Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004668

Physical Location & Seq

Genomic Coordinates Reverse (-)

2539712 .. 2541704

Gene Structure 1993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG036300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCACTCCAGCTTAGAAGACTACTTGCGGCTGCATTGGGATACTCGCCACAACAAGTTCGCGCCTTGTCTCAATTGAGCTTTGGAGCCTGTTACAGTTCCATTGCTTCTTCCGACTCCTCTGATTATGGGGATGGAACTAAACCCCAAGATTTCCAAAGCTGGCCTAATGGAGGTGGGTCTTTTCACAAGTCTGCCAGCATTGACCCTACAGCTTTTGTGGAGTTTGGTGCTGTTGTGCATTCGAAGTCCGTTGTGGGTGAGCATGTTTGTATTGGTTCCGGAGCTGTTATTGGACCTGGTGTTTCAGTTGGGCAATCGACCAAAATAGGCTACAATGTTTCACTTAGTAATTGCACTATAGGAGATTCGTGTATGATCCACAATGGCGCGTGCATCGGTCAAGATGGATTTGGGTTTATGGTGGATGAGCATGGCAATATGTTAAAGAAGCCTCAGATGCTGAATGCTAGGATAGGGAACTGTGTGGAGATTGGTGCAAATACATGCATTGACAGGGGTAGTTGGAGAGATACAGTTGTAGGAGATCATTCGAAGATTGATAATTTAGTTCAGATTGGTCATAATGTAGTTATTGGGGAGAATTGCATGCTTTGTGGTCAAGTTGGGATTGCAGGCTCAGTGACGGTAGGAGACTATGTGACTATGGGAGGAAGGGTAGCAATTCGTGACCATGTCTCCATTGTATCAAAGGTACGGCTTGCTGCTACTAGCTTTGTCACAAGGGACATTAAAGAACCTGGAGATTACGGTGGCTTCCCAGTTGTTCCAATTCGCGAGTGGCGAAGACAAGTTGCAATCCACAGTCGGACATCAACAAAGCGGAACCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

284

Amino Acids

30.06

Weight (kDa)

