Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005800

Physical Location & Seq

Genomic Coordinates Reverse (-)

56535010 .. 56535471

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G028820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTCGGAAATCAGACTCCAGACCACCAGCTTCTCGTCTCCGTCGTCTGCCTTTTTCAACAACCACCAGGACCACCATAGCCACTACCACCACCACCGTTCCGCTTCACCGACGCATATCAATCTCTACACCTCCAGTACTCTATCTCTAGCTTTTCGCTTCTCCATCGAGCACTATTCCATCTCCCCAAACCGATCCATCACCACTTCCAAGAAGAACGGCCCGATCGCGGCGGCTAGGAAGATGTGTATGTGCTCGCCGACGAATCATCCAAACTTGTTTCGTTGCAGATCTGCCATGACGAACTCGTTGGTTCGAATCAGTGGAGTCGAGGGGGAGTGGGTGAAGAGAGCCTTCACGGCTCTATTCGTCCTTCTACGCACCAGCAGAGGCAGAGAACTGGGTTTCTCTATTTTTCCGATCTTAGATTCTAGCGAGTCAACTCCAAGTAGCCACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.21

Weight (kDa)

9.93

Isoelectric Point (pI)

67.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05430 AT4G05430 AT4G05430
fragaria_vesca	FvH4_3g09670
malus_domestica	MD00G1109800.v1.1 MD05G1276200.v1.1
prunus_persica	Prupe.4G088100_v2.0.a1 Prupe.4G088100_v2.0.a1 Prupe.4G088100_v2.0.a1 Prupe.4G088100_v2.0.a1
pyrus_communis	pycom05g25720
rosa_chinensis	RchiOBHm_Chr1g0364551 RchiOBHm_Chr5g0015351
rosa_laevigata	RLG00000032194
rosa_multiflora	Rmu_sc0012407.1_g000001 Rmu_sc0012407.1_g000002 Rmu_sc0013747.1_g000001 Rmu_sc0014430.1_g000002 Rmu_sc0017755.1_g000006
rosa_roxburghii	Rroxscaffold_1G00061100
rosa_rugosa	Rorug05G0026800
rosa_samantha	Rh1AG325100 Rh5AG120300 Rh5BG119200 Rh5CG129700 Rh5DG118300
rosa_wichuraiana	Rw1G028820 Rw5G010400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	230
AciI	CCGC	3 cut(s)	102, 230, 233
AclWI	GGATC	1 cut(s)	189
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	2 cut(s)	30, 152
AluI	AGCT	2 cut(s)	30, 152
Alw21I	GWGCWC	2 cut(s)	174, 257
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	70, 221
AsuHPI	GGTGA	3 cut(s)	99, 193, 355
AsuII	TTCGAA	1 cut(s)	316
AvaII	GGWCC	1 cut(s)	70
BauI	CACGAG	1 cut(s)	455
Bbv12I	GWGCWC	2 cut(s)	174, 257
BccI	CCATC	3 cut(s)	173, 188, 206
BceAI	ACGGC	2 cut(s)	235, 375
BciT130I	CCWGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	3 cut(s)	149, 237, 432
BglI	GCCNNNNNGGC	1 cut(s)	359
BglII	AGATCT	1 cut(s)	290
BisI	GCNGC	2 cut(s)	231, 234
BlsI	GCNGC	2 cut(s)	232, 235
BmcAI	AGTACT	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	70, 221
BmrFI	CCNGG	1 cut(s)	68
BmrI	ACTGGG	1 cut(s)	410
BmuI	ACTGGG	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	118
Bpu14I	TTCGAA	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	135, 405
BseBI	CCWGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseNI	ACTGG	2 cut(s)	135, 405
Bsh1236I	CGCG	1 cut(s)	230
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	222
BsiEI	CGRYCG	1 cut(s)	228
BsiHKAI	GWGCWC	2 cut(s)	174, 257
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	42
BsmBI	CGTCTC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	222
Bsp119I	TTCGAA	1 cut(s)	316
Bsp1286I	GDGCHC	2 cut(s)	174, 257
Bsp143I	GATC	4 cut(s)	194, 225, 290, 420
BspACI	CCGC	3 cut(s)	102, 230, 233
BspANI	GGCC	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	230
BspPI	GGATC	1 cut(s)	189
BspT104I	TTCGAA	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	135, 405
BssMI	GATC	4 cut(s)	194, 225, 290, 420
BssSI	CACGAG	1 cut(s)	455
Bst2BI	CACGAG	1 cut(s)	455
