Rh5CG129700

glucan endo-1,3-beta-glucosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005800
Physical Location & Seq
Forward (+)
10798499 .. 10801539
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG129700.1

Sequence Viewer

Length: 456 bp
ATGGGAGTTGGTGTGGAAGAGAAAGTAGATGGTGCAATACCAGTGACCACATTGTCACCACCAGAAGGGAACACAACATTCATTGATGGCACAACATGGTGTGTGGCTCTTGCTGGTGTCCCCCAAGATGATCTGCAGAATGCATTAGATTGGGCCTGTGGGCTCGGAATGGCAGACTGCAAGGCCATCCAAGAAGGCGGGCCCTGTTACGATCCAGACACTCTCTTATCTCATGCTTCCTTCGCTTTCAATAGCTACTATCAACAGAATGGGAATTCTGATATTGCTTGCAATTTTGGGGGCACTGCTGCTGTCACTAAACATAACCCAAGTTATGGAAAATGTGTCTATGCTGCTCCTGGATCTGTAGGCTCTGCAGCACCTCCATTGTTGAGCTTTATTTGGTGGTGGAAACTTGCTCTCCTTTGTTTACTGCTTTTGTATCTAAGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

151

Amino Acids

15.97

Weight (kDa)

4.39

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 32 - 103 1.1e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AccB7I CCANNNNNTGG 1 cut(s) 335
AciI CCGC 1 cut(s) 198
AclWI GGATC 2 cut(s) 206, 370
AcsI RAATTY 1 cut(s) 274
AfiI CCNNNNNNNGG 2 cut(s) 65, 335
AgsI TTSAA 1 cut(s) 250
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 3 cut(s) 255, 396, 453
AluI AGCT 3 cut(s) 255, 396, 453
AlwI GGATC 2 cut(s) 206, 370
AoxI GGCC 3 cut(s) 153, 183, 200
ApaI GGGCCC 1 cut(s) 204
ApeKI GCWGC 3 cut(s) 308, 353, 377
ApoI RAATTY 1 cut(s) 274
AspS9I GGNCC 3 cut(s) 153, 200, 201
AsuHPI GGTGA 1 cut(s) 48
BaeGI GKGCMC 2 cut(s) 204, 305
BanII GRGCYC 2 cut(s) 165, 204
BbvI GCAGC 3 cut(s) 295, 340, 389
BccI CCATC 3 cut(s) 23, 80, 194
BciT130I CCWGG 1 cut(s) 360
BfmI CTRYAG 3 cut(s) 134, 366, 375
BisI GCNGC 3 cut(s) 309, 354, 378
BlsI GCNGC 3 cut(s) 310, 355, 379
Bme1390I CCNGG 1 cut(s) 360
BmgT120I GGNCC 3 cut(s) 153, 200, 201
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 360
BsaXI ACNNNNNCTCC 3 cut(s) 27, 405, 435
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 335
Bse1I ACTGG 1 cut(s) 41
BseBI CCWGG 1 cut(s) 360
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 65, 335
BseNI ACTGG 1 cut(s) 41
BseSI GKGCMC 2 cut(s) 204, 305
BseXI GCAGC 3 cut(s) 295, 340, 389
BshFI GGCC 3 cut(s) 155, 185, 202
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 65, 335
BsmFI GGGAC 1 cut(s) 104
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 3 cut(s) 155, 185, 202
Bsp120I GGGCCC 1 cut(s) 200
Bsp1286I GDGCHC 3 cut(s) 165, 204, 305
Bsp143I GATC 3 cut(s) 130, 211, 362
BspACI CCGC 1 cut(s) 198
BspANI GGCC 3 cut(s) 155, 185, 202
BspLI GGNNCC 1 cut(s) 202
BspMAI CTGCAG 2 cut(s) 138, 379
BspPI GGATC 2 cut(s) 206, 370
BsrI ACTGG 1 cut(s) 41
BssMI GATC 3 cut(s) 130, 211, 362
Bst2UI CCWGG 1 cut(s) 360
Bst6I CTCTTC 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 200, 289
BstDEI CTNAG 1 cut(s) 446
BstF5I GGATG 1 cut(s) 186
BstKTI GATC 3 cut(s) 133, 214, 365
BstMBI GATC 3 cut(s) 130, 211, 362
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 358
BstSFI CTRYAG 3 cut(s) 134, 366, 375
BstSLI GKGCMC 2 cut(s) 204, 305
BstV1I GCAGC 3 cut(s) 295, 340, 389
