Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004668

Physical Location & Seq

Genomic Coordinates Forward (+)

46105412 .. 46107908

Gene Structure 2497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1340500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCAAGCGCTCTCAGAAGACTTGCAGCTGCATTCTACTGCTGGCCACATCTCCAATTCTTTCGAAGCTTGTCTCCGTTGCGCTTTGGAAATGGTTACCGTTCCTTCGTGTCTTCGGTTTCCTCTGAGGACGGTGCTCCAACTGGTCATCCAGATTTCGGACAATGGAAGAACGGAGGCGGGTTTTTCCACAAGTCTGCCTGCATTGACCCAACAGTTTTCATAGAGTTTGGTGCTGTTGTTCATTCAAAATCCGTTGTCGGCGAACATGTTTGTATTGGTTCTGGAGCTGTTATTGGACCTTCGGTTACAGTTGGGCAATCAACAAAAATTGGCTACAATGTTGCACTTAGTAATTGCAGCATAGGAGATTCGTGCATAATCCACAATGGTGTATGCATCGGTCAAGATGGATTCGGATTTATGGTGGATGAGCATGGGAATATGTTAAAGAAGCCTCAAATGCTGAATGCTAGGATTGGAAACCACGTGGAGATTGGTGCAAATACGTGCGTTGACAGGGGCAGTTGGAGAGATACCGTTGTAGGGGATCATTCAAAGATAGACAATTTAGTTCAGATTGGCCATAATGTAGTTATTGGGAAGAATTGCATACTTTGTGGACTAGTTGGGATTGCAGGCTCAGTGACGATAGGAGACTATGTAACTATGGGAGGGAGGGTAGCAGTTCGTGACCATGTATCCATTGTATCAAAGGTACGGCTTGCTGGTATGAGCTGTGTCACGAAAGATATTACAGAACCTGGAGATTATGGTGGCTTCCCTGCTGTTCCAGCCCATCAATGGCGAAGACAAGTTACAAACTACAGTCGGACATCAAAACAGCGGAACCCTGGGAATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

289

Amino Acids

30.77

Weight (kDa)

