Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004668

Physical Location & Seq

Genomic Coordinates Forward (+)

39831306 .. 39831831

Gene Structure 526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1313900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCTCTGAGACAACACCTGTTTTGTCACCAACCATTTCTGCACCTGCTCTGTATTTCAAGATCAGAGGGCGATGCTCCGACCGTTCATCCAGAATTCCAACAATGGCATAACGGAGGTGGGTCTTTCCACACGTTTGCCTGCATCGACCCAACAGTTTTCATAGAGTTTGGTGCTGTTGTTCATTCAAAATCCGTTGTTGGCGAGAGCTGTCATTGGACCTCACTATTGGGCAATCAACCAAAATTGGGTGACGATCTAATTTTTAACTCGACATTGCCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

96

Amino Acids

10.56

Weight (kDa)

5.99

Isoelectric Point (pI)

61.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05210 AT4G05210 AT4G05210 AT4G21220
fragaria_vesca	FvH4_3g02730 FvH4_3g02730 FvH4_3g02730 FvH4_3g02730
malus_domestica	MD05G1340500.v1.1 MD10G1313900.v1.1
prunus_persica	Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1
pyrus_communis	pycom05g30970
rosa_chinensis	RchiOBHm_Chr5g0004131
rosa_laevigata	RLG00000031204 RLG00000031207
rosa_multiflora	Rmu_sc0000547.1_g000033 Rmu_sc0010028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071660 Rroxscaffold_1G00071900
rosa_rugosa	Rorug04G0409900 Rorug04G0410000 Rorug04G0410100
rosa_samantha	Rh5AG037600 Rh5BG036900 Rh5CG040300 Rh5DG036300
rosa_wichuraiana	Rw5G003400 Rw5G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	54
Acc36I	ACCTGC	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	2 cut(s)	60, 189
AluBI	AGCT	1 cut(s)	210
AluI	AGCT	1 cut(s)	210
Alw26I	GTCTC	2 cut(s)	4, 9
ApoI	RAATTY	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	219
AsuHPI	GGTGA	2 cut(s)	20, 263
AvaII	GGWCC	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	4, 9
BfuAI	ACCTGC	1 cut(s)	54
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmsI	GCATC	2 cut(s)	64, 153
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	275
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	1 cut(s)	275
BsgI	GTGCAG	1 cut(s)	26
Bsh1285I	CGRYCG	1 cut(s)	84
BsiEI	CGRYCG	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	4, 9
Bsp143I	GATC	2 cut(s)	62, 256
BspMI	ACCTGC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	275
BssMI	GATC	2 cut(s)	62, 256
Bst4CI	ACNGT	2 cut(s)	85, 157
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	2 cut(s)	65, 259
BstMAI	GTCTC	2 cut(s)	4, 9
BstMBI	GATC	2 cut(s)	62, 256
BstMCI	CGRYCG	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	88
BveI	ACCTGC	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	219
CviJI	RGCY	1 cut(s)	210
CviKI_1	RGCY	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	2 cut(s)	64, 258
DpnII	GATC	2 cut(s)	62, 256
Eco47I	GGWCC	1 cut(s)	219
EcoRI	GAATTC	1 cut(s)	95
FaiI	YATR	2 cut(s)	111, 164
FokI	GGATG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	20, 263
Hpy188I	TCNGA	3 cut(s)	9, 67, 81
Hpy188III	TCNNGA	2 cut(s)	60, 92
HpyCH4III	ACNGT	2 cut(s)	85, 157
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	2 cut(s)	43, 144
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	62, 256
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	4 cut(s)	32, 59, 105, 154
LweI	GCATC	2 cut(s)	64, 153
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	2 cut(s)	26, 251
MalI	GATC	2 cut(s)	64, 258
MboI	GATC	2 cut(s)	62, 256
MluCI	AATT	3 cut(s)	95, 245, 261
MmeI	TCCRAC	2 cut(s)	104, 124
MnlI	CCTC	3 cut(s)	61, 110, 232
MseI	TTAA	2 cut(s)	267, 286
NdeII	GATC	2 cut(s)	62, 256
NmuCI	GTSAC	2 cut(s)	26, 251
PaqCI	CACCTGC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	267, 286
Sau3AI	GATC	2 cut(s)	62, 256
Sau96I	GGNCC	1 cut(s)	219
SetI	ASST	6 cut(s)	21, 48, 121, 137, 212, 224
SfaNI	GCATC	2 cut(s)	64, 153
SgeI	CNNG	8 cut(s)	31, 58, 72, 104, 145, 153, 217, 283
SinI	GGWCC	1 cut(s)	219
Sse9I	AATT	3 cut(s)	95, 245, 261
TaaI	ACNGT	2 cut(s)	85, 157
TaiI	ACGT	1 cut(s)	137
TaqI	TCGA	2 cut(s)	147, 272
TasI	AATT	3 cut(s)	95, 245, 261
Tru1I	TTAA	2 cut(s)	267, 286
Tru9I	TTAA	2 cut(s)	267, 286
TseFI	GTSAC	2 cut(s)	26, 251
Tsp45I	GTSAC	2 cut(s)	26, 251
TspDTI	ATGAA	3 cut(s)	77, 151, 173
TspGWI	ACGGA	2 cut(s)	129, 184
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.