MD06G1100500.v1.1

ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
23698355 .. 23699401
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1100500.v1.1.491

Sequence Viewer

Length: 1047 bp
ATGAATCGTCCTGCTGTTAAGTACACGCAGCACCGGCGCCACACTACGATGGTGGCCAATTCGGCGGAAGCGGACGAGTTCGAGTCCGTGAGGCCGCGTGTTGTGCGGATATCGGTCACCGACGGAAACGCCACCGACTCCTCCAGCGACGACGAGGCCAAGGAGTCGTCTTTTTGTGGGACCCGCCACCGGGTCAAGAGGTTTGTTAATGAGATTACCATCGAGTCCTGCTCAAACAGGGACACCGACTCTGCCGTTTGGAGGAGTCGGATGTCGAGGACTGGGAGGAAGCGGCCGTCCGGGAAATCCAAAGGTCCGGCGAGTGGTCGCCGGGATTTGAAGGCGGTTGCTGCTCCTGCAGGGAAGAAGTTCCGTGGCGTGAGGCAGAGGCCCTGGGGAAAATGGGCGGCGGAGATAAGAGATCCTCTGCGACGTGTACGGCTCTGGTTGGGAACGTTTGACACGGCCGAGGAGGCCGCTGTGGTGTACGACAACGCTGCCATTCAGCTGCGTGGACCCGACGCGCTCACCAACTTCGCTCCTCCTCCTCCGGCGATATCTCTACCTGACGTTAAGCCGGAAGTTAGCTCTGGCTTTTATTCCGGCGACGGGTCGCACAACCACCTTTGCTCTCCGACGTCAGTGTTGCGCTGTCCCTCGCCTTCCAACGAAGAAGCCGAGTCGCCGTGCCCGAAACAATCTCCGGAAGTCATCGAAGTCCGAAATGTCCGAGAGAACTCCTCCGTTTCGAAGAGCTTGTCCGAGTTTTCGGATTACACAAGTTTCGAAACGTTTATTCCGAACGACATATTTAACTTCGAAACCTCGATACCGGACTTCTTGGAGGAGACGAGTCTCCGAGACGATATCACCGATTTCGGAAATTTCGGCATTTCGAAAGAAGGAATGACCGATTTCGGAAACTTGGGTGACCTGTTTGTCGATTCGGTTCAGGACTTCGGATTCGGGTCCACGCCGTGGTGTACGGAGGACTATTTCCAAGACATCGGCGACCTGTTTAGTTCCGATCCTCTGGTTGCGCTATGA

Protein Analysis

349

Amino Acids

38.57

Weight (kDa)

5.26

Isoelectric Point (pI)