8.82

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMPPB_C	PF25087	84 - 134	4.9e-06	GMPPB C-terminal domain
Hexapep	PF00132	179 - 214	7.1e-07	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05210 AT4G05210 AT4G05210 AT4G21220
fragaria_vesca	FvH4_3g02730 FvH4_3g02730 FvH4_3g02730 FvH4_3g02730
malus_domestica	MD05G1340500.v1.1 MD10G1313900.v1.1
prunus_persica	Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1 Prupe.4G027100_v2.0.a1
pyrus_communis	pycom05g30970
rosa_chinensis	RchiOBHm_Chr5g0004131
rosa_laevigata	RLG00000031204 RLG00000031207
rosa_multiflora	Rmu_sc0000547.1_g000033 Rmu_sc0010028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071660 Rroxscaffold_1G00071900
rosa_rugosa	Rorug04G0409900 Rorug04G0410000 Rorug04G0410100
rosa_samantha	Rh5AG037600 Rh5BG036900 Rh5CG040300 Rh5DG036300
rosa_wichuraiana	Rw5G003400 Rw5G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	180, 847
AclWI	GGATC	1 cut(s)	558
AcoI	YGGCCR	2 cut(s)	44, 583
AcvI	CACGTG	1 cut(s)	490
AfaI	GTAC	1 cut(s)	720
AfeI	AGCGCT	1 cut(s)	10
AfiI	CCNNNNNNNGG	3 cut(s)	158, 546, 804
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	249, 558
AhlI	ACTAGT	1 cut(s)	625
AjnI	CCWGG	2 cut(s)	763, 853
AleI	CACNNNNGTG	1 cut(s)	390
AluBI	AGCT	4 cut(s)	29, 69, 290, 738
AluI	AGCT	4 cut(s)	29, 69, 290, 738
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	2 cut(s)	78, 651
AlwI	GGATC	1 cut(s)	558
AlwNI	CAGNNNCTG	1 cut(s)	764
Aor51HI	AGCGCT	1 cut(s)	10
AoxI	GGCC	2 cut(s)	44, 583
ApeKI	GCWGC	3 cut(s)	26, 29, 360
AspLEI	GCGC	2 cut(s)	11, 84
AspS9I	GGNCC	1 cut(s)	299
AsuII	TTCGAA	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	299
BaeI	ACNNNNGTAYC	2 cut(s)	528, 561
BalI	TGGCCA	2 cut(s)	46, 585
BarI	GAAGNNNNNNTAC	2 cut(s)	802, 834
BbrPI	CACGTG	1 cut(s)	490
BbsI	GAAGAC	3 cut(s)	25, 105, 817
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	3 cut(s)	16, 38, 372
BccI	CCATC	2 cut(s)	404, 807
BceAI	ACGGC	1 cut(s)	737
BciT130I	CCWGG	2 cut(s)	765, 855
BciVI	GTATCC	1 cut(s)	712
BcoDI	GTCTC	2 cut(s)	78, 651
BcuI	ACTAGT	1 cut(s)	625
BfaI	CTAG	2 cut(s)	474, 626
BfmI	CTRYAG	1 cut(s)	826
BfoI	RGCGCY	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	712
BisI	GCNGC	3 cut(s)	27, 30, 361
BlsI	GCNGC	3 cut(s)	28, 31, 362
Bme1390I	CCNGG	2 cut(s)	765, 855
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	851
BmrFI	CCNGG	2 cut(s)	765, 855
BmsI	GCATC	1 cut(s)	408
BpiI	GAAGAC	3 cut(s)	25, 105, 817
BpmI	CTGGAG	2 cut(s)	306, 786
Bpu14I	TTCGAA	1 cut(s)	64
BsaAI	YACGTR	2 cut(s)	490, 510
BsaJI	CCNNGG	2 cut(s)	853, 854
BsaXI	ACNNNNNCTCC	4 cut(s)	648, 666, 678, 696
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 546, 804
Bse1I	ACTGG	1 cut(s)	148
BseBI	CCWGG	2 cut(s)	765, 855
BseDI	CCNNGG	2 cut(s)	853, 854
BseGI	GGATG	2 cut(s)	148, 436
BseLI	CCNNNNNNNGG	3 cut(s)	158, 546, 804
BseMII	CTCAG	3 cut(s)	28, 117, 657
BseNI	ACTGG	1 cut(s)	148
BseXI	GCAGC	3 cut(s)	16, 38, 372
