Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006029

Physical Location & Seq

Genomic Coordinates Reverse (-)

6794630 .. 6796398

Gene Structure 1769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAGACAGAGAAGAAAGTTTCTCTCCCAAGAATCTTACGAATCTCTGTTACTGATCCTTACGCAACAGATTCGTCAAGCGACGAAGAAGAAGAAGTTGATTTTGATGCATTATCTACAAAACGACGTCGTGTTAAGAAGTACGTGAAGGAAGTGGTGCTTGATTCGGTGGTTTCTGATAAAGAGAAGCCGATGAAGAAGAAGAGAAAGAAGCGCGTTGTTACTGTTCCAGTGGTTGTTACGACGGCGACGAGGAAGTTTCGTGGAGTGAGGCAAAGACCGTGGGGAAAATGGGCGGCGGAGATTAGAGATCCGAGTAGACGTGTTAGGGTTTGGTTAGGTACTTTTGACACGGCGGAGGAAGCTGCCATTGTTTACGATAACGCAGCTATTCAGCTACGTGGTCCTAACGCAGAGCTTAACTTCCCTCCTCCTCCGGTGACGGAGAATGTTGAAGAAGCTTCGACGGAGGTGAAAGGAGTTTCGGATTTTATCATTGGCGGTGGAGAATGTCTTCGTTCGCCGGTTTCTGTTCTCGAATCTCCGTTCTCCGGCGAGTCTACTGCGGTTAAAGAGGAGTTTGTCGGTGTATCGACGGCGGAGATTGTGGTTAAAAAGGAGCCGTCTTTTAACGGTTCAGATTTCTCGGCGCCGTTGTTCTCGGACGACGACGTTTTTGGTTTCTCGACGTCGATGAGTGAAAGTTTCGGCGGCGATTTATTTGGAGATAATCTTTTTGCGGATATGAGTTTTGGATCCGGGTTTGGATTCGGGTCTGGGTCTGGATTCTCCAGCTGGCACGTTGAGGACCATTTTCAAGATATTGGGGATTTATTCGGGTCGGATCCTGTCTTAACTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

287

Amino Acids

31.54

Weight (kDa)

