AT4G05430

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005800
Physical Location & Seq
Forward (+)
2753124 .. 2754586
1463 bp
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UTR
Exon/CDS
Intron
AT4G05430.2

Sequence Viewer

Length: 432 bp
ATGACGATCAGACCAGAGTCACTAGTAGGGCCACAAGGGAACACGACGTTCTTGGAGGGAACAACATGGTGCGTGGCTAGACCAGGTGCGACACAAGCTGAGCTACAAAGAGCTCTTGATTGGGCATGTGGGATTGGGAGGGTAGATTGCTCAGTCATTGAGAGACATGGTGATTGTTACGAACCGGACACGATCGTATCGCATGCATCTTTTGCGTTTAATGCATATTACCAAACCAATGGGAACAATCGCATTGCTTGTTACTTCGGTGGAACAGCTACATTCACCAAGATTAACCCTAGCTACGGAAAATGCTCCTATGATGCATCCAAATCGGAAGTCTCCACCGCAAGATCTTTATCAGAGTACAAAGCTCGGTGGTTGCTGCTGATGTACATAGGAGTTTTTTCTCTTATTAGTCGGCGAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

143

Amino Acids

15.84

Weight (kDa)

7.58

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 47 - 119 9.4e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 348
AfaI GTAC 2 cut(s) 368, 395
AfiI CCNNNNNNNGG 1 cut(s) 305
AhlI ACTAGT 1 cut(s) 22
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 6 cut(s) 98, 103, 113, 278, 303, 374
AluI AGCT 6 cut(s) 98, 103, 113, 278, 303, 374
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 3 cut(s) 157, 346, 420
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 385
ArsI GACNNNNNNTTYG 2 cut(s) 324, 356
AspS9I GGNCC 1 cut(s) 29
AsuHPI GGTGA 2 cut(s) 182, 277
BaeI ACNNNNGTAYC 2 cut(s) 180, 213
BanII GRGCYC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 372
BcgI CGANNNNNNTGC 2 cut(s) 315, 349
BciT130I CCWGG 1 cut(s) 84
BcoDI GTCTC 3 cut(s) 157, 346, 420
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 3 cut(s) 23, 78, 300
BglII AGATCT 1 cut(s) 353
BisI GCNGC 1 cut(s) 386
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 387
Bme1390I CCNGG 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 3 cut(s) 215, 313, 335
BoxI GACNNNNGTC 1 cut(s) 16
Bpu1102I GCTNAGC 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 358
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 358
BseBI CCWGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 326
BseJI GATNNNNATC 1 cut(s) 358
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 2 cut(s) 90, 165
BseXI GCAGC 1 cut(s) 372
Bsh1285I CGRYCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 31
BsiEI CGRYCG 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 305
BsmAI GTCTC 3 cut(s) 157, 346, 420
BsnI GGCC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 115
Bsp1407I TGTACA 1 cut(s) 393
Bsp143I GATC 3 cut(s) 6, 192, 353
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 1 cut(s) 348
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 2 cut(s) 91, 164
BsrDI GCAATG 1 cut(s) 252
BsrGI TGTACA 1 cut(s) 393
BssMI GATC 3 cut(s) 6, 192, 353
Bst2UI CCWGG 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 212
BstAUI TGTACA 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 99, 151
BstF5I GGATG 1 cut(s) 326
BstKTI GATC 3 cut(s) 9, 195, 356
BstMAI GTCTC 3 cut(s) 157, 346, 420
BstMBI GATC 3 cut(s) 6, 192, 353
BstMCI CGRYCG 1 cut(s) 195
BstMWI GCNNNNNNNGC 3 cut(s) 95, 212, 221
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 2 cut(s) 129, 206
BstPAI GACNNNNGTC 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 353
BstXI CCANNNNNNTGG 1 cut(s) 239
BstYI RGATCY 1 cut(s) 353
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 326
