Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005800

Physical Location & Seq

Genomic Coordinates Forward (+)

4325199 .. 4327916

Gene Structure 2718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G088100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAGAAAGAACATATGTGTTTTGGTTCTGCAGTGCTTGTTGCTACTGGGATGCTATCTGGTTTCGACAATGGAACTTGCGGTGGAAGAGAAGGCGGATGGAGCAATCCCAGTAACCACAATGTCACCACCAGAAGGGAACACAACATTCCTTGATGGCACAACATGGTGTGTGGCCCTTCCCGGGGTTTCCCAAGTTGATTTGCAGAATGCATTAGACTGGGCCTGTGGATTGGGAATGGCAAACTGCAAGGCAATCCAAGAAGGCGGAGCCTGTTATGAACCGGATACTCTCTTGTCTCATGCCTCCTTTGCTTTCAATGATTACTATCAACAGAATGGGAATTCTGATATAGCTTGCAATTTTGGAGGAACTGCTGCAGTCACCAAACATAACCCGAGTTATGGAAAATGTGTCTTTGCTGCAGCTGGATCAGTAGGCTCTGCAGCACCTCCATTGTACAAGCTTAATCCGAGATCTGTTTGGTGGCAACTTGCTTGCCTTTTATTGACTCTGTATCTAGGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

177

Amino Acids

18.69

Weight (kDa)

