.1

Orthogroup ID

OG0004668

Physical Location & Seq

Genomic Coordinates Reverse (-)

148410 .. 150208

Gene Structure 1799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000547.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgctctgtttttttgcaagattagattatggggatggaactaaaccccaagatttccaaagctggcctaatggaggtgggtcttttcacaagtctgccagcattgacccaacagcttttgtggagtttggtgctgttgtgcattcgaaatccattgtgggtggacatgtttgtattggttctggagctgttattggacctggtgtttcagttgggcaatcgaccaaaataggatacaatgtttcacttagtaattgcactataggagattcgtgtatgatccacaatggcgcgtgcatcggtcaagatggatttgggtttatggtggatgagtatggcaatatgttaaagaagcttcagaaatggaaggatcttattgtatttctttcttgttcttctctccatccaaagatgctgaatgctaggatagggaactgtgtggagattggtgcaaatacatgcattgacaggggtagttggagagatacagttgtaggagatcattcgaagattgataatttagttcagattggtcataatgtagttattggggagaattgcatgctttgtggtcaagttgggattgcaggctcagtgacggtaggagactatgtgactatgggaggaagggtagcagttcgtgaccatgtctccattgtatcaaaggtacggcttgctgctactagctttgtcacaagggacattaaagaacctggagattacggtggcttcccagttgttccaattcgcgagtggcgaagacaagttgcaatccacagtcggacatcaacaaagcggaacccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

268

Amino Acids

28.69

Weight (kDa)

8.52

Isoelectric Point (pI)