4.91

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	86 - 135	3.7e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11140 AT4G23750 AT4G23750
fragaria_vesca	FvH4_5g03920
malus_domestica	MD02G1220900.v1.1 MD06G1100500.v1.1 MD14G1120000.v1.1
prunus_persica	Prupe.5G114100_v2.0.a1
pyrus_communis	pycom06g09580
rosa_chinensis	RchiOBHm_Chr7g0195581
rosa_laevigata	RLG00000004107
rosa_multiflora	Rmu_co7992594.1_g000001 Rmu_sc0000487.1_g000064 Rmu_sc0004073.1_g000001 Rmu_ssc0000078.1_g000008 Rmu_ssc0000473.1_g000022
rosa_roxburghii	Rroxscaffold_3G00260330
rosa_rugosa	Rorug07G0024400
rosa_samantha	Rh4AG072300 Rh4AG073100 Rh4BG070300 Rh4CG078700 Rh7AG152100 Rh7BG153800 Rh7CG157300 Rh7DG153100
rosa_wichuraiana	Rw7G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	130, 692
AccB1I	GGYRCC	1 cut(s)	649
AccI	GTMKAC	2 cut(s)	319, 560
AccII	CGCG	1 cut(s)	216
AciI	CCGC	8 cut(s)	296, 299, 356, 501, 566, 599, 711, 740
AclWI	GGATC	6 cut(s)	50, 305, 750, 763, 839, 852
AcyI	GRCGYC	3 cut(s)	127, 650, 689
AfaI	GTAC	2 cut(s)	143, 343
AfiI	CCNNNNNNNGG	1 cut(s)	551
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	455, 818
AjiI	CACGTC	1 cut(s)	323
AluBI	AGCT	6 cut(s)	365, 389, 397, 418, 461, 795
AluI	AGCT	6 cut(s)	365, 389, 397, 418, 461, 795
AlwI	GGATC	6 cut(s)	50, 305, 750, 763, 839, 852
ApeKI	GCWGC	2 cut(s)	365, 386
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
Asp700I	GAANNNNTTC	1 cut(s)	513
AspLEI	GCGC	2 cut(s)	216, 652
AspS9I	GGNCC	2 cut(s)	404, 808
AsuC2I	CCSGG	1 cut(s)	760
AsuHPI	GGTGA	2 cut(s)	451, 484
AvaII	GGWCC	2 cut(s)	404, 808
BamHI	GGATCC	2 cut(s)	755, 844
BanI	GGYRCC	1 cut(s)	649
BbsI	GAAGAC	1 cut(s)	506
BbvI	GCAGC	2 cut(s)	352, 398
BceAI	ACGGC	5 cut(s)	261, 369, 607, 612, 637
BcgI	CGANNNNNNTGC	4 cut(s)	54, 88, 545, 579
BcnI	CCSGG	1 cut(s)	760
BfoI	RGCGCY	1 cut(s)	653
BisI	GCNGC	4 cut(s)	297, 366, 387, 712
BlsI	GCNGC	4 cut(s)	298, 367, 388, 713
Bme1390I	CCNGG	1 cut(s)	760
Bme18I	GGWCC	2 cut(s)	404, 808
BmgBI	CACGTC	1 cut(s)	323
BmgT120I	GGNCC	2 cut(s)	404, 808
BmiI	GGNNCC	4 cut(s)	621, 651, 757, 846
BmrFI	CCNGG	1 cut(s)	760
BmsI	GCATC	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	506
BpmI	CTGGAG	1 cut(s)	775
BpuMI	CCSGG	1 cut(s)	760
BsaAI	YACGTR	2 cut(s)	145, 401
BsaHI	GRCGYC	3 cut(s)	127, 650, 689
BsaJI	CCNNGG	1 cut(s)	281
BsaWI	WCCGGW	1 cut(s)	436
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse118I	RCCGGY	1 cut(s)	523
Bse1I	ACTGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	281
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	3 cut(s)	420, 423, 590
BseXI	GCAGC	2 cut(s)	352, 398
Bsh1236I	CGCG	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	649
BsiSI	CCGG	4 cut(s)	437, 524, 552, 759
BslI	CCNNNNNNNGG	1 cut(s)	551
Bsp143I	GATC	4 cut(s)	55, 310, 755, 844
BspACI	CCGC	8 cut(s)	296, 299, 356, 501, 566, 599, 711, 740
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	4 cut(s)	621, 651, 757, 846
BspPI	GGATC	6 cut(s)	50, 305, 750, 763, 839, 852
BspT107I	GGYRCC	1 cut(s)	649
BsrFI	RCCGGY	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	523
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	4 cut(s)	55, 310, 755, 844
BssNI	GRCGYC	3 cut(s)	127, 650, 689
Bst4CI	ACNGT	4 cut(s)	226, 282, 635, 859
Bst6I	CTCTTC	1 cut(s)	197
BstACI	GRCGYC	3 cut(s)	127, 650, 689
BstBAI	YACGTR	2 cut(s)	145, 401
BstC8I	GCNNGC	1 cut(s)	797
BstDSI	CCRYGG	1 cut(s)	281
BstFNI	CGCG	1 cut(s)	216
BstH2I	RGCGCY	1 cut(s)	653
BstHHI	GCGC	2 cut(s)	216, 652
BstKTI	GATC	4 cut(s)	58, 313, 758, 847
BstMBI	GATC	4 cut(s)	55, 310, 755, 844
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	758
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	352, 398
BstV2I	GAAGAC	1 cut(s)	506
BstX2I	RGATCY	3 cut(s)	310, 755, 844
BstYI	RGATCY	3 cut(s)	310, 755, 844
BtgI	CCRYGG	1 cut(s)	281
BtrI	CACGTC	1 cut(s)	323
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	797
CfoI	GCGC	2 cut(s)	216, 652
Cfr10I	RCCGGY	1 cut(s)	523
Cfr13I	GGNCC	2 cut(s)	404, 808
Csp6I	GTAC	2 cut(s)	142, 342
CspCI	CAANNNNNGTGG	2 cut(s)	263, 298
CviJI	RGCY	8 cut(s)	190, 365, 389, 397, 418, 461, 622, 795
CviKI_1	RGCY	8 cut(s)	190, 365, 389, 397, 418, 461, 622, 795