Cac8I GCNNGC 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 29
CsiI ACCWGGT 1 cut(s) 82
Csp6I GTAC 2 cut(s) 367, 394
CviAII CATG 4 cut(s) 66, 126, 167, 203
CviJI RGCY 8 cut(s) 31, 77, 98, 103, 113, 278, 303, 374
CviKI_1 RGCY 8 cut(s) 31, 77, 98, 103, 113, 278, 303, 374
CviQI GTAC 2 cut(s) 367, 394
DdeI CTNAG 2 cut(s) 99, 151
DpnI GATC 3 cut(s) 8, 194, 355
DpnII GATC 3 cut(s) 6, 192, 353
Ecl136II GAGCTC 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 113
EcoICRI GAGCTC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 82
EcoT22I ATGCAT 3 cut(s) 208, 226, 328
EcoT38I GRGCYC 1 cut(s) 115
FaeI CATG 4 cut(s) 69, 129, 170, 206
FaiI YATR 7 cut(s) 67, 127, 168, 204, 226, 321, 398
FatI CATG 4 cut(s) 65, 125, 166, 202
Fnu4HI GCNGC 1 cut(s) 386
FokI GGATG 1 cut(s) 313
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 386
FspBI CTAG 3 cut(s) 23, 78, 300
GluI GCNGC 1 cut(s) 386
HaeIII GGCC 1 cut(s) 31
HapII CCGG 1 cut(s) 185
Hin1II CATG 4 cut(s) 69, 129, 170, 206
HinfI GANTC 1 cut(s) 17
HpaII CCGG 1 cut(s) 185
HphI GGTGA 2 cut(s) 182, 277
Hpy188I TCNGA 3 cut(s) 11, 337, 364
Hpy188III TCNNGA 1 cut(s) 116
Hpy99I CGWCG 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 3 cut(s) 206, 224, 326
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 212, 221
HpyF3I CTNAG 2 cut(s) 99, 151
HpySE526I ACGT 1 cut(s) 47
Hsp92II CATG 4 cut(s) 69, 129, 170, 206
Kzo9I GATC 3 cut(s) 6, 192, 353
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 4 cut(s) 27, 69, 96, 198
Lsp1109I GCAGC 1 cut(s) 372
LweI GCATC 3 cut(s) 215, 313, 335
MabI ACCWGGT 1 cut(s) 82
MaeI CTAG 3 cut(s) 23, 78, 300
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 3 cut(s) 18, 176, 260
MalI GATC 3 cut(s) 8, 194, 355
MboI GATC 3 cut(s) 6, 192, 353
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 115
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 2 cut(s) 49, 132
Mph1103I ATGCAT 3 cut(s) 208, 226, 328
MseI TTAA 2 cut(s) 219, 294
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 3 cut(s) 95, 212, 221
NdeII GATC 3 cut(s) 6, 192, 353
NlaIII CATG 4 cut(s) 69, 129, 170, 206
NmuCI GTSAC 1 cut(s) 18
NsiI ATGCAT 3 cut(s) 208, 226, 328
NspI RCATGY 2 cut(s) 129, 206
PaeI GCATGC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 387
Ple19I CGATCG 1 cut(s) 195
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PshAI GACNNNNGTC 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspPI GGNCC 1 cut(s) 29
PsuI RGATCY 1 cut(s) 353
PvuI CGATCG 1 cut(s) 195
RsaI GTAC 2 cut(s) 368, 395
RsaNI GTAC 2 cut(s) 367, 394
SacI GAGCTC 1 cut(s) 115
SaqAI TTAA 2 cut(s) 219, 294
SatI GCNGC 1 cut(s) 386
Sau3AI GATC 3 cut(s) 6, 192, 353
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 1 cut(s) 115
SetI ASST 8 cut(s) 50, 88, 100, 105, 115, 280, 305, 376
SexAI ACCWGGT 1 cut(s) 82
SfaNI GCATC 3 cut(s) 215, 313, 335
SpeI ACTAGT 1 cut(s) 22
SphI GCATGC 1 cut(s) 206
SsiI CCGC 1 cut(s) 348
SspMI CTAG 3 cut(s) 23, 78, 300
SstI GAGCTC 1 cut(s) 115
StyD4I CCNGG 1 cut(s) 82
TaiI ACGT 1 cut(s) 50
TatI WGTACW 2 cut(s) 366, 393
Tru1I TTAA 2 cut(s) 219, 294
Tru9I TTAA 2 cut(s) 219, 294
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 1 cut(s) 385
Tsp45I GTSAC 1 cut(s) 18
TspGWI ACGGA 1 cut(s) 321
XceI RCATGY 2 cut(s) 129, 206
XspI CTAG 3 cut(s) 23, 78, 300
Zsp2I ATGCAT 3 cut(s) 208, 226, 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.