54.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 123 - 172 1.2e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 938
AatII GACGTC 1 cut(s) 641
AccB1I GGYRCC 1 cut(s) 36
AccB7I CCANNNNNTGG 1 cut(s) 978
AccII CGCG 2 cut(s) 97, 524
AccIII TCCGGA 1 cut(s) 703
AclI AACGTT 2 cut(s) 455, 791
AclWI GGATC 2 cut(s) 416, 1022
AcoI YGGCCR 3 cut(s) 54, 293, 465
AcsI RAATTY 1 cut(s) 883
AcyI GRCGYC 2 cut(s) 37, 638
AdeI CACNNNGTG 1 cut(s) 978
AfaI GTAC 4 cut(s) 23, 438, 488, 985
AfiI CCNNNNNNNGG 6 cut(s) 189, 190, 261, 323, 609, 978
AflIII ACRYGT 1 cut(s) 433
AgsI TTSAA 1 cut(s) 340
AjiI CACGTC 1 cut(s) 434
AjnI CCWGG 1 cut(s) 392
AluBI AGCT 3 cut(s) 508, 588, 756
AluI AGCT 3 cut(s) 508, 588, 756
Alw26I GTCTC 3 cut(s) 842, 855, 860
AlwI GGATC 2 cut(s) 416, 1022
Aor13HI TCCGGA 1 cut(s) 703
AoxI GGCC 7 cut(s) 54, 92, 156, 293, 389, 465, 474
ApeKI GCWGC 4 cut(s) 28, 350, 497, 508
ApoI RAATTY 1 cut(s) 883
ArsI GACNNNNNNTTYG 4 cut(s) 743, 775, 947, 979
Asp700I GAANNNNTTC 1 cut(s) 368
AspLEI GCGC 4 cut(s) 39, 526, 651, 1042
AspS9I GGNCC 5 cut(s) 180, 314, 390, 515, 969
AsuC2I CCSGG 3 cut(s) 191, 301, 332
AsuHPI GGTGA 4 cut(s) 109, 520, 862, 941
AsuII TTCGAA 4 cut(s) 749, 786, 819, 896
AvaII GGWCC 4 cut(s) 180, 314, 515, 969
BaeGI GKGCMC 1 cut(s) 692
BalI TGGCCA 1 cut(s) 56
BanI GGYRCC 1 cut(s) 36
BbvI GCAGC 4 cut(s) 40, 337, 484, 495
BccI CCATC 2 cut(s) 43, 227
BceAI ACGGC 6 cut(s) 239, 280, 455, 480, 670, 961
BcgI CGANNNNNNTGC 2 cut(s) 479, 513
BciT130I CCWGG 1 cut(s) 394
BcnI CCSGG 3 cut(s) 191, 301, 332
BcoDI GTCTC 3 cut(s) 842, 855, 860
BfmI CTRYAG 1 cut(s) 357
BfoI RGCGCY 1 cut(s) 40
BglI GCCNNNNNGGC 2 cut(s) 62, 473
BisI GCNGC 8 cut(s) 29, 95, 293, 351, 408, 477, 498, 509
BlsI GCNGC 8 cut(s) 30, 96, 294, 352, 409, 478, 499, 510
Bme1390I CCNGG 4 cut(s) 191, 301, 332, 394
Bme18I GGWCC 4 cut(s) 180, 314, 515, 969
BmgBI CACGTC 1 cut(s) 434
BmgT120I GGNCC 5 cut(s) 180, 314, 390, 515, 969
BmiI GGNNCC 5 cut(s) 38, 181, 182, 517, 970
BmrFI CCNGG 4 cut(s) 191, 301, 332, 394
BmrI ACTGGG 1 cut(s) 291
BmuI ACTGGG 1 cut(s) 291
BplI GAGNNNNNCTC 4 cut(s) 215, 247, 725, 757
BpmI CTGGAG 1 cut(s) 127
Bpu14I TTCGAA 4 cut(s) 749, 786, 819, 896
BpuMI CCSGG 3 cut(s) 191, 301, 332
BsaBI GATNNNNATC 1 cut(s) 218
BsaHI GRCGYC 2 cut(s) 37, 638
BsaJI CCNNGG 6 cut(s) 159, 373, 392, 393, 468, 977
BsaWI WCCGGW 2 cut(s) 703, 832
Bsc4I CCNNNNNNNGG 6 cut(s) 189, 190, 261, 323, 609, 978
Bse118I RCCGGY 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 286
Bse8I GATNNNNATC 1 cut(s) 218
BseAI TCCGGA 1 cut(s) 703
BseBI CCWGG 1 cut(s) 394
BseDI CCNNGG 6 cut(s) 159, 373, 392, 393, 468, 977
BseGI GGATG 1 cut(s) 276
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 6 cut(s) 189, 190, 261, 323, 609, 978
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 8 cut(s) 130, 277, 485, 531, 534, 537, 730, 860
BseSI GKGCMC 1 cut(s) 692
BseX3I CGGCCG 2 cut(s) 293, 465
BseXI GCAGC 4 cut(s) 40, 337, 484, 495
Bsh1236I CGCG 2 cut(s) 97, 524
Bsh1285I CGRYCG 2 cut(s) 296, 468
BshFI GGCC 7 cut(s) 56, 94, 158, 295, 391, 467, 476
BshNI GGYRCC 1 cut(s) 36
BsiEI CGRYCG 2 cut(s) 296, 468
BslFI GGGAC 3 cut(s) 193, 254, 639
BslI CCNNNNNNNGG 6 cut(s) 189, 190, 261, 323, 609, 978
BsmAI GTCTC 3 cut(s) 842, 855, 860
BsmBI CGTCTC 2 cut(s) 842, 855
BsmFI GGGAC 3 cut(s) 193, 254, 639
BsnI GGCC 7 cut(s) 56, 94, 158, 295, 391, 467, 476
Bsp119I TTCGAA 4 cut(s) 749, 786, 819, 896
Bsp1286I GDGCHC 1 cut(s) 692
Bsp13I TCCGGA 1 cut(s) 703
Bsp143I GATC 2 cut(s) 421, 1027
BspANI GGCC 7 cut(s) 56, 94, 158, 295, 391, 467, 476
BspEI TCCGGA 1 cut(s) 703
BspFNI CGCG 2 cut(s) 97, 524
BspLI GGNNCC 5 cut(s) 38, 181, 182, 517, 970
BspMAI CTGCAG 1 cut(s) 361