8.08

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMPPB_C	PF25087	83 - 133	5e-07	GMPPB C-terminal domain
Hexapep	PF00132	178 - 213	6.9e-08	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05210 AT4G05210 AT4G05210 AT4G21220
fragaria_vesca	FvH4_3g02730 FvH4_3g02730 FvH4_3g02730 FvH4_3g02730
malus_domestica	MD05G1340500.v1.1 MD10G1313900.v1.1
prunus_persica	Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1
pyrus_communis	pycom05g30970
rosa_chinensis	RchiOBHm_Chr5g0004131
rosa_laevigata	RLG00000031204 RLG00000031207
rosa_multiflora	Rmu_sc0000547.1_g000033 Rmu_sc0010028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071660 Rroxscaffold_1G00071900
rosa_rugosa	Rorug04G0409900 Rorug04G0410000 Rorug04G0410100
rosa_samantha	Rh5AG037600 Rh5BG036900 Rh5CG040300 Rh5DG036300
rosa_wichuraiana	Rw5G003400 Rw5G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	63, 392, 798
AccIII	TCCGGA	1 cut(s)	281
AciI	CCGC	2 cut(s)	29, 844
AclWI	GGATC	1 cut(s)	373
AfaI	GTAC	1 cut(s)	717
AfiI	CCNNNNNNNGG	1 cut(s)	173
AjnI	CCWGG	2 cut(s)	298, 760
AluBI	AGCT	6 cut(s)	13, 81, 162, 215, 287, 735
AluI	AGCT	6 cut(s)	13, 81, 162, 215, 287, 735
Alw26I	GTCTC	3 cut(s)	75, 648, 703
AlwI	GGATC	1 cut(s)	373
AlwNI	CAGNNNCTG	1 cut(s)	463
Aor13HI	TCCGGA	1 cut(s)	281
AoxI	GGCC	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	32, 725
AspLEI	GCGC	2 cut(s)	65, 392
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	272
AsuII	TTCGAA	2 cut(s)	245, 554
AvaII	GGWCC	1 cut(s)	296
BaeI	ACNNNNGTAYC	2 cut(s)	525, 558
BbsI	GAAGAC	2 cut(s)	25, 814
BbvI	GCAGC	2 cut(s)	19, 712
BccI	CCATC	2 cut(s)	128, 401
BceAI	ACGGC	1 cut(s)	734
BciT130I	CCWGG	2 cut(s)	300, 762
BciVI	GTATCC	1 cut(s)	35
BcoDI	GTCTC	3 cut(s)	75, 648, 703
BfaI	CTAG	2 cut(s)	471, 732
BfmI	CTRYAG	2 cut(s)	210, 360
BfuI	GTATCC	1 cut(s)	35
BisI	GCNGC	3 cut(s)	30, 33, 726
BlsI	GCNGC	3 cut(s)	31, 34, 727
Bme1390I	CCNGG	2 cut(s)	300, 762
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	3 cut(s)	88, 280, 848
BmrFI	CCNGG	2 cut(s)	300, 762
BmrI	ACTGGG	1 cut(s)	776
BmsI	GCATC	2 cut(s)	405, 450
BmuI	ACTGGG	1 cut(s)	776
BpiI	GAAGAC	2 cut(s)	25, 814
BpmI	CTGGAG	1 cut(s)	783
Bpu14I	TTCGAA	2 cut(s)	245, 554
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	6 cut(s)	645, 663, 675, 683, 693, 713
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	782
Bse3DI	GCAATG	1 cut(s)	102
BseAI	TCCGGA	1 cut(s)	281
BseBI	CCWGG	2 cut(s)	300, 762
BseGI	GGATG	2 cut(s)	139, 433
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	470, 654
BseNI	ACTGG	1 cut(s)	782
BseRI	GAGGAG	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	19, 712
Bsh1236I	CGCG	3 cut(s)	63, 392, 798
BshFI	GGCC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	761
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	3 cut(s)	75, 648, 703
BsmFI	GGGAC	1 cut(s)	761