26.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05210 AT4G05210 AT4G05210 AT4G21220
fragaria_vesca	FvH4_3g02730 FvH4_3g02730 FvH4_3g02730 FvH4_3g02730
malus_domestica	MD05G1340500.v1.1 MD10G1313900.v1.1
prunus_persica	Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1
pyrus_communis	pycom05g30970
rosa_chinensis	RchiOBHm_Chr5g0004131
rosa_laevigata	RLG00000031204 RLG00000031207
rosa_multiflora	Rmu_sc0000547.1_g000033 Rmu_sc0010028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071660 Rroxscaffold_1G00071900
rosa_rugosa	Rorug04G0409900 Rorug04G0410000 Rorug04G0410100
rosa_samantha	Rh5AG037600 Rh5BG036900 Rh5CG040300 Rh5DG036300
rosa_wichuraiana	Rw5G003400 Rw5G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	293, 750
AciI	CCGC	1 cut(s)	796
AclWI	GGATC	2 cut(s)	274, 378
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	669
AfiI	CCNNNNNNNGG	1 cut(s)	74
AflIII	ACRYGT	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	199, 712
AluBI	AGCT	5 cut(s)	63, 116, 188, 355, 687
AluI	AGCT	5 cut(s)	63, 116, 188, 355, 687
Alw26I	GTCTC	2 cut(s)	600, 655
AlwI	GGATC	2 cut(s)	274, 378
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	677
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	197
AsuII	TTCGAA	2 cut(s)	146, 506
AvaII	GGWCC	1 cut(s)	197
BaeI	ACNNNNGTAYC	2 cut(s)	477, 510
BbsI	GAAGAC	1 cut(s)	766
BbvI	GCAGC	1 cut(s)	664
BccI	CCATC	3 cut(s)	29, 302, 411
BceAI	ACGGC	1 cut(s)	686
BciT130I	CCWGG	2 cut(s)	201, 714
BciVI	GTATCC	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	600, 655
BfaI	CTAG	2 cut(s)	423, 684
BfmI	CTRYAG	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	678
BlsI	GCNGC	1 cut(s)	679
Bme1390I	CCNGG	2 cut(s)	201, 714
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	800
BmrFI	CCNGG	2 cut(s)	201, 714
BmrI	ACTGGG	1 cut(s)	728
BmsI	GCATC	2 cut(s)	306, 402
BmuI	ACTGGG	1 cut(s)	728
BpiI	GAAGAC	1 cut(s)	766
BpmI	CTGGAG	2 cut(s)	204, 735
Bpu14I	TTCGAA	2 cut(s)	146, 506
BsaXI	ACNNNNNCTCC	6 cut(s)	597, 615, 627, 635, 645, 665
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	734
BseBI	CCWGG	2 cut(s)	201, 714
BseGI	GGATG	3 cut(s)	40, 334, 403
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	1 cut(s)	734
BseXI	GCAGC	1 cut(s)	664
Bsh1236I	CGCG	2 cut(s)	293, 750
BshFI	GGCC	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	600, 655
BsmFI	GGGAC	1 cut(s)	713
BsmI	GAATGC	2 cut(s)	142, 424
BsnI	GGCC	1 cut(s)	67
Bsp119I	TTCGAA	2 cut(s)	146, 506
Bsp143I	GATC	3 cut(s)	279, 370, 499
Bsp68I	TCGCGA	1 cut(s)	750
BspACI	CCGC	1 cut(s)	796
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	605
BspFNI	CGCG	2 cut(s)	293, 750
BspLI	GGNNCC	1 cut(s)	800
BspPI	GGATC	2 cut(s)	274, 378
BspT104I	TTCGAA	2 cut(s)	146, 506
BsrI	ACTGG	1 cut(s)	734
BssMI	GATC	3 cut(s)	279, 370, 499
Bst2UI	CCWGG	2 cut(s)	201, 714
Bst4CI	ACNGT	5 cut(s)	437, 490, 601, 725, 779
BstBI	TTCGAA	2 cut(s)	146, 506
BstC8I	GCNNGC	6 cut(s)	65, 100, 295, 563, 589, 675
BstDEI	CTNAG	3 cut(s)	248, 592, 804
BstENI	CCTNNNNNAGG	1 cut(s)	72
BstF5I	GGATG	3 cut(s)	40, 334, 403
BstFNI	CGCG	2 cut(s)	293, 750
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	3 cut(s)	282, 373, 502
BstMAI	GTCTC	2 cut(s)	600, 655
BstMBI	GATC	3 cut(s)	279, 370, 499
BstNI	CCWGG	2 cut(s)	201, 714
BstNSI	RCATGY	3 cut(s)	170, 462, 565
BstSCI	CCNGG	2 cut(s)	199, 712
BstSFI	CTRYAG	1 cut(s)	261
BstUI	CGCG	2 cut(s)	293, 750
BstV1I	GCAGC	1 cut(s)	664
BstV2I	GAAGAC	1 cut(s)	766
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuI	GTATCC	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	67
BtsCI	GGATG	3 cut(s)	40, 334, 403
BtsIMutI	CAGTG	1 cut(s)	600
BtuMI	TCGCGA	1 cut(s)	750
Cac8I	GCNNGC	6 cut(s)	65, 100, 295, 563, 589, 675
CfoI	GCGC	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	197
CsiI	ACCWGGT	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	668