BspPI GGATC 2 cut(s) 416, 1022
BspQI GCTCTTC 1 cut(s) 746
BspT104I TTCGAA 4 cut(s) 749, 786, 819, 896
BspT107I GGYRCC 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 33
BsrI ACTGG 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 33
BssECI CCNNGG 6 cut(s) 159, 373, 392, 393, 468, 977
BssMI GATC 2 cut(s) 421, 1027
BssNI GRCGYC 2 cut(s) 37, 638
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 394
Bst6I CTCTTC 1 cut(s) 746
BstACI GRCGYC 2 cut(s) 37, 638
BstBI TTCGAA 4 cut(s) 749, 786, 819, 896
BstDSI CCRYGG 2 cut(s) 373, 977
BstEII GGTNACC 2 cut(s) 115, 929
BstF5I GGATG 1 cut(s) 276
BstFNI CGCG 2 cut(s) 97, 524
BstH2I RGCGCY 1 cut(s) 40
BstHHI GCGC 4 cut(s) 39, 526, 651, 1042
BstKTI GATC 2 cut(s) 424, 1030
BstMAI GTCTC 3 cut(s) 842, 855, 860
BstMBI GATC 2 cut(s) 421, 1027
BstMCI CGRYCG 2 cut(s) 296, 468
BstMWI GCNNNNNNNGC 6 cut(s) 34, 62, 103, 350, 356, 473
BstNI CCWGG 1 cut(s) 394
BstPI GGTNACC 2 cut(s) 115, 929
BstSCI CCNGG 4 cut(s) 189, 299, 330, 392
BstSFI CTRYAG 1 cut(s) 357
BstSLI GKGCMC 1 cut(s) 692
BstUI CGCG 2 cut(s) 97, 524
BstV1I GCAGC 4 cut(s) 40, 337, 484, 495
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BstZI CGGCCG 2 cut(s) 293, 465
BsuRI GGCC 7 cut(s) 56, 94, 158, 295, 391, 467, 476
BtgI CCRYGG 2 cut(s) 373, 977
BtrI CACGTC 1 cut(s) 434
BtsCI GGATG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 648
CfoI GCGC 4 cut(s) 39, 526, 651, 1042
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 5 cut(s) 180, 314, 390, 515, 969
CseI GACGC 1 cut(s) 530
Csp6I GTAC 4 cut(s) 22, 437, 487, 984
CviQI GTAC 4 cut(s) 22, 437, 487, 984
DinI GGCGCC 1 cut(s) 38
DpnI GATC 2 cut(s) 423, 1029
DpnII GATC 2 cut(s) 421, 1027
DraIII CACNNNGTG 1 cut(s) 978
DrdI GACNNNNNNGTC 1 cut(s) 938
DseDI GACNNNNNNGTC 1 cut(s) 938
EaeI YGGCCR 3 cut(s) 54, 293, 465
EagI CGGCCG 2 cut(s) 293, 465
Eam1104I CTCTTC 1 cut(s) 746
EarI CTCTTC 1 cut(s) 746
EciI GGCGGA 2 cut(s) 80, 425
EclXI CGGCCG 2 cut(s) 293, 465
Eco130I CCWWGG 1 cut(s) 159
Eco32I GATATC 3 cut(s) 111, 558, 868
Eco47I GGWCC 4 cut(s) 180, 314, 515, 969
Eco52I CGGCCG 2 cut(s) 293, 465
Eco91I GGTNACC 2 cut(s) 115, 929
EcoO109I RGGNCCY 2 cut(s) 180, 390
EcoO65I GGTNACC 2 cut(s) 115, 929
EcoRII CCWGG 1 cut(s) 392
EcoRV GATATC 3 cut(s) 111, 558, 868
EcoT14I CCWWGG 1 cut(s) 159
EgeI GGCGCC 1 cut(s) 38
EheI GGCGCC 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 159
Esp3I CGTCTC 2 cut(s) 842, 855
FaiI YATR 2 cut(s) 809, 1045
FaqI GGGAC 3 cut(s) 193, 254, 639
FauI CCCGC 1 cut(s) 191
Fnu4HI GCNGC 8 cut(s) 29, 95, 293, 351, 408, 477, 498, 509
FokI GGATG 1 cut(s) 283
Fsp4HI GCNGC 8 cut(s) 29, 95, 293, 351, 408, 477, 498, 509
GlaI GCGC 4 cut(s) 38, 525, 650, 1041
GluI GCNGC 8 cut(s) 29, 95, 293, 351, 408, 477, 498, 509
GsuI CTGGAG 1 cut(s) 127
HaeII RGCGCY 1 cut(s) 40
HaeIII GGCC 7 cut(s) 56, 94, 158, 295, 391, 467, 476
HgaI GACGC 1 cut(s) 530
HhaI GCGC 4 cut(s) 39, 526, 651, 1042
Hin1I GRCGYC 2 cut(s) 37, 638
Hin6I GCGC 4 cut(s) 37, 524, 649, 1040
HinP1I GCGC 4 cut(s) 37, 524, 649, 1040
HphI GGTGA 4 cut(s) 109, 520, 862, 941
Hpy166II GTNNAC 6 cut(s) 24, 437, 487, 515, 972, 984
Hpy188III TCNNGA 3 cut(s) 196, 704, 953
Hpy8I GTNNAC 6 cut(s) 24, 437, 487, 515, 972, 984
Hpy99I CGWCG 7 cut(s) 125, 152, 155, 435, 524, 611, 640
HpyAV CCTTC 3 cut(s) 334, 672, 896
HpyCH4IV ACGT 5 cut(s) 433, 455, 570, 638, 791
HpyCH4V TGCA 1 cut(s) 359
HpyF10VI GCNNNNNNNGC 6 cut(s) 34, 62, 103, 350, 356, 473
HpySE526I ACGT 5 cut(s) 433, 455, 570, 638, 791
Hsp92I GRCGYC 2 cut(s) 37, 638
HspAI GCGC 4 cut(s) 37, 524, 649, 1040
KasI GGCGCC 1 cut(s) 36
KflI GGGWCCC 1 cut(s) 180
Kpn2I TCCGGA 1 cut(s) 703
Kzo9I GATC 2 cut(s) 421, 1027
LguI GCTCTTC 1 cