RchiOBHm_Chr1g0364551

Serine-rich protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005800
Physical Location & Seq
Reverse (-)
55693472 .. 55693948
477 bp
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UTR
Exon/CDS
Intron
PRQ58923

Sequence Viewer

Length: 477 bp
ATGTCGGAAATCAGACTCCAGACCACCAGATTCTCGTCTCCGTCGTCTACCTTTTTCAACAACCACCAGGACCACCATAGCCACTACCACCACACCGACTACCACCACCACCGTTCCGCTTCACCGACGCACATCAATCTCTACACCTCCAGTACTCTATCTCTAGCTTTTCGCTTCTCCATCGAGCACTATTCCATCTCCCCAAACCGATCCGTCACCACTTCCAAGAAGAACGGCCCGATCGCGGCGGCTAGGAAGATGTGTATGTGCTCGCCGACGAATCATCCAAACTTGTTTCGTTGCAGATCTGCCATGACGAACTCGTTGGTTCGAATCAGTGGAGTCGAGGGGGAGTGGGTGAAGAGAGCCTTCACGGCTCTATTCGTCCTTCTACGCACCAGCAGAGGCAGAGAACTGGGTTTCTCTATTTTTCCGATCTTAGATTCTAGCGAGTCAACTCCAAGTAGCCACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.95

Weight (kDa)

9.84

Isoelectric Point (pI)