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	341
BstBI	TTCGAA	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	268
BstFNI	CGCG	1 cut(s)	230
BstKTI	GATC	4 cut(s)	197, 228, 293, 423
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	4 cut(s)	194, 225, 290, 420
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	66
BstUI	CGCG	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	257
Cfr13I	GGNCC	2 cut(s)	70, 221
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	8 cut(s)	30, 81, 152, 222, 236, 353, 362, 453
CviKI_1	RGCY	8 cut(s)	30, 81, 152, 222, 236, 353, 362, 453
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	1 cut(s)	424
DpnI	GATC	4 cut(s)	196, 227, 292, 422
DpnII	GATC	4 cut(s)	194, 225, 290, 420
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	1 cut(s)	301
FaiI	YATR	4 cut(s)	78, 117, 251, 299
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	1 cut(s)	297
Fnu4HI	GCNGC	2 cut(s)	231, 234
FokI	GGATG	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	231, 234
FspBI	CTAG	3 cut(s)	149, 237, 432
GluI	GCNGC	2 cut(s)	231, 234
GsuI	CTGGAG	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	222
HgaI	GACGC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	301
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	6 cut(s)	15, 265, 318, 327, 428, 437
HphI	GGTGA	3 cut(s)	99, 193, 355
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	3 cut(s)	7, 14, 420
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	1 cut(s)	441
Hpy99I	CGWCG	3 cut(s)	46, 115, 265
HpyAV	CCTTC	2 cut(s)	364, 383
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4V	TGCA	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	1 cut(s)	424
Hsp92II	CATG	1 cut(s)	301
Kzo9I	GATC	4 cut(s)	194, 225, 290, 420
LpnPI	CCDG	7 cut(s)	32, 40, 53, 80, 148, 386, 397
MaeI	CTAG	3 cut(s)	149, 237, 432
MalI	GATC	4 cut(s)	196, 227, 292, 422
MboI	GATC	4 cut(s)	194, 225, 290, 420
MboII	GAAGA	3 cut(s)	226, 253, 358
MflI	RGATCY	1 cut(s)	290
MhlI	GDGCHC	2 cut(s)	174, 257
MlyI	GAGTC	3 cut(s)	9, 336, 446
MnlI	CCTC	3 cut(s)	142, 325, 383
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	359
NdeII	GATC	4 cut(s)	194, 225, 290, 420
NlaIII	CATG	1 cut(s)	301
NspV	TTCGAA	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PfeI	GAWTC	3 cut(s)	265, 318, 428
PkrI	GCNGC	2 cut(s)	232, 235
Ple19I	CGATCG	1 cut(s)	228
PleI	GAGTC	3 cut(s)	9, 335, 445
PpsI	GAGTC	3 cut(s)	9, 335, 445
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspPI	GGNCC	2 cut(s)	70, 221
PsuI	RGATCY	1 cut(s)	290
PvuI	CGATCG	1 cut(s)	228
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SatI	GCNGC	2 cut(s)	231, 234
Sau3AI	GATC	4 cut(s)	194, 225, 290, 420
Sau96I	GGNCC	2 cut(s)	70, 221
ScaI	AGTACT	1 cut(s)	139
SchI	GAGTC	3 cut(s)	9, 336, 446
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	2 cut(s)	174, 257
SetI	ASST	3 cut(s)	32, 134, 154
SfuI	TTCGAA	1 cut(s)	316
SinI	GGWCC	1 cut(s)	70
SsiI	CCGC	3 cut(s)	102, 230, 233
SspMI	CTAG	3 cut(s)	149, 237, 432
StyD4I	CCNGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	98
TaqI	TCGA	3 cut(s)	168, 316, 330
TatI	WGTACW	1 cut(s)	137
TauI	GCSGC	2 cut(s)	233, 236
TfiI	GAWTC	3 cut(s)	265, 318, 428
TscAI	CASTG	1 cut(s)	328
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	70
XspI	CTAG	3 cut(s)	149, 237, 432
ZrmI	AGTACT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.