BsmI	GAATGC	2 cut(s)	241, 472
BsnI	GGCC	1 cut(s)	166
Bsp119I	TTCGAA	2 cut(s)	245, 554
Bsp13I	TCCGGA	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	378, 547
Bsp68I	TCGCGA	1 cut(s)	798
BspACI	CCGC	2 cut(s)	29, 844
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	2 cut(s)	469, 653
BspEI	TCCGGA	1 cut(s)	281
BspFNI	CGCG	3 cut(s)	63, 392, 798
BspLI	GGNNCC	3 cut(s)	88, 280, 848
BspPI	GGATC	1 cut(s)	373
BspT104I	TTCGAA	2 cut(s)	245, 554
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	782
BssMI	GATC	2 cut(s)	378, 547
Bst2UI	CCWGG	2 cut(s)	300, 762
Bst4CI	ACNGT	6 cut(s)	98, 485, 538, 649, 773, 827
BstBI	TTCGAA	2 cut(s)	245, 554
BstC8I	GCNNGC	6 cut(s)	164, 199, 394, 611, 637, 723
BstDEI	CTNAG	5 cut(s)	14, 347, 456, 640, 852
BstENI	CCTNNNNNAGG	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	139, 433
BstFNI	CGCG	3 cut(s)	63, 392, 798
BstHHI	GCGC	2 cut(s)	65, 392
BstKTI	GATC	2 cut(s)	381, 550
BstMAI	GTCTC	3 cut(s)	75, 648, 703
BstMBI	GATC	2 cut(s)	378, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	460
BstNI	CCWGG	2 cut(s)	300, 762
BstNSI	RCATGY	3 cut(s)	269, 510, 613
BstSCI	CCNGG	2 cut(s)	298, 760
BstSFI	CTRYAG	2 cut(s)	210, 360
BstUI	CGCG	3 cut(s)	63, 392, 798
BstV1I	GCAGC	2 cut(s)	19, 712
BstV2I	GAAGAC	2 cut(s)	25, 814
BsuI	GTATCC	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	139, 433
BtsIMutI	CAGTG	1 cut(s)	648
BtuMI	TCGCGA	1 cut(s)	798
Cac8I	GCNNGC	6 cut(s)	164, 199, 394, 611, 637, 723
CaiI	CAGNNNCTG	1 cut(s)	463
CfoI	GCGC	2 cut(s)	65, 392
Cfr13I	GGNCC	1 cut(s)	296
CsiI	ACCWGGT	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	716
CviAII	CATG	5 cut(s)	266, 434, 507, 610, 695
CviQI	GTAC	1 cut(s)	716
DdeI	CTNAG	5 cut(s)	14, 347, 456, 640, 852
DpnI	GATC	2 cut(s)	380, 549
DpnII	GATC	2 cut(s)	378, 547
Eco47I	GGWCC	1 cut(s)	296
EcoNI	CCTNNNNNAGG	1 cut(s)	171
EcoRII	CCWGG	2 cut(s)	298, 760
EcoT22I	ATGCAT	1 cut(s)	512
FaeI	CATG	5 cut(s)	269, 437, 510, 613, 698
FaqI	GGGAC	1 cut(s)	761
FatI	CATG	5 cut(s)	265, 433, 506, 609, 694
Fnu4HI	GCNGC	3 cut(s)	30, 33, 726
FokI	GGATG	2 cut(s)	146, 440
Fsp4HI	GCNGC	3 cut(s)	30, 33, 726
FspBI	CTAG	2 cut(s)	471, 732
GlaI	GCGC	2 cut(s)	64, 391
GluI	GCNGC	3 cut(s)	30, 33, 726
GsuI	CTGGAG	1 cut(s)	783
HaeIII	GGCC	1 cut(s)	166
HapII	CCGG	1 cut(s)	282
HhaI	GCGC	2 cut(s)	65, 392
Hin1II	CATG	5 cut(s)	269, 437, 510, 613, 698
Hin6I	GCGC	2 cut(s)	63, 390
HinP1I	GCGC	2 cut(s)	63, 390
HinfI	GANTC	2 cut(s)	116, 368
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	5 cut(s)	115, 124, 459, 576, 831
Hpy188III	TCNNGA	4 cut(s)	282, 404, 689, 797
HpyAV	CCTTC	1 cut(s)	669
HpyCH4III	ACNGT	6 cut(s)	98, 485, 538, 649, 773, 827
HpyCH4V	TGCA	9 cut(s)	35, 241, 357, 396, 500, 510, 609, 635, 818
HpyF10VI	GCNNNNNNNGC	1 cut(s)	460
HpyF3I	CTNAG	5 cut(s)	14, 347, 456, 640, 852
Hsp92II	CATG	5 cut(s)	269, 437, 510, 613, 698
