Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012407.1

Orthogroup ID

OG0005800

Physical Location & Seq

Genomic Coordinates Reverse (-)

449 .. 916

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012407.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgtcggaaatcagactccagaccaccagcttctcgtctccgtcgtctgcctttttcaacaaccaccatagccactaccaccacaccgactaccaccaccaccgttccgcttcaccgacacatatcaatctctacacctccagtactctatctctagcttttcgcttctccatcgagcactattccatctccccaaaccgatccatcaccacttccaagaagaacggccggatcgcggcggccaggaagatgcgtatgtgctcgccgacgaatcatccaagcttgtttcgctgcagatcttccatgatgaactcgctggttctaatcagtggagtcgagggggagtgggtgaagagagccttcacggctctattcgtccttctacgcaccagcagaggcagagaactgggtttctctatttttccgatcttagattctagcgagtcaactccaagtagccacgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.57

Weight (kDa)

10.2

Isoelectric Point (pI)

67.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05430 AT4G05430 AT4G05430
fragaria_vesca	FvH4_3g09670
malus_domestica	MD00G1109800.v1.1 MD05G1276200.v1.1
prunus_persica	Prupe.4G088100_v2.0.a1 Prupe.4G088100_v2.0.a1 Prupe.4G088100_v2.0.a1 Prupe.4G088100_v2.0.a1
pyrus_communis	pycom05g25720
rosa_chinensis	RchiOBHm_Chr1g0364551 RchiOBHm_Chr5g0015351
rosa_laevigata	RLG00000032194
rosa_multiflora	Rmu_sc0012407.1_g000001 Rmu_sc0012407.1_g000002 Rmu_sc0013747.1_g000001 Rmu_sc0014430.1_g000002 Rmu_sc0017755.1_g000006
rosa_roxburghii	Rroxscaffold_1G00061100
rosa_rugosa	Rorug05G0026800
rosa_samantha	Rh1AG325100 Rh5AG120300 Rh5BG119200 Rh5CG129700 Rh5DG118300
rosa_wichuraiana	Rw1G028820 Rw5G010400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	236
AciI	CCGC	3 cut(s)	108, 236, 239
AclWI	GGATC	2 cut(s)	195, 239
AcoI	YGGCCR	2 cut(s)	226, 240
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	3 cut(s)	30, 158, 282
AluI	AGCT	3 cut(s)	30, 158, 282
Alw21I	GWGCWC	2 cut(s)	180, 263
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	2 cut(s)	195, 239
AoxI	GGCC	2 cut(s)	226, 240
ApeKI	GCWGC	1 cut(s)	291
AsuHPI	GGTGA	3 cut(s)	105, 199, 361
BauI	CACGAG	1 cut(s)	461
Bbv12I	GWGCWC	2 cut(s)	180, 263
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	3 cut(s)	179, 194, 212
BceAI	ACGGC	2 cut(s)	241, 381
BciT130I	CCWGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	2 cut(s)	155, 438
BfmI	CTRYAG	1 cut(s)	292
BglI	GCCNNNNNGGC	1 cut(s)	365
BglII	AGATCT	1 cut(s)	296
BisI	GCNGC	3 cut(s)	237, 240, 292
BlsI	GCNGC	3 cut(s)	238, 241, 293
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	244
BmrI	ACTGGG	1 cut(s)	416
BmsI	GCATC	1 cut(s)	240
BmuI	ACTGGG	1 cut(s)	416
BpmI	CTGGAG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	2 cut(s)	141, 411
BseBI	CCWGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseNI	ACTGG	2 cut(s)	141, 411
BseX3I	CGGCCG	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	236
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	2 cut(s)	228, 242
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	2 cut(s)	180, 263
BsiSI	CCGG	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	42
BsmBI	CGTCTC	1 cut(s)	42
BsnI	GGCC	2 cut(s)	228, 242
Bsp1286I	GDGCHC	2 cut(s)	180, 263
Bsp143I	GATC	4 cut(s)	200, 231, 296, 426
BspACI	CCGC	3 cut(s)	108, 236, 239
BspANI	GGCC	2 cut(s)	228, 242
BspFNI	CGCG	1 cut(s)	236
BspMAI	CTGCAG	1 cut(s)	296
BspPI	GGATC	2 cut(s)	195, 239
BsrI	ACTGG	2 cut(s)	141, 411
BssMI	GATC	4 cut(s)	200, 231, 296, 426
BssSI	CACGAG	1 cut(s)	461
Bst2BI	CACGAG	1 cut(s)	461
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	1 cut(s)	430
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	236
BstKTI	GATC	4 cut(s)	203, 234, 299, 429