CviQI	GTAC	2 cut(s)	142, 342
DinI	GGCGCC	1 cut(s)	651
DpnI	GATC	4 cut(s)	57, 312, 757, 846
DpnII	GATC	4 cut(s)	55, 310, 755, 844
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
EciI	GGCGGA	3 cut(s)	314, 371, 614
Eco47I	GGWCC	2 cut(s)	404, 808
EcoT22I	ATGCAT	1 cut(s)	112
EgeI	GGCGCC	1 cut(s)	651
EheI	GGCGCC	1 cut(s)	651
FaiI	YATR	1 cut(s)	746
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FblI	GTMKAC	2 cut(s)	319, 560
Fnu4HI	GCNGC	4 cut(s)	297, 366, 387, 712
Fsp4HI	GCNGC	4 cut(s)	297, 366, 387, 712
GlaI	GCGC	2 cut(s)	215, 651
GluI	GCNGC	4 cut(s)	297, 366, 387, 712
GsuI	CTGGAG	1 cut(s)	775
HaeII	RGCGCY	1 cut(s)	653
HapII	CCGG	4 cut(s)	437, 524, 552, 759
HhaI	GCGC	2 cut(s)	216, 652
Hin1I	GRCGYC	3 cut(s)	127, 650, 689
Hin6I	GCGC	2 cut(s)	214, 650
HinP1I	GCGC	2 cut(s)	214, 650
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	8 cut(s)	33, 42, 71, 164, 539, 557, 768, 786
HpaII	CCGG	4 cut(s)	437, 524, 552, 759
HphI	GGTGA	2 cut(s)	451, 484
Hpy166II	GTNNAC	3 cut(s)	320, 376, 561
Hpy188I	TCNGA	6 cut(s)	178, 315, 487, 640, 664, 844
Hpy188III	TCNNGA	4 cut(s)	536, 685, 783, 818
Hpy8I	GTNNAC	3 cut(s)	320, 376, 561
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	4 cut(s)	226, 282, 635, 859
HpyCH4IV	ACGT	7 cut(s)	127, 144, 322, 400, 672, 689, 801
HpyCH4V	TGCA	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpySE526I	ACGT	7 cut(s)	127, 144, 322, 400, 672, 689, 801
Hsp92I	GRCGYC	3 cut(s)	127, 650, 689
HspAI	GCGC	2 cut(s)	214, 650
KasI	GGCGCC	1 cut(s)	649
Kzo9I	GATC	4 cut(s)	55, 310, 755, 844
LmnI	GCTCC	1 cut(s)	619
LpnPI	CCDG	9 cut(s)	243, 450, 537, 565, 762, 768, 772, 781, 805
Lsp1109I	GCAGC	2 cut(s)	352, 398
LweI	GCATC	1 cut(s)	97
MaeII	ACGT	7 cut(s)	127, 144, 322, 400, 672, 689, 801
MaeIII	GTNAC	4 cut(s)	49, 220, 238, 439
MalI	GATC	4 cut(s)	57, 312, 757, 846
MboI	GATC	4 cut(s)	55, 310, 755, 844
MboII	GAAGA	9 cut(s)	25, 98, 101, 104, 208, 211, 214, 467, 506
MflI	RGATCY	3 cut(s)	310, 755, 844
Mly113I	GGCGCC	1 cut(s)	650
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	822
MnlI	CCTC	9 cut(s)	246, 264, 352, 438, 441, 444, 463, 568, 799
Mph1103I	ATGCAT	1 cut(s)	112
MroXI	GAANNNNTTC	1 cut(s)	513
MseI	TTAA	7 cut(s)	135, 420, 570, 612, 630, 854, 862
MspA1I	CMGCKG	1 cut(s)	795
MspI	CCGG	4 cut(s)	437, 524, 552, 759
MspR9I	CCNGG	1 cut(s)	760
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	362
NarI	GGCGCC	1 cut(s)	650
NciI	CCSGG	1 cut(s)	760
NdeII	GATC	4 cut(s)	55, 310, 755, 844
NlaIV	GGNNCC	4 cut(s)	621, 651, 757, 846
NmeAIII	GCCGAG	1 cut(s)	626
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	513
PfeI	GAWTC	7 cut(s)	33, 42, 71, 164, 539, 768, 786
PkrI	GCNGC	4 cut(s)	298, 367, 388, 713
PleI	GAGTC	1 cut(s)	565
PluTI	GGCGCC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	565
Ppu21I	YACGTR	2 cut(s)	145, 401
PspN4I	GGNNCC	4 cut(s)	621, 651, 757, 846
PspPI	GGNCC	2 cut(s)	404, 808
PsuI	RGATCY	3 cut(s)	310, 755, 844
PvuII	CAGCTG	1 cut(s)	795
RsaI	GTAC	2 cut(s)	143, 343
RsaNI	GTAC	2 cut(s)	142, 342
SaqAI	TTAA	7 cut(s)	135, 420, 570, 612, 630, 854, 862
SatI	GCNGC	4 cut(s)	297, 366, 387, 712
Sau3AI	GATC	4 cut(s)	55, 310, 755, 844
Sau96I	GGNCC	2 cut(s)	404, 808
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	1 cut(s)	760
SfaNI	GCATC	1 cut(s)	97
SfoI	GGCGCC	1 cut(s)	651
SinI	GGWCC	2 cut(s)	404, 808
SsiI	CCGC	8 cut(s)	296, 299, 356, 501, 566, 599, 711, 740
SspDI	GGCGCC	1 cut(s)	649
StyD4I	CCNGG	1 cut(s)	758
TaaI	ACNGT	4 cut(s)	226, 282, 635, 859
TaiI	ACGT	7 cut(s)	130, 147, 325, 403, 675, 692, 804
TaqI	TCGA	5 cut(s)	464, 537, 593, 686, 692
TauI	GCSGC	2 cut(s)	299, 714
TfiI	GAWTC	7 cut(s)	33, 42, 71, 164, 539, 768, 786
Tru1I	TTAA	7 cut(s)	135, 420, 570, 612, 630, 854, 862
Tru9I	TTAA	7 cut(s)	135, 420, 570, 612, 630, 854, 862
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	2 cut(s)	365, 386
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	209
TspGWI	ACGGA	3 cut(s)	458, 482, 534
TspRI	CASTG	1 cut(s)	237
VpaK11BI	GGWCC	2 cut(s)	404, 808
XmiI	GTMKAC	2 cut(s)	319, 560
XmnI	GAANNNNTTC	1 cut(s)	513
ZraI	GACGTC	2 cut(s)	128, 690
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.