HspAI	GCGC	2 cut(s)	63, 390
Kpn2I	TCCGGA	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	378, 547
LmnI	GCTCC	2 cut(s)	86, 284
Lsp1109I	GCAGC	2 cut(s)	19, 712
LweI	GCATC	2 cut(s)	405, 450
MabI	ACCWGGT	1 cut(s)	298
MaeI	CTAG	2 cut(s)	471, 732
MaeIII	GTNAC	5 cut(s)	92, 643, 661, 689, 739
MalI	GATC	2 cut(s)	380, 549
MboI	GATC	2 cut(s)	378, 547
MboII	GAAGA	4 cut(s)	30, 102, 568, 819
MfeI	CAATTG	1 cut(s)	74
MluCI	AATT	6 cut(s)	74, 352, 565, 604, 684, 792
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	3 cut(s)	138, 506, 809
MnlI	CCTC	4 cut(s)	130, 167, 465, 665
Mph1103I	ATGCAT	1 cut(s)	512
MroI	TCCGGA	1 cut(s)	281
MseI	TTAA	2 cut(s)	446, 753
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	2 cut(s)	300, 762
MunI	CAATTG	1 cut(s)	74
Mva1269I	GAATGC	2 cut(s)	241, 472
MvaI	CCWGG	2 cut(s)	300, 762
MvnI	CGCG	3 cut(s)	63, 392, 798
MwoI	GCNNNNNNNGC	1 cut(s)	460
NdeII	GATC	2 cut(s)	378, 547
NlaIII	CATG	5 cut(s)	269, 437, 510, 613, 698
NlaIV	GGNNCC	3 cut(s)	88, 280, 848
NmuCI	GTSAC	4 cut(s)	643, 661, 689, 739
NruI	TCGCGA	1 cut(s)	798
NsiI	ATGCAT	1 cut(s)	512
NspI	RCATGY	3 cut(s)	269, 510, 613
NspV	TTCGAA	2 cut(s)	245, 554
PaeI	GCATGC	1 cut(s)	613
PcsI	WCGNNNNNNNCGW	1 cut(s)	802
PctI	GAATGC	2 cut(s)	241, 472
PfeI	GAWTC	1 cut(s)	368
PflFI	GACNNNGTC	1 cut(s)	695
PkrI	GCNGC	3 cut(s)	31, 34, 727
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	298, 760
PspGI	CCWGG	2 cut(s)	298, 760
PspN4I	GGNNCC	3 cut(s)	88, 280, 848
PspPI	GGNCC	1 cut(s)	296
PstNI	CAGNNNCTG	1 cut(s)	463
PsyI	GACNNNGTC	1 cut(s)	695
RruI	TCGCGA	1 cut(s)	798
RsaI	GTAC	1 cut(s)	717
RsaNI	GTAC	1 cut(s)	716
SaqAI	TTAA	2 cut(s)	446, 753
SatI	GCNGC	3 cut(s)	30, 33, 726
Sau3AI	GATC	2 cut(s)	378, 547
Sau96I	GGNCC	1 cut(s)	296
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	300, 762
SexAI	ACCWGGT	1 cut(s)	298
SfaNI	GCATC	2 cut(s)	405, 450
SfcI	CTRYAG	2 cut(s)	210, 360
SfuI	TTCGAA	2 cut(s)	245, 554
SinI	GGWCC	1 cut(s)	296
SphI	GCATGC	1 cut(s)	613
Sse9I	AATT	6 cut(s)	74, 352, 565, 604, 684, 792
SsiI	CCGC	2 cut(s)	29, 844
SspMI	CTAG	2 cut(s)	471, 732
StyD4I	CCNGG	2 cut(s)	298, 760
TaaI	ACNGT	6 cut(s)	98, 485, 538, 649, 773, 827
TaqI	TCGA	3 cut(s)	245, 320, 554
TaqII	GACCGA	1 cut(s)	389
TasI	AATT	6 cut(s)	74, 352, 565, 604, 684, 792
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	446, 753
Tru9I	TTAA	2 cut(s)	446, 753
TscAI	CASTG	1 cut(s)	648
TseFI	GTSAC	4 cut(s)	643, 661, 689, 739
TseI	GCWGC	2 cut(s)	32, 725
Tsp45I	GTSAC	4 cut(s)	643, 661, 689, 739
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	1 cut(s)	648
Tth111I	GACNNNGTC	1 cut(s)	695
VpaK11BI	GGWCC	1 cut(s)	296
XagI	CCTNNNNNAGG	1 cut(s)	171
XceI	RCATGY	3 cut(s)	269, 510, 613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	798
XspI	CTAG	2 cut(s)	471, 732
Zsp2I	ATGCAT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.