Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012407.1

Orthogroup ID

OG0005800

Physical Location & Seq

Genomic Coordinates Reverse (-)

2284 .. 2760

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012407.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgtcggaaatcagactccagactaccagcttcttgtctccatcgtctgcctttttcaacaaccaccaggaccaccatagccactaccaccacatcgactaccaccgccaccgttccgcttcaccgacgcatatcaatctctacacctccagtgctctgtctctagattttcgcttctccatcgagcaccgttccatctccccaaaccgatccatcaccacttccaagaagaacggtcggatcgcggcggccaggaagatgcgtatgtgctcgccgacgaatcatccaagcttgtttcgctgcagatcttccatgatgaactcgctggttcgaatcagtggagtcgagggggagtgggtgaagagagccttcacggctctattcgtccttctacgcaccagcagaggcagagaaccgggtttctctattttttcgatcttagattctggcgagtcaacactaagtagccacgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

18.02

Weight (kDa)

10.56

Isoelectric Point (pI)

65.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05430 AT4G05430 AT4G05430
fragaria_vesca	FvH4_3g09670
malus_domestica	MD00G1109800.v1.1 MD05G1276200.v1.1
prunus_persica	Prupe.4G088100_v2.0.a1 Prupe.4G088100_v2.0.a1 Prupe.4G088100_v2.0.a1 Prupe.4G088100_v2.0.a1
pyrus_communis	pycom05g25720
rosa_chinensis	RchiOBHm_Chr1g0364551 RchiOBHm_Chr5g0015351
rosa_laevigata	RLG00000032194
rosa_multiflora	Rmu_sc0012407.1_g000001 Rmu_sc0012407.1_g000002 Rmu_sc0013747.1_g000001 Rmu_sc0014430.1_g000002 Rmu_sc0017755.1_g000006
rosa_roxburghii	Rroxscaffold_1G00061100
rosa_rugosa	Rorug05G0026800
rosa_samantha	Rh1AG325100 Rh5AG120300 Rh5BG119200 Rh5CG129700 Rh5DG118300
rosa_wichuraiana	Rw1G028820 Rw5G010400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	245
AciI	CCGC	4 cut(s)	106, 117, 245, 248
AclWI	GGATC	2 cut(s)	204, 248
AcoI	YGGCCR	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	2 cut(s)	66, 251
AluBI	AGCT	2 cut(s)	30, 291
AluI	AGCT	2 cut(s)	30, 291
Alw21I	GWGCWC	3 cut(s)	157, 189, 272
Alw26I	GTCTC	2 cut(s)	42, 165
AlwI	GGATC	2 cut(s)	204, 248
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	3 cut(s)	114, 208, 370
AsuII	TTCGAA	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	70
BauI	CACGAG	1 cut(s)	470
Bbv12I	GWGCWC	3 cut(s)	157, 189, 272
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	4 cut(s)	49, 188, 203, 221
BceAI	ACGGC	1 cut(s)	390
BciT130I	CCWGG	2 cut(s)	68, 253
BcnI	CCSGG	1 cut(s)	417
BcoDI	GTCTC	2 cut(s)	42, 165
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	301
BglI	GCCNNNNNGGC	1 cut(s)	374
BglII	AGATCT	1 cut(s)	305
BisI	GCNGC	3 cut(s)	246, 249, 301
BlsI	GCNGC	3 cut(s)	247, 250, 302
Bme1390I	CCNGG	3 cut(s)	68, 253, 417
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmrFI	CCNGG	3 cut(s)	68, 253, 417
BmsI	GCATC	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	133
Bpu14I	TTCGAA	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	68, 253
BseGI	GGATG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	245
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	251
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	3 cut(s)	157, 189, 272
BsiSI	CCGG	1 cut(s)	416
BsmAI	GTCTC	2 cut(s)	42, 165
BsnI	GGCC	1 cut(s)	251
Bsp119I	TTCGAA	1 cut(s)	331
Bsp1286I	GDGCHC	3 cut(s)	157, 189, 272
Bsp143I	GATC	4 cut(s)	209, 240, 305, 435
BspACI	CCGC	4 cut(s)	106, 117, 245, 248
BspANI	GGCC	1 cut(s)	251
BspFNI	CGCG	1 cut(s)	245
BspMAI	CTGCAG	1 cut(s)	305
BspPI	GGATC	2 cut(s)	204, 248
BspT104I	TTCGAA	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	150
BssMI	GATC	4 cut(s)	209, 240, 305, 435
BssSI	CACGAG	1 cut(s)	470
Bst2BI	CACGAG	1 cut(s)	470
Bst2UI	CCWGG	2 cut(s)	68, 253
Bst4CI	ACNGT	3 cut(s)	113, 191, 236
Bst6I	CTCTTC	1 cut(s)	356
BstBI	TTCGAA	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	2 cut(s)	439, 461
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	245
