Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010028.1

Orthogroup ID

OG0004668

Physical Location & Seq

Genomic Coordinates Forward (+)

4159 .. 4979

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010028.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggcactccagcttagaagacttgcggctgcattgggatacacgccacaacaagttcgcgccttgtctcaattgggctttggagcctgttacagttccattgcttcctctgactcctctgattatggggatggaactaaaccccaagatttccaaagctggcctaatggtggtgggtcttttcacaagtctgccagcattgacccaacagcttttgtggagtttggtgctgttgttcattcgaagtccgttgtgggtgagcatgtttgtattggttccggagctgttattggacctggtgtttcagttgggcaatcgaccaaaataggctacaatgtttcacttagaaattgcactataggagattcgtgtataatccacaatggcgcatgcatcggtcaagatggatttgggtttatggtggatgagcatggcaatatgttaaagaagcctcaggttagtgatgtttctttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

158

Amino Acids

16.39

Weight (kDa)

6.16

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05210 AT4G05210 AT4G05210 AT4G21220
fragaria_vesca	FvH4_3g02730 FvH4_3g02730 FvH4_3g02730 FvH4_3g02730
malus_domestica	MD05G1340500.v1.1 MD10G1313900.v1.1
prunus_persica	Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1
pyrus_communis	pycom05g30970
rosa_chinensis	RchiOBHm_Chr5g0004131
rosa_laevigata	RLG00000031204 RLG00000031207
rosa_multiflora	Rmu_sc0000547.1_g000033 Rmu_sc0010028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071660 Rroxscaffold_1G00071900
rosa_rugosa	Rorug04G0409900 Rorug04G0410000 Rorug04G0410100
rosa_samantha	Rh5AG037600 Rh5BG036900 Rh5CG040300 Rh5DG036300
rosa_wichuraiana	Rw5G003400 Rw5G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	278
AciI	CCGC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	170
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	4 cut(s)	13, 159, 212, 284
AluI	AGCT	4 cut(s)	13, 159, 212, 284
Alw26I	GTCTC	1 cut(s)	72
Aor13HI	TCCGGA	1 cut(s)	278
AoxI	GGCC	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	29
AspLEI	GCGC	2 cut(s)	62, 389
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	269
AsuII	TTCGAA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	293
AxyI	CCTNAGG	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	125, 398
BciT130I	CCWGG	1 cut(s)	297
BciVI	GTATCC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	32
BisI	GCNGC	2 cut(s)	27, 30
BlsI	GCNGC	2 cut(s)	28, 31
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	2 cut(s)	85, 277
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	25
Bpu14I	TTCGAA	1 cut(s)	242
BsaWI	WCCGGW	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse21I	CCTNAGG	1 cut(s)	453
Bse3DI	GCAATG	1 cut(s)	99
BseAI	TCCGGA	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	297
BseGI	GGATG	2 cut(s)	136, 430
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	467
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	163
Bsp119I	TTCGAA	1 cut(s)	242
Bsp13I	TCCGGA	1 cut(s)	278
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	1 cut(s)	466
BspEI	TCCGGA	1 cut(s)	278
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	85, 277
BspT104I	TTCGAA	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	95
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	3 cut(s)	161, 196, 391
BstDEI	CTNAG	3 cut(s)	14, 344, 453
BstF5I	GGATG	2 cut(s)	136, 430
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	62, 389
BstMAI	GTCTC	1 cut(s)	72
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	2 cut(s)	266, 393
BstSCI	CCNGG	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	1 cut(s)	25
Bsu36I	CCTNAGG	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	163
BtsCI	GGATG	2 cut(s)	136, 430
Cac8I	GCNNGC	3 cut(s)	161, 196, 391
CfoI	GCGC	2 cut(s)	62, 389
Cfr13I	GGNCC	1 cut(s)	293
CsiI	ACCWGGT	1 cut(s)	295
CviAII	CATG	3 cut(s)	263, 390, 431
DdeI	CTNAG	3 cut(s)	14, 344, 453
Eco47I	GGWCC	1 cut(s)	293
Eco81I	CCTNAGG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	295
EcoT22I	ATGCAT	1 cut(s)	395
FaeI	CATG	3 cut(s)	266, 393, 434
FaiI	YATR	8 cut(s)	126, 264, 359, 374, 391, 419, 432, 440
FatI	CATG	3 cut(s)	262, 389, 430
Fnu4HI	GCNGC	2 cut(s)	27, 30
FokI	GGATG	2 cut(s)	143, 437
Fsp4HI	GCNGC	2 cut(s)	27, 30
GlaI	GCGC	2 cut(s)	61, 388
GluI	GCNGC	2 cut(s)	27, 30
HaeIII	GGCC	1 cut(s)	163
HapII	CCGG	1 cut(s)	279
HhaI	GCGC	2 cut(s)	62, 389
Hin1II	CATG	3 cut(s)	266, 393, 434
Hin6I	GCGC	2 cut(s)	60, 387
HinP1I	GCGC	2 cut(s)	60, 387
HinfI	GANTC	2 cut(s)	113, 365
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	2 cut(s)	112, 121
Hpy188III	TCNNGA	2 cut(s)	279, 401
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	3 cut(s)	32, 354, 393
HpyF3I	CTNAG	3 cut(s)	14, 344, 453
Hsp92II	CATG	3 cut(s)	266, 393, 434
HspAI	GCGC	2 cut(s)	60, 387
Kpn2I	TCCGGA	1 cut(s)	278
LmnI	GCTCC	2 cut(s)	83, 281
LpnPI	CCDG	8 cut(s)	23, 100, 145, 208, 282, 292, 309, 440
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	402
MabI	ACCWGGT	1 cut(s)	295
MaeIII	GTNAC	1 cut(s)	89
MboII	GAAGA	1 cut(s)	30
MfeI	CAATTG	1 cut(s)	71
MluCI	AATT	2 cut(s)	71, 349
MlyI	GAGTC	1 cut(s)	107
MnlI	CCTC	3 cut(s)	118, 127, 462
Mph1103I	ATGCAT	1 cut(s)	395
MroI	TCCGGA	1 cut(s)	278
MseI	TTAA	1 cut(s)	443
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	297
MunI	CAATTG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	60
NlaIII	CATG	3 cut(s)	266, 393, 434
NlaIV	GGNNCC	2 cut(s)	85, 277
NsiI	ATGCAT	1 cut(s)	395
NspI	RCATGY	2 cut(s)	266, 393
NspV	TTCGAA	1 cut(s)	242
PaeI	GCATGC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	2 cut(s)	28, 31
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	85, 277
PspPI	GGNCC	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	2 cut(s)	27, 30
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	297
SetI	ASST	6 cut(s)	15, 161, 214, 286, 298, 459
SexAI	ACCWGGT	1 cut(s)	295
SfaNI	GCATC	1 cut(s)	402
SfcI	CTRYAG	1 cut(s)	357
SfuI	TTCGAA	1 cut(s)	242
SinI	GGWCC	1 cut(s)	293
SphI	GCATGC	1 cut(s)	393
Sse9I	AATT	2 cut(s)	71, 349
SsiI	CCGC	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	242, 317
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	2 cut(s)	71, 349
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	293
XceI	RCATGY	2 cut(s)	266, 393
Zsp2I	ATGCAT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.