BshFI	GGCC	2 cut(s)	46, 585
BsiHKAI	GWGCWC	1 cut(s)	139
BslI	CCNNNNNNNGG	3 cut(s)	158, 546, 804
BsmAI	GTCTC	2 cut(s)	78, 651
BsmI	GAATGC	2 cut(s)	32, 475
BsnI	GGCC	2 cut(s)	46, 585
Bsp119I	TTCGAA	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	550
BspACI	CCGC	2 cut(s)	180, 847
BspANI	GGCC	2 cut(s)	46, 585
BspCNI	CTCAG	3 cut(s)	27, 118, 656
BspLI	GGNNCC	1 cut(s)	851
BspPI	GGATC	1 cut(s)	558
BspT104I	TTCGAA	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	853, 854
BssMI	GATC	1 cut(s)	550
Bst2UI	CCWGG	2 cut(s)	765, 855
Bst4CI	ACNGT	6 cut(s)	101, 134, 217, 313, 541, 830
BstBAI	YACGTR	2 cut(s)	490, 510
BstBI	TTCGAA	1 cut(s)	64
BstC8I	GCNNGC	5 cut(s)	7, 44, 202, 640, 726
BstDEI	CTNAG	4 cut(s)	14, 126, 350, 643
BstEII	GGTNACC	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	148, 436
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 84
BstKTI	GATC	1 cut(s)	553
BstMAI	GTCTC	2 cut(s)	78, 651
BstMBI	GATC	1 cut(s)	550
BstMWI	GCNNNNNNNGC	2 cut(s)	463, 794
BstNI	CCWGG	2 cut(s)	765, 855
BstNSI	RCATGY	1 cut(s)	272
BstPI	GGTNACC	1 cut(s)	95
BstSCI	CCNGG	2 cut(s)	763, 853
BstSFI	CTRYAG	1 cut(s)	826
BstV1I	GCAGC	3 cut(s)	16, 38, 372
BstV2I	GAAGAC	3 cut(s)	25, 105, 817
BsuI	GTATCC	1 cut(s)	712
BsuRI	GGCC	2 cut(s)	46, 585
BtsCI	GGATG	2 cut(s)	148, 436
BtsIMutI	CAGTG	1 cut(s)	651
Cac8I	GCNNGC	5 cut(s)	7, 44, 202, 640, 726
CaiI	CAGNNNCTG	1 cut(s)	764
CfoI	GCGC	2 cut(s)	11, 84
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	719
CviAII	CATG	3 cut(s)	269, 437, 698
CviQI	GTAC	1 cut(s)	719
DdeI	CTNAG	4 cut(s)	14, 126, 350, 643
DpnI	GATC	1 cut(s)	552
DpnII	GATC	1 cut(s)	550
EaeI	YGGCCR	2 cut(s)	44, 583
Eco47I	GGWCC	1 cut(s)	299
Eco47III	AGCGCT	1 cut(s)	10
Eco72I	CACGTG	1 cut(s)	490
Eco91I	GGTNACC	1 cut(s)	95
EcoO65I	GGTNACC	1 cut(s)	95
EcoRII	CCWGG	2 cut(s)	763, 853
EcoT22I	ATGCAT	1 cut(s)	401
FaeI	CATG	3 cut(s)	272, 440, 701
FatI	CATG	3 cut(s)	268, 436, 697
FauI	CCCGC	1 cut(s)	173
Fnu4HI	GCNGC	3 cut(s)	27, 30, 361
FokI	GGATG	2 cut(s)	135, 443
Fsp4HI	GCNGC	3 cut(s)	27, 30, 361
FspBI	CTAG	2 cut(s)	474, 626
GlaI	GCGC	2 cut(s)	10, 83
GluI	GCNGC	3 cut(s)	27, 30, 361
GsuI	CTGGAG	2 cut(s)	306, 786
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	46, 585
HhaI	GCGC	2 cut(s)	11, 84
Hin1II	CATG	3 cut(s)	272, 440, 701
Hin6I	GCGC	2 cut(s)	9, 82
HinP1I	GCGC	2 cut(s)	9, 82
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	67
HinfI	GANTC	3 cut(s)	371, 414, 859
Hpy166II	GTNNAC	2 cut(s)	517, 623
Hpy188I	TCNGA	6 cut(s)	17, 127, 161, 419, 579, 834
Hpy188III	TCNNGA	5 cut(s)	152, 285, 407, 692, 745
Hpy8I	GTNNAC	2 cut(s)	517, 623
HpyAV	CCTTC	2 cut(s)	115, 312
HpyCH4III	ACNGT	6 cut(s)	101, 134, 217, 313, 541, 830
HpyCH4IV	ACGT	2 cut(s)	489, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	463, 794
HpyF3I	CTNAG	4 cut(s)	14, 126, 350, 643
HpySE526I	ACGT	2 cut(s)	489, 509
Hsp92II	CATG	3 cut(s)	272, 440, 701
HspAI	GCGC	2 cut(s)	9, 82