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BsuRI GGCC 3 cut(s) 155, 185, 202
BtsCI GGATG 1 cut(s) 186
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 2 cut(s) 48, 303
Cac8I GCNNGC 2 cut(s) 200, 289
Cfr13I GGNCC 3 cut(s) 153, 200, 201
CviAII CATG 2 cut(s) 96, 233
CviJI RGCY 9 cut(s) 107, 155, 163, 185, 202, 255, 372, 396, 453
CviKI_1 RGCY 9 cut(s) 107, 155, 163, 185, 202, 255, 372, 396, 453
DdeI CTNAG 1 cut(s) 446
DpnI GATC 3 cut(s) 132, 213, 364
DpnII GATC 3 cut(s) 130, 211, 362
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco24I GRGCYC 2 cut(s) 165, 204
EcoO109I RGGNCCY 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 358
EcoT22I ATGCAT 1 cut(s) 145
EcoT38I GRGCYC 2 cut(s) 165, 204
FaeI CATG 2 cut(s) 99, 236
FaiI YATR 5 cut(s) 97, 234, 324, 336, 351
FaqI GGGAC 1 cut(s) 104
FatI CATG 2 cut(s) 95, 232
FauI CCCGC 1 cut(s) 191
Fnu4HI GCNGC 3 cut(s) 309, 354, 378
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 2 cut(s) 165, 204
Fsp4HI GCNGC 3 cut(s) 309, 354, 378
GluI GCNGC 3 cut(s) 309, 354, 378
HaeIII GGCC 3 cut(s) 155, 185, 202
Hin1II CATG 2 cut(s) 99, 236
HphI GGTGA 1 cut(s) 48
Hpy166II GTNNAC 1 cut(s) 431
Hpy188I TCNGA 2 cut(s) 167, 280
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 431
HpyAV CCTTC 3 cut(s) 59, 188, 250
HpyCH4V TGCA 6 cut(s) 35, 136, 143, 180, 291, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 446
Hsp92II CATG 2 cut(s) 99, 236
Kzo9I GATC 3 cut(s) 130, 211, 362
LmnI GCTCC 1 cut(s) 361
LpnPI CCDG 8 cut(s) 54, 75, 99, 169, 217, 228, 345, 372
Lsp1109I GCAGC 3 cut(s) 295, 340, 389
MaeIII GTNAC 4 cut(s) 43, 54, 206, 313
MalI GATC 3 cut(s) 132, 213, 364
MboI GATC 3 cut(s) 130, 211, 362
MboII GAAGA 1 cut(s) 29
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 3 cut(s) 165, 204, 305
MluCI AATT 2 cut(s) 274, 292
MnlI CCTC 1 cut(s) 393
Mph1103I ATGCAT 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 360
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 3 cut(s) 130, 211, 362
NlaIII CATG 2 cut(s) 99, 236
NlaIV GGNNCC 1 cut(s) 202
NmuCI GTSAC 3 cut(s) 43, 54, 313
NsiI ATGCAT 1 cut(s) 145
PctI GAATGC 1 cut(s) 145
PflMI CCANNNNNTGG 1 cut(s) 335
PfoI TCCNGGA 1 cut(s) 358
PkrI GCNGC 3 cut(s) 310, 355, 379
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 202
PspOMI GGGCCC 1 cut(s) 200
PspPI GGNCC 3 cut(s) 153, 200, 201
PstI CTGCAG 2 cut(s) 138, 379
PsuI RGATCY 1 cut(s) 362
SatI GCNGC 3 cut(s) 309, 354, 378
Sau3AI GATC 3 cut(s) 130, 211, 362
Sau96I GGNCC 3 cut(s) 153, 200, 201
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 3 cut(s) 165, 204, 305
SetI ASST 4 cut(s) 257, 385, 398, 455
SfcI CTRYAG 3 cut(s) 134, 366, 375
Sse9I AATT 2 cut(s) 274, 292
SsiI CCGC 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 358
TasI AATT 2 cut(s) 274, 292
TscAI CASTG 2 cut(s) 48, 310
TseFI GTSAC 3 cut(s) 43, 54, 313
TseI GCWGC 3 cut(s) 308, 353, 377
Tsp45I GTSAC 3 cut(s) 43, 54, 313
TspDTI ATGAA 1 cut(s) 70
TspRI CASTG 2 cut(s) 48, 310
Van91I CCANNNNNTGG 1 cut(s) 335
XapI RAATTY 1 cut(s) 274
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.