CviAII	CATG	4 cut(s)	167, 459, 562, 647
CviJI	RGCY	9 cut(s)	63, 67, 116, 188, 355, 591, 673, 687, 729
CviKI_1	RGCY	9 cut(s)	63, 67, 116, 188, 355, 591, 673, 687, 729
CviQI	GTAC	1 cut(s)	668
DdeI	CTNAG	3 cut(s)	248, 592, 804
DpnI	GATC	3 cut(s)	281, 372, 501
DpnII	GATC	3 cut(s)	279, 370, 499
Eco47I	GGWCC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	341
EcoNI	CCTNNNNNAGG	1 cut(s)	72
EcoRII	CCWGG	2 cut(s)	199, 712
EcoT22I	ATGCAT	1 cut(s)	464
FaeI	CATG	4 cut(s)	170, 462, 565, 650
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	4 cut(s)	166, 458, 561, 646
Fnu4HI	GCNGC	1 cut(s)	678
FokI	GGATG	3 cut(s)	47, 341, 390
Fsp4HI	GCNGC	1 cut(s)	678
FspBI	CTAG	2 cut(s)	423, 684
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	1 cut(s)	678
GsuI	CTGGAG	2 cut(s)	204, 735
HaeIII	GGCC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	4 cut(s)	170, 462, 565, 650
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	3 cut(s)	360, 528, 783
Hpy188III	TCNNGA	4 cut(s)	183, 305, 641, 749
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	361, 621
HpyCH4III	ACNGT	5 cut(s)	437, 490, 601, 725, 779
HpyCH4V	TGCA	9 cut(s)	17, 142, 258, 297, 452, 462, 561, 587, 770
HpyF3I	CTNAG	3 cut(s)	248, 592, 804
Hsp92II	CATG	4 cut(s)	170, 462, 565, 650
HspAI	GCGC	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	279, 370, 499
LmnI	GCTCC	1 cut(s)	185
Lsp1109I	GCAGC	1 cut(s)	664
LweI	GCATC	2 cut(s)	306, 402
MabI	ACCWGGT	1 cut(s)	199
MaeI	CTAG	2 cut(s)	423, 684
MaeIII	GTNAC	4 cut(s)	595, 613, 641, 691
MalI	GATC	3 cut(s)	281, 372, 501
MboI	GATC	3 cut(s)	279, 370, 499
MboII	GAAGA	3 cut(s)	387, 520, 771
MflI	RGATCY	1 cut(s)	370
MluCI	AATT	4 cut(s)	253, 517, 556, 744
MmeI	TCCRAC	2 cut(s)	458, 761
MnlI	CCTC	2 cut(s)	68, 617
Mph1103I	ATGCAT	1 cut(s)	464
MseI	TTAA	2 cut(s)	347, 705
MspR9I	CCNGG	2 cut(s)	201, 714
Mva1269I	GAATGC	2 cut(s)	142, 424
MvaI	CCWGG	2 cut(s)	201, 714
MvnI	CGCG	2 cut(s)	293, 750
NdeII	GATC	3 cut(s)	279, 370, 499
NlaIII	CATG	4 cut(s)	170, 462, 565, 650
NlaIV	GGNNCC	1 cut(s)	800
NmuCI	GTSAC	4 cut(s)	595, 613, 641, 691
NruI	TCGCGA	1 cut(s)	750
NsiI	ATGCAT	1 cut(s)	464
NspI	RCATGY	3 cut(s)	170, 462, 565
NspV	TTCGAA	2 cut(s)	146, 506
PaeI	GCATGC	1 cut(s)	565
PciI	ACATGT	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	754
PctI	GAATGC	2 cut(s)	142, 424
PfeI	GAWTC	1 cut(s)	269
PflFI	GACNNNGTC	1 cut(s)	647
PkrI	GCNGC	1 cut(s)	679
PscI	ACATGT	1 cut(s)	166
Psp6I	CCWGG	2 cut(s)	199, 712
PspGI	CCWGG	2 cut(s)	199, 712
PspN4I	GGNNCC	1 cut(s)	800
PspPI	GGNCC	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	370
PsyI	GACNNNGTC	1 cut(s)	647
RruI	TCGCGA	1 cut(s)	750
RsaI	GTAC	1 cut(s)	669
RsaNI	GTAC	1 cut(s)	668
SaqAI	TTAA	2 cut(s)	347, 705
SatI	GCNGC	1 cut(s)	678
Sau3AI	GATC	3 cut(s)	279, 370, 499
Sau96I	GGNCC	1 cut(s)	197
ScrFI	CCNGG	2 cut(s)	201, 714
SetI	ASST	9 cut(s)	65, 79, 118, 190, 202, 357, 669, 689, 715
SexAI	ACCWGGT	1 cut(s)	199
SfaNI	GCATC	2 cut(s)	306, 402
SfcI	CTRYAG	1 cut(s)	261
SfuI	TTCGAA	2 cut(s)	146, 506
SinI	GGWCC	1 cut(s)	197
SphI	GCATGC	1 cut(s)	565
Sse9I	AATT	4 cut(s)	253, 517, 556, 744
SsiI	CCGC	1 cut(s)	796
SspMI	CTAG	2 cut(s)	423, 684
StyD4I	CCNGG	2 cut(s)	199, 712
TaaI	ACNGT	5 cut(s)	437, 490, 601, 725, 779
TaqI	TCGA	3 cut(s)	146, 221, 506
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	4 cut(s)	253, 517, 556, 744
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	347, 705
Tru9I	TTAA	2 cut(s)	347, 705
TscAI	CASTG	1 cut(s)	600
TseFI	GTSAC	4 cut(s)	595, 613, 641, 691
TseI	GCWGC	1 cut(s)	677
Tsp45I	GTSAC	4 cut(s)	595, 613, 641, 691
TspRI	CASTG	1 cut(s)	600
Tth111I	GACNNNGTC	1 cut(s)	647
VpaK11BI	GGWCC	1 cut(s)	197
XagI	CCTNNNNNAGG	1 cut(s)	72
XceI	RCATGY	3 cut(s)	170, 462, 565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	750
XspI	CTAG	2 cut(s)	423, 684
Zsp2I	ATGCAT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.