Kzo9I	GATC	1 cut(s)	550
LmnI	GCTCC	2 cut(s)	142, 287
Lsp1109I	GCAGC	3 cut(s)	16, 38, 372
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	2 cut(s)	474, 626
MaeII	ACGT	2 cut(s)	489, 509
MaeIII	GTNAC	7 cut(s)	95, 307, 646, 664, 692, 742, 817
MalI	GATC	1 cut(s)	552
MboI	GATC	1 cut(s)	550
MboII	GAAGA	5 cut(s)	30, 105, 181, 616, 822
MhlI	GDGCHC	1 cut(s)	139
MlsI	TGGCCA	2 cut(s)	46, 585
MluCI	AATT	5 cut(s)	56, 330, 355, 568, 607
MluNI	TGGCCA	2 cut(s)	46, 585
MmeI	TCCRAC	3 cut(s)	164, 509, 812
MnlI	CCTC	6 cut(s)	121, 133, 170, 468, 668, 672
Mox20I	TGGCCA	2 cut(s)	46, 585
Mph1103I	ATGCAT	1 cut(s)	401
MscI	TGGCCA	2 cut(s)	46, 585
MseI	TTAA	1 cut(s)	449
MslI	CAYNNNNRTG	1 cut(s)	390
Msp20I	TGGCCA	2 cut(s)	46, 585
MspA1I	CMGCKG	2 cut(s)	29, 847
MspR9I	CCNGG	2 cut(s)	765, 855
Mva1269I	GAATGC	2 cut(s)	32, 475
MvaI	CCWGG	2 cut(s)	765, 855
MwoI	GCNNNNNNNGC	2 cut(s)	463, 794
NdeII	GATC	1 cut(s)	550
NlaIII	CATG	3 cut(s)	272, 440, 701
NlaIV	GGNNCC	1 cut(s)	851
NmuCI	GTSAC	3 cut(s)	646, 692, 742
NsiI	ATGCAT	1 cut(s)	401
NspI	RCATGY	1 cut(s)	272
NspV	TTCGAA	1 cut(s)	64
OliI	CACNNNNGTG	1 cut(s)	390
PasI	CCCWGGG	1 cut(s)	854
PciI	ACATGT	1 cut(s)	268
PctI	GAATGC	2 cut(s)	32, 475
PfeI	GAWTC	3 cut(s)	371, 414, 859
PkrI	GCNGC	3 cut(s)	28, 31, 362
PmaCI	CACGTG	1 cut(s)	490
PmlI	CACGTG	1 cut(s)	490
Ppu21I	YACGTR	2 cut(s)	490, 510
PscI	ACATGT	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	763, 853
PspCI	CACGTG	1 cut(s)	490
PspEI	GGTNACC	1 cut(s)	95
PspGI	CCWGG	2 cut(s)	763, 853
PspN4I	GGNNCC	1 cut(s)	851
PspPI	GGNCC	1 cut(s)	299
PstNI	CAGNNNCTG	1 cut(s)	764
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	720
RsaNI	GTAC	1 cut(s)	719
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	3 cut(s)	27, 30, 361
Sau3AI	GATC	1 cut(s)	550
Sau96I	GGNCC	1 cut(s)	299
ScrFI	CCNGG	2 cut(s)	765, 855
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	9 cut(s)	31, 71, 292, 304, 492, 512, 720, 740, 766
SfaNI	GCATC	1 cut(s)	408
SfcI	CTRYAG	1 cut(s)	826
SfuI	TTCGAA	1 cut(s)	64
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	390
SpeI	ACTAGT	1 cut(s)	625
Sse9I	AATT	5 cut(s)	56, 330, 355, 568, 607
SsiI	CCGC	2 cut(s)	180, 847
SspMI	CTAG	2 cut(s)	474, 626
StyD4I	CCNGG	2 cut(s)	763, 853
TaaI	ACNGT	6 cut(s)	101, 134, 217, 313, 541, 830
TaiI	ACGT	2 cut(s)	492, 512
TaqI	TCGA	1 cut(s)	64
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	5 cut(s)	56, 330, 355, 568, 607
TfiI	GAWTC	3 cut(s)	371, 414, 859
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	1 cut(s)	651
TseFI	GTSAC	3 cut(s)	646, 692, 742
TseI	GCWGC	3 cut(s)	26, 29, 360
Tsp45I	GTSAC	3 cut(s)	646, 692, 742
TspDTI	ATGAA	2 cut(s)	211, 233
TspGWI	ACGGA	3 cut(s)	66, 189, 244
TspRI	CASTG	1 cut(s)	651
VpaK11BI	GGWCC	1 cut(s)	299
XceI	RCATGY	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	2 cut(s)	494, 801
XspI	CTAG	2 cut(s)	474, 626
Zsp2I	ATGCAT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.