BstKTI	GATC	4 cut(s)	212, 243, 308, 438
BstMAI	GTCTC	2 cut(s)	42, 165
BstMBI	GATC	4 cut(s)	209, 240, 305, 435
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 374
BstNI	CCWGG	2 cut(s)	68, 253
BstSCI	CCNGG	3 cut(s)	66, 251, 415
BstSFI	CTRYAG	1 cut(s)	301
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	287
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	2 cut(s)	157, 343
Cac8I	GCNNGC	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	70
CseI	GACGC	1 cut(s)	136
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	7 cut(s)	30, 81, 251, 291, 368, 377, 468
CviKI_1	RGCY	7 cut(s)	30, 81, 251, 291, 368, 377, 468
DdeI	CTNAG	2 cut(s)	439, 461
DpnI	GATC	4 cut(s)	211, 242, 307, 437
DpnII	GATC	4 cut(s)	209, 240, 305, 435
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Eco47I	GGWCC	1 cut(s)	70
EcoRII	CCWGG	2 cut(s)	66, 251
FaeI	CATG	1 cut(s)	316
FaiI	YATR	4 cut(s)	78, 132, 266, 314
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	1 cut(s)	312
Fnu4HI	GCNGC	3 cut(s)	246, 249, 301
FokI	GGATG	1 cut(s)	270
Fsp4HI	GCNGC	3 cut(s)	246, 249, 301
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	3 cut(s)	246, 249, 301
GsuI	CTGGAG	1 cut(s)	133
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	1 cut(s)	416
HgaI	GACGC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	316
HincII	GTYRAC	1 cut(s)	456
HindII	GTYRAC	1 cut(s)	456
HindIII	AAGCTT	1 cut(s)	289
HinfI	GANTC	6 cut(s)	15, 280, 333, 342, 443, 452
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	3 cut(s)	114, 208, 370
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	3 cut(s)	7, 14, 240
Hpy188III	TCNNGA	2 cut(s)	19, 164
Hpy8I	GTNNAC	1 cut(s)	456
Hpy99I	CGWCG	2 cut(s)	130, 280
HpyAV	CCTTC	2 cut(s)	379, 398
HpyCH4III	ACNGT	3 cut(s)	113, 191, 236
HpyCH4V	TGCA	1 cut(s)	303
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 374
HpyF3I	CTNAG	2 cut(s)	439, 461
Hsp92II	CATG	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	209, 240, 305, 435
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	1 cut(s)	164
MalI	GATC	4 cut(s)	211, 242, 307, 437
MboI	GATC	4 cut(s)	209, 240, 305, 435
MboII	GAAGA	4 cut(s)	241, 268, 300, 373
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	3 cut(s)	157, 189, 272
MlyI	GAGTC	3 cut(s)	9, 351, 461
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	3 cut(s)	157, 340, 398
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	3 cut(s)	68, 253, 417
MvaI	CCWGG	2 cut(s)	68, 253
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	297, 374
NciI	CCSGG	1 cut(s)	417
NdeII	GATC	4 cut(s)	209, 240, 305, 435
NlaIII	CATG	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	331
PfeI	GAWTC	3 cut(s)	280, 333, 443
PkrI	GCNGC	3 cut(s)	247, 250, 302
PleI	GAGTC	3 cut(s)	9, 350, 460
PpsI	GAGTC	3 cut(s)	9, 350, 460
Psp6I	CCWGG	2 cut(s)	66, 251
PspGI	CCWGG	2 cut(s)	66, 251
PspPI	GGNCC	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	305
SatI	GCNGC	3 cut(s)	246, 249, 301
Sau3AI	GATC	4 cut(s)	209, 240, 305, 435
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	3 cut(s)	9, 351, 461
ScrFI	CCNGG	3 cut(s)	68, 253, 417
SduI	GDGCHC	3 cut(s)	157, 189, 272
SetI	ASST	3 cut(s)	32, 149, 293
SfaNI	GCATC	1 cut(s)	249
SfcI	CTRYAG	1 cut(s)	301
SfuI	TTCGAA	1 cut(s)	331
SinI	GGWCC	1 cut(s)	70
SsiI	CCGC	4 cut(s)	106, 117, 245, 248
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	3 cut(s)	66, 251, 415
TaaI	ACNGT	3 cut(s)	113, 191, 236
TaqI	TCGA	5 cut(s)	96, 183, 331, 345, 434
TauI	GCSGC	2 cut(s)	248, 251
TfiI	GAWTC	3 cut(s)	280, 333, 443
TscAI	CASTG	2 cut(s)	157, 343
TseI	GCWGC	1 cut(s)	300
TspDTI	ATGAA	1 cut(s)	332
TspRI	CASTG	2 cut(s)	157, 343
VpaK11BI	GGWCC	1 cut(s)	70
XbaI	TCTAGA	1 cut(s)	163
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.