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	4 cut(s)	200, 231, 296, 426
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	2 cut(s)	288, 365
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	242
BstSFI	CTRYAG	1 cut(s)	292
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BstZI	CGGCCG	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	228, 242
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	1 cut(s)	304
CviJI	RGCY	9 cut(s)	30, 72, 158, 228, 242, 282, 359, 368, 459
CviKI_1	RGCY	9 cut(s)	30, 72, 158, 228, 242, 282, 359, 368, 459
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	430
DpnI	GATC	4 cut(s)	202, 233, 298, 428
DpnII	GATC	4 cut(s)	200, 231, 296, 426
EaeI	YGGCCR	2 cut(s)	226, 240
EagI	CGGCCG	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
EclXI	CGGCCG	1 cut(s)	226
Eco52I	CGGCCG	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	242
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	1 cut(s)	307
FaiI	YATR	4 cut(s)	69, 123, 257, 305
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	1 cut(s)	303
Fnu4HI	GCNGC	3 cut(s)	237, 240, 292
FokI	GGATG	1 cut(s)	261
Fsp4HI	GCNGC	3 cut(s)	237, 240, 292
FspBI	CTAG	2 cut(s)	155, 438
GluI	GCNGC	3 cut(s)	237, 240, 292
GsuI	CTGGAG	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	228, 242
HapII	CCGG	1 cut(s)	229
Hin1II	CATG	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	5 cut(s)	15, 271, 333, 434, 443
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	3 cut(s)	105, 199, 361
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188I	TCNGA	3 cut(s)	7, 14, 426
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	1 cut(s)	447
Hpy99I	CGWCG	2 cut(s)	46, 271
HpyAV	CCTTC	2 cut(s)	370, 389
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	288, 365
HpyF3I	CTNAG	1 cut(s)	430
Hsp92II	CATG	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	200, 231, 296, 426
LpnPI	CCDG	9 cut(s)	32, 40, 154, 229, 242, 256, 302, 392, 403
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	2 cut(s)	155, 438
MalI	GATC	4 cut(s)	202, 233, 298, 428
MboI	GATC	4 cut(s)	200, 231, 296, 426
MboII	GAAGA	4 cut(s)	232, 259, 291, 364
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	2 cut(s)	180, 263
MlyI	GAGTC	3 cut(s)	9, 342, 452
MnlI	CCTC	3 cut(s)	148, 331, 389
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	244
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	2 cut(s)	288, 365
NdeII	GATC	4 cut(s)	200, 231, 296, 426
NlaIII	CATG	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	271, 434
PkrI	GCNGC	3 cut(s)	238, 241, 293
PleI	GAGTC	3 cut(s)	9, 341, 451
PpsI	GAGTC	3 cut(s)	9, 341, 451
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PstI	CTGCAG	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	296
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SatI	GCNGC	3 cut(s)	237, 240, 292
Sau3AI	GATC	4 cut(s)	200, 231, 296, 426
ScaI	AGTACT	1 cut(s)	145
SchI	GAGTC	3 cut(s)	9, 342, 452
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	2 cut(s)	180, 263
SetI	ASST	4 cut(s)	32, 140, 160, 284
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	292
SsiI	CCGC	3 cut(s)	108, 236, 239
SspMI	CTAG	2 cut(s)	155, 438
StyD4I	CCNGG	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	2 cut(s)	174, 336
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	2 cut(s)	239, 242
TfiI	GAWTC	2 cut(s)	271, 434
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	1 cut(s)	291
TspDTI	ATGAA	1 cut(s)	323
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	334
XspI	CTAG	2 cut(s)	155, 438
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.