4.77

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05430 AT4G05430 AT4G05430
fragaria_vesca	FvH4_3g09670
malus_domestica	MD00G1109800.v1.1 MD05G1276200.v1.1
prunus_persica	Prupe.4G088100_v2.0.a1 Prupe.4G088100_v2.0.a1 Prupe.4G088100_v2.0.a1 Prupe.4G088100_v2.0.a1
pyrus_communis	pycom05g25720
rosa_chinensis	RchiOBHm_Chr1g0364551 RchiOBHm_Chr5g0015351
rosa_laevigata	RLG00000032194
rosa_multiflora	Rmu_sc0012407.1_g000001 Rmu_sc0012407.1_g000002 Rmu_sc0013747.1_g000001 Rmu_sc0014430.1_g000002 Rmu_sc0017755.1_g000006
rosa_roxburghii	Rroxscaffold_1G00061100
rosa_rugosa	Rorug05G0026800
rosa_samantha	Rh1AG325100 Rh5AG120300 Rh5BG119200 Rh5CG129700 Rh5DG118300
rosa_wichuraiana	Rw1G028820 Rw5G010400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	80, 95, 267
AclWI	GGATC	1 cut(s)	439
AcsI	RAATTY	1 cut(s)	343
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	4 cut(s)	134, 183, 184, 404
AgsI	TTSAA	1 cut(s)	319
AluBI	AGCT	4 cut(s)	356, 428, 466, 528
AluI	AGCT	4 cut(s)	356, 428, 466, 528
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	439
Ama87I	CYCGRG	2 cut(s)	182, 397
AoxI	GGCC	2 cut(s)	174, 222
ApeKI	GCWGC	4 cut(s)	377, 422, 425, 446
ApoI	RAATTY	1 cut(s)	343
AspS9I	GGNCC	2 cut(s)	175, 222
AsuC2I	CCSGG	2 cut(s)	183, 184
AsuHPI	GGTGA	2 cut(s)	117, 376
AvaI	CYCGRG	2 cut(s)	182, 397
BbvI	GCAGC	4 cut(s)	364, 409, 437, 458
BccI	CCATC	2 cut(s)	92, 149
BciVI	GTATCC	1 cut(s)	280
BcnI	CCSGG	2 cut(s)	183, 184
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	1 cut(s)	521
BfmI	CTRYAG	4 cut(s)	29, 378, 423, 444
BfuI	GTATCC	1 cut(s)	280
BglII	AGATCT	1 cut(s)	476
BisI	GCNGC	4 cut(s)	378, 423, 426, 447
BlsI	GCNGC	4 cut(s)	379, 424, 427, 448
Bme1390I	CCNGG	2 cut(s)	183, 184
BmeT110I	CYCGRG	2 cut(s)	182, 397
BmgT120I	GGNCC	2 cut(s)	175, 222
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	2 cut(s)	183, 184
BmrI	ACTGGG	3 cut(s)	56, 104, 229
BmsI	GCATC	1 cut(s)	41
BmuI	ACTGGG	3 cut(s)	56, 104, 229
BpuMI	CCSGG	2 cut(s)	183, 184
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	182, 183
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 183, 184, 404
Bse1I	ACTGG	3 cut(s)	51, 110, 224
Bse8I	GATNNNNATC	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	182, 183
BseGI	GGATG	2 cut(s)	56, 103
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	4 cut(s)	134, 183, 184, 404
BseNI	ACTGG	3 cut(s)	51, 110, 224
BseXI	GCAGC	4 cut(s)	364, 409, 437, 458
BshFI	GGCC	2 cut(s)	176, 224
BsiHKCI	CYCGRG	2 cut(s)	182, 397
BsiSI	CCGG	2 cut(s)	183, 284
BslI	CCNNNNNNNGG	4 cut(s)	134, 183, 184, 404
BsmAI	GTCTC	1 cut(s)	303
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	176, 224
BsoBI	CYCGRG	2 cut(s)	182, 397
Bsp1407I	TGTACA	1 cut(s)	459
Bsp143I	GATC	2 cut(s)	431, 476
BspACI	CCGC	3 cut(s)	80, 95, 267
BspANI	GGCC	2 cut(s)	176, 224
BspLI	GGNNCC	1 cut(s)	271
BspMAI	CTGCAG	4 cut(s)	33, 382, 427, 448
BspPI	GGATC	1 cut(s)	439
BsrGI	TGTACA	1 cut(s)	459
BsrI	ACTGG	3 cut(s)	51, 110, 224
BssECI	CCNNGG	2 cut(s)	182, 183
BssMI	GATC	2 cut(s)	431, 476
Bst6I	CTCTTC	1 cut(s)	81
BstAUI	TGTACA	1 cut(s)	459
BstC8I	GCNNGC	2 cut(s)	358, 499
BstF5I	GGATG	2 cut(s)	56, 103
BstKTI	GATC	2 cut(s)	434, 479
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	2 cut(s)	431, 476
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 311
BstSCI	CCNGG	2 cut(s)	181, 182
BstSFI	CTRYAG	4 cut(s)	29, 378, 423, 444
BstV1I	GCAGC	4 cut(s)	364, 409, 437, 458
