Rh1AG325100

Serine-rich protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005800
Physical Location & Seq
Reverse (-)
55866630 .. 55866980
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG325100.1

Sequence Viewer

Length: 351 bp
ATGCATATCAATCTCTACACCTCCAGTACTCTATCTCTAGCTTTTCGCTTCTCCATCGAGCACTATTCCATCTCCCCAAACCGATCCATCACCACTTCCAAGAAGAACGGCCCGATCGCGGCGGCTAGGAAGATGTGTATGTGCTCGCCGACGAATCATCCAAACTTGTTTCGTTGCAGATCTGCCATGACGAACTCGCTGGTTCGAATCAGTGGAGTTGAGGGGGAGTGGGTGAAGAGAGCCTTCACGGCTCTATTCGTCTTTCTATGCACCAGCAGAGGCAGAGAACTGGGTTTCTCTATTTTTCCGATCTTAGATTCTAGCGAGTCAACTCCAAGTAGCCACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.94

Weight (kDa)

9.61

Isoelectric Point (pI)

59.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 119
AciI CCGC 2 cut(s) 119, 122
AclWI GGATC 1 cut(s) 78
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 118
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw21I GWGCWC 2 cut(s) 63, 146
AlwI GGATC 1 cut(s) 78
AoxI GGCC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 82, 244
AsuII TTCGAA 1 cut(s) 205
BauI CACGAG 1 cut(s) 344
Bbv12I GWGCWC 2 cut(s) 63, 146
BccI CCATC 3 cut(s) 62, 77, 95
BceAI ACGGC 2 cut(s) 124, 264
BfaI CTAG 3 cut(s) 38, 126, 321
BglI GCCNNNNNGGC 1 cut(s) 248
BglII AGATCT 1 cut(s) 179
BisI GCNGC 2 cut(s) 120, 123
BlsI GCNGC 2 cut(s) 121, 124
BmcAI AGTACT 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 110
BmrI ACTGGG 1 cut(s) 299
BmuI ACTGGG 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 7
Bpu14I TTCGAA 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 2 cut(s) 24, 294
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 118
BseNI ACTGG 2 cut(s) 24, 294
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 111
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 2 cut(s) 63, 146
BslI CCNNNNNNNGG 1 cut(s) 118
BsnI GGCC 1 cut(s) 111
Bsp119I TTCGAA 1 cut(s) 205
Bsp1286I GDGCHC 2 cut(s) 63, 146
Bsp143I GATC 4 cut(s) 83, 114, 179, 309
BspACI CCGC 2 cut(s) 119, 122
BspANI GGCC 1 cut(s) 111
BspFNI CGCG 1 cut(s) 119
BspPI GGATC 1 cut(s) 78
BspT104I TTCGAA 1 cut(s) 205
BsrI ACTGG 2 cut(s) 24, 294
BssMI GATC 4 cut(s) 83, 114, 179, 309
BssSI CACGAG 1 cut(s) 344
Bst2BI CACGAG 1 cut(s) 344
Bst6I CTCTTC 1 cut(s) 230
BstBI TTCGAA 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 313
BstF5I GGATG 1 cut(s) 157
BstFNI CGCG 1 cut(s) 119
BstKTI GATC 4 cut(s) 86, 117, 182, 312
BstMBI GATC 4 cut(s) 83, 114, 179, 309
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstUI CGCG 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 27
CviAII CATG 1 cut(s) 187
CviJI RGCY 6 cut(s) 41, 111, 125, 242, 251, 342
CviKI_1 RGCY 6 cut(s) 41, 111, 125, 242, 251, 342
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 1 cut(s) 313
DpnI GATC 4 cut(s) 85, 116, 181, 311
DpnII GATC 4 cut(s) 83, 114, 179, 309
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 190
FaiI YATR 4 cut(s) 6, 140, 188, 268
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FatI CATG 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 120, 123
FokI GGATG 1 cut(s) 144
Fsp4HI GCNGC 2 cut(s) 120, 123
FspBI CTAG 3 cut(s) 38, 126, 321
GluI GCNGC 2 cut(s) 120, 123
GsuI CTGGAG 1 cut(s) 7
HaeIII GGCC 1 cut(s) 111
Hin1II CATG 1 cut(s) 190
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 4 cut(s) 154, 207, 317, 326
HphI GGTGA 2 cut(s) 82, 244
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 1 cut(s) 309
Hpy8I GTNNAC 1 cut(s) 330
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 253
HpyCH4V TGCA 3 cut(s) 4, 177, 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 313
Hsp92II CATG 1 cut(s) 190
Kzo9I GATC 4 cut(s) 83, 114, 179, 309
LpnPI CCDG 4 cut(s) 37, 185, 275, 286
MaeI CTAG 3 cut(s) 38, 126, 321
MalI GATC 4 cut(s) 85, 116, 181, 311
MboI GATC 4 cut(s) 83, 114, 179, 309
MboII GAAGA 3 cut(s) 115, 142, 247
MflI RGATCY 1 cut(s) 179
MhlI GDGCHC 2 cut(s) 63, 146
MlyI GAGTC 1 cut(s) 335
MnlI CCTC 3 cut(s) 31, 214, 272
Mph1103I ATGCAT 1 cut(s) 6
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeII GATC 4 cut(s) 83, 114, 179, 309
NlaIII CATG 1 cut(s) 190
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 205
PfeI GAWTC 3 cut(s) 154, 207, 317
PkrI GCNGC 2 cut(s) 121, 124
Ple19I CGATCG 1 cut(s) 117
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PspPI GGNCC 1 cut(s) 110
PsuI RGATCY 1 cut(s) 179
PvuI CGATCG 1 cut(s) 117
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SatI GCNGC 2 cut(s) 120, 123
Sau3AI GATC 4 cut(s) 83, 114, 179, 309
Sau96I GGNCC 1 cut(s) 110
ScaI AGTACT 1 cut(s) 28
SchI GAGTC 1 cut(s) 335
SduI GDGCHC 2 cut(s) 63, 146
SetI ASST 2 cut(s) 23, 43
SfuI TTCGAA 1 cut(s) 205
SsiI CCGC 2 cut(s) 119, 122
SspMI CTAG 3 cut(s) 38, 126, 321
TaqI TCGA 2 cut(s) 57, 205
TatI WGTACW 1 cut(s) 26
TauI GCSGC 2 cut(s) 122, 125
TfiI GAWTC 3 cut(s) 154, 207, 317
TscAI CASTG 1 cut(s) 217
TspRI CASTG 1 cut(s) 217
XspI CTAG 3 cut(s) 38, 126, 321
ZrmI AGTACT 1 cut(s) 28
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.