66.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 47
AccII CGCG 1 cut(s) 245
AciI CCGC 3 cut(s) 117, 245, 248
AclWI GGATC 1 cut(s) 204
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 1 cut(s) 58
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw21I GWGCWC 2 cut(s) 189, 272
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 204
AoxI GGCC 1 cut(s) 235
AspS9I GGNCC 2 cut(s) 70, 236
AsuHPI GGTGA 3 cut(s) 114, 208, 370
AsuII TTCGAA 1 cut(s) 331
AvaII GGWCC 1 cut(s) 70
BauI CACGAG 1 cut(s) 470
Bbv12I GWGCWC 2 cut(s) 189, 272
BccI CCATC 2 cut(s) 188, 203
BceAI ACGGC 2 cut(s) 250, 390
BciT130I CCWGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 3 cut(s) 164, 252, 447
BglI GCCNNNNNGGC 1 cut(s) 374
BglII AGATCT 1 cut(s) 305
BisI GCNGC 2 cut(s) 246, 249
BlsI GCNGC 2 cut(s) 247, 250
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 70, 236
BmrFI CCNGG 1 cut(s) 68
BmrI ACTGGG 1 cut(s) 425
BmuI ACTGGG 1 cut(s) 425
BpmI CTGGAG 1 cut(s) 133
Bpu14I TTCGAA 1 cut(s) 331
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 2 cut(s) 150, 420
BseBI CCWGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 244
BseNI ACTGG 2 cut(s) 150, 420
Bsh1236I CGCG 1 cut(s) 245
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 1 cut(s) 237
BsiEI CGRYCG 1 cut(s) 243
BsiHKAI GWGCWC 2 cut(s) 189, 272
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 42
BsmBI CGTCTC 1 cut(s) 42
BsnI GGCC 1 cut(s) 237
Bsp119I TTCGAA 1 cut(s) 331
Bsp1286I GDGCHC 2 cut(s) 189, 272
Bsp143I GATC 4 cut(s) 209, 240, 305, 435
BspACI CCGC 3 cut(s) 117, 245, 248
BspANI GGCC 1 cut(s) 237
BspFNI CGCG 1 cut(s) 245
BspPI GGATC 1 cut(s) 204
BspT104I TTCGAA 1 cut(s) 331
BsrI ACTGG 2 cut(s) 150, 420
BssMI GATC 4 cut(s) 209, 240, 305, 435
BssSI CACGAG 1 cut(s) 470
Bst2BI CACGAG 1 cut(s) 470
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 356
BstBI TTCGAA 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 439
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 1 cut(s) 245
BstKTI GATC 4 cut(s) 212, 243, 308, 438
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 4 cut(s) 209, 240, 305, 435
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstUI CGCG 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BsuRI GGCC 1 cut(s) 237
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 70, 236
CseI GACGC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 153
CviAII CATG 1 cut(s) 313
CviJI RGCY 7 cut(s) 81, 167, 237, 251, 368, 377, 468
CviKI_1 RGCY 7 cut(s) 81, 167, 237, 251, 368, 377, 468
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 1 cut(s) 439
DpnI GATC 4 cut(s) 211, 242, 307, 437
DpnII GATC 4 cut(s) 209, 240, 305, 435
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 66
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 1 cut(s) 316
FaiI YATR 3 cut(s) 78, 266, 314
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FatI CATG 1 cut(s) 312
FblI GTMKAC 1 cut(s) 47
Fnu4HI GCNGC 2 cut(s) 246, 249
FokI GGATG 1 cut(s) 270
Fsp4HI GCNGC 2 cut(s) 246, 249
FspBI CTAG 3 cut(s) 164, 252, 447
GluI GCNGC 2 cut(s) 246, 249
GsuI CTGGAG 1 cut(s) 133
HaeIII GGCC 1 cut(s) 237
HgaI GACGC 1 cut(s) 136
Hin1II CATG 1 cut(s) 316
HincII GTYRAC 1 cut(s) 456
HindII GTYRAC 1 cut(s) 456
HinfI GANTC 7 cut(s) 15, 30, 280, 333, 342, 443, 452
HphI GGTGA 3 cut(s) 114, 208, 370
Hpy166II GTNNAC 2 cut(s) 48, 456
Hpy188I TCNGA 3 cut(s) 7, 14, 435
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 2 cut(s) 48, 456
Hpy99I CGWCG 3 cut(s) 46, 130, 280
HpyAV CCTTC 2 cut(s) 379, 398
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 1 cut(s) 439
Hsp92II CATG 1 cut(s) 316
Kzo9I GATC 4 cut(s) 209, 240, 305, 435
LpnPI CCDG 7 cut(s) 32, 40, 53, 80, 163, 401, 412
MaeI CTAG 3 cut(s) 164, 252, 447
MaeIII GTNAC 1 cut(s) 214
MalI GATC 4 cut(s) 211, 242, 307, 437
MboI GATC 4 cut(s) 209, 240, 305, 435
MboII GAAGA 3 cut(s) 241, 268, 373
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 2 cut(s) 189, 272
MlyI GAGTC 3 cut(s) 9, 351, 461
MnlI CCTC 3 cut(s) 157, 340, 398
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 374
NdeII GATC 4 cut(s) 209, 240, 305, 435
NlaIII CATG 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 214
NspV TTCGAA 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PfeI GAWTC 4 cut(s) 30, 280, 333, 443
PkrI GCNGC 2 cut(s) 247, 250
Ple19I CGATCG 1 cut(s) 243
PleI GAGTC 3 cut(s) 9, 350, 460
PpsI GAGTC 3 cut(s) 9, 350, 460
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspPI GGNCC 2 cut(s) 70, 236
PsuI RGATCY 1 cut(s) 305
PvuI CGATCG 1 cut(s) 243
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SatI GCNGC 2 cut(s) 246, 249
Sau3AI GATC 4 cut(s) 209, 240, 305, 435
Sau96I GGNCC 2 cut(s) 70, 236
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 3 cut(s) 9, 351, 461
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 2 cut(s) 189, 272
SetI ASST 3 cut(s) 53, 149, 169
SfuI TTCGAA 1 cut(s) 331
SinI GGWCC 1 cut(s) 70
SsiI CCGC 3 cut(s) 117, 245, 248
SspMI CTAG 3 cut(s) 164, 252, 447
StyD4I CCNGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 3 cut(s) 183, 331, 345
TatI WGTACW 1 cut(s) 152
TauI GCSGC 2 cut(s) 248, 251
TfiI GAWTC 4 cut(s) 30, 280, 333, 443
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspGWI ACGGA 2 cut(s) 30, 202
TspRI CASTG 1 cut(s) 343
VpaK11BI GGWCC 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 47
XspI CTAG 3 cut(s) 164, 252, 447
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.