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BsuI	GTATCC	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	176, 224
BtsCI	GGATG	2 cut(s)	56, 103
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	358, 499
Cfr13I	GGNCC	2 cut(s)	175, 222
Cfr9I	CCCGGG	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	460
CviAII	CATG	2 cut(s)	165, 302
CviJI	RGCY	8 cut(s)	176, 224, 272, 356, 428, 441, 466, 528
CviKI_1	RGCY	8 cut(s)	176, 224, 272, 356, 428, 441, 466, 528
CviQI	GTAC	1 cut(s)	460
DpnI	GATC	2 cut(s)	433, 478
DpnII	GATC	2 cut(s)	431, 476
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EciI	GGCGGA	2 cut(s)	110, 282
Eco88I	CYCGRG	2 cut(s)	182, 397
EcoRI	GAATTC	1 cut(s)	343
EcoT22I	ATGCAT	1 cut(s)	214
FaeI	CATG	2 cut(s)	168, 305
FaiI	YATR	8 cut(s)	14, 16, 166, 279, 303, 353, 393, 405
FatI	CATG	2 cut(s)	164, 301
FauNDI	CATATG	1 cut(s)	14
Fnu4HI	GCNGC	4 cut(s)	378, 423, 426, 447
FokI	GGATG	2 cut(s)	63, 110
Fsp4HI	GCNGC	4 cut(s)	378, 423, 426, 447
FspBI	CTAG	1 cut(s)	521
GluI	GCNGC	4 cut(s)	378, 423, 426, 447
HaeIII	GGCC	2 cut(s)	176, 224
HapII	CCGG	2 cut(s)	183, 284
Hin1II	CATG	2 cut(s)	168, 305
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	1 cut(s)	511
HpaII	CCGG	2 cut(s)	183, 284
HphI	GGTGA	2 cut(s)	117, 376
Hpy188I	TCNGA	2 cut(s)	349, 474
HpyAV	CCTTC	4 cut(s)	85, 128, 188, 257
HpyCH4V	TGCA	8 cut(s)	31, 205, 212, 249, 360, 380, 425, 446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 311
Hsp92II	CATG	2 cut(s)	168, 305
Kzo9I	GATC	2 cut(s)	431, 476
LmnI	GCTCC	2 cut(s)	101, 269
Lsp1109I	GCAGC	4 cut(s)	364, 409, 437, 458
LweI	GCATC	1 cut(s)	41
MaeI	CTAG	1 cut(s)	521
MaeIII	GTNAC	3 cut(s)	112, 123, 382
MalI	GATC	2 cut(s)	433, 478
MboI	GATC	2 cut(s)	431, 476
MboII	GAAGA	1 cut(s)	98
MflI	RGATCY	1 cut(s)	476
MluCI	AATT	2 cut(s)	343, 361
MlyI	GAGTC	1 cut(s)	505
MnlI	CCTC	3 cut(s)	316, 362, 462
Mph1103I	ATGCAT	1 cut(s)	214
MseI	TTAA	1 cut(s)	468
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	2 cut(s)	183, 284
MspR9I	CCNGG	2 cut(s)	183, 184
Mva1269I	GAATGC	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	101, 311
NciI	CCSGG	2 cut(s)	183, 184
NdeI	CATATG	1 cut(s)	14
NdeII	GATC	2 cut(s)	431, 476
NlaIII	CATG	2 cut(s)	168, 305
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	2 cut(s)	123, 382
NsiI	ATGCAT	1 cut(s)	214
PctI	GAATGC	1 cut(s)	214
PkrI	GCNGC	4 cut(s)	379, 424, 427, 448
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	2 cut(s)	175, 222
PstI	CTGCAG	4 cut(s)	33, 382, 427, 448
PsuI	RGATCY	1 cut(s)	476
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	4 cut(s)	378, 423, 426, 447
Sau3AI	GATC	2 cut(s)	431, 476
Sau96I	GGNCC	2 cut(s)	175, 222
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	2 cut(s)	183, 184
SetI	ASST	5 cut(s)	358, 430, 454, 468, 530
SfaNI	GCATC	1 cut(s)	41
SfcI	CTRYAG	4 cut(s)	29, 378, 423, 444
SmaI	CCCGGG	1 cut(s)	184
Sse9I	AATT	2 cut(s)	343, 361
SsiI	CCGC	3 cut(s)	80, 95, 267
SspMI	CTAG	1 cut(s)	521
StyD4I	CCNGG	2 cut(s)	181, 182
TaqI	TCGA	1 cut(s)	65
TasI	AATT	2 cut(s)	343, 361
TatI	WGTACW	1 cut(s)	459
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	1 cut(s)	38
TseFI	GTSAC	2 cut(s)	123, 382
TseI	GCWGC	4 cut(s)	377, 422, 425, 446
Tsp45I	GTSAC	2 cut(s)	123, 382
TspDTI	ATGAA	1 cut(s)	294
TspMI	CCCGGG	1 cut(s)	182
TspRI	CASTG	1 cut(s)	38
XapI	RAATTY	1 cut(s)	343
XmaI	CCCGGG	1 cut(s)	182
XspI	CTAG	1 cut(s)	521
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.