Rmu_sc0014430.1_g000002

glucan endo-1,3-beta-glucosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014430.1
OG0005800
Physical Location & Seq
Reverse (-)
3787 .. 4149
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014430.1_g000002.1.cds

Sequence Viewer

Length: 363 bp
atgggagttggtgtggaagagaaagtagatggtgcaataccagtgaccacattgtcaccaccagaagggaacacaacattccttgatggcacaacatggtgtgtggctcttgctggtgtcccccaagatgatctgcagaatgcattagattgggcctgtgggctcggaatggcagactgcaaggccatccaagaaggcgggccctgttacaatccagacactctcttatctcatgcttccttcgctttcaatagctactatcaacagaatgggaattctgatattgcttgcaattttgggggcactgctgctgtcactaaacataacccaagtaagttctgcatctctttaatttctccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

120

Amino Acids

12.53

Weight (kDa)

4.2

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AciI CCGC 1 cut(s) 198
AcsI RAATTY 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 65
AgsI TTSAA 1 cut(s) 250
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
AoxI GGCC 3 cut(s) 153, 183, 200
ApaI GGGCCC 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 274
AspS9I GGNCC 3 cut(s) 153, 200, 201
AsuHPI GGTGA 1 cut(s) 48
BaeGI GKGCMC 2 cut(s) 204, 305
BanII GRGCYC 2 cut(s) 165, 204
BbvI GCAGC 1 cut(s) 295
BccI CCATC 3 cut(s) 23, 80, 194
BfmI CTRYAG 1 cut(s) 134
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
BmgT120I GGNCC 3 cut(s) 153, 200, 201
BmiI GGNNCC 1 cut(s) 202
BmsI GCATC 1 cut(s) 351
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 41
BseSI GKGCMC 2 cut(s) 204, 305
BseXI GCAGC 1 cut(s) 295
BshFI GGCC 3 cut(s) 155, 185, 202
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 104
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 3 cut(s) 155, 185, 202
Bsp120I GGGCCC 1 cut(s) 200
Bsp1286I GDGCHC 3 cut(s) 165, 204, 305
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 1 cut(s) 198
BspANI GGCC 3 cut(s) 155, 185, 202
BspLI GGNNCC 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 138
BsrI ACTGG 1 cut(s) 41
BssMI GATC 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 200, 289
BstF5I GGATG 1 cut(s) 186
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstSFI CTRYAG 1 cut(s) 134
BstSLI GKGCMC 2 cut(s) 204, 305
BstV1I GCAGC 1 cut(s) 295
BsuRI GGCC 3 cut(s) 155, 185, 202
BtsCI GGATG 1 cut(s) 186
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 2 cut(s) 48, 303
Cac8I GCNNGC 2 cut(s) 200, 289
Cfr13I GGNCC 3 cut(s) 153, 200, 201
CviAII CATG 2 cut(s) 96, 233
CviJI RGCY 6 cut(s) 107, 155, 163, 185, 202, 255
CviKI_1 RGCY 6 cut(s) 107, 155, 163, 185, 202, 255
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco24I GRGCYC 2 cut(s) 165, 204
EcoO109I RGGNCCY 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 274
EcoT22I ATGCAT 1 cut(s) 145
EcoT38I GRGCYC 2 cut(s) 165, 204
FaeI CATG 2 cut(s) 99, 236
FaiI YATR 3 cut(s) 97, 234, 324
FaqI GGGAC 1 cut(s) 104
FatI CATG 2 cut(s) 95, 232
FauI CCCGC 1 cut(s) 191
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 2 cut(s) 165, 204
Fsp4HI GCNGC 1 cut(s) 309
GluI GCNGC 1 cut(s) 309
HaeIII GGCC 3 cut(s) 155, 185, 202
Hin1II CATG 2 cut(s) 99, 236
HphI GGTGA 1 cut(s) 48
Hpy188I TCNGA 2 cut(s) 167, 280
Hpy188III TCNNGA 1 cut(s) 215
HpyAV CCTTC 3 cut(s) 59, 188, 250
HpyCH4V TGCA 6 cut(s) 35, 136, 143, 180, 291, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
Hsp92II CATG 2 cut(s) 99, 236
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 6 cut(s) 54, 75, 99, 169, 217, 228
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 1 cut(s) 351
MaeIII GTNAC 4 cut(s) 43, 54, 206, 313
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 29
MhlI GDGCHC 3 cut(s) 165, 204, 305
MluCI AATT 3 cut(s) 274, 292, 351
Mph1103I ATGCAT 1 cut(s) 145
MseI TTAA 1 cut(s) 350
Mva1269I GAATGC 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 1 cut(s) 130
NlaIII CATG 2 cut(s) 99, 236
NlaIV GGNNCC 1 cut(s) 202
NmuCI GTSAC 3 cut(s) 43, 54, 313
NsiI ATGCAT 1 cut(s) 145
PctI GAATGC 1 cut(s) 145
PkrI GCNGC 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 202
PspOMI GGGCCC 1 cut(s) 200
PspPI GGNCC 3 cut(s) 153, 200, 201
PstI CTGCAG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 3 cut(s) 153, 200, 201
SduI GDGCHC 3 cut(s) 165, 204, 305
SetI ASST 1 cut(s) 257
SfaNI GCATC 1 cut(s) 351
SfcI CTRYAG 1 cut(s) 134
Sse9I AATT 3 cut(s) 274, 292, 351
SsiI CCGC 1 cut(s) 198
TasI AATT 3 cut(s) 274, 292, 351
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 2 cut(s) 48, 310
TseFI GTSAC 3 cut(s) 43, 54, 313
TseI GCWGC 1 cut(s) 308
Tsp45I GTSAC 3 cut(s) 43, 54, 313
TspRI CASTG 2 cut(s) 48, 310
XapI RAATTY 1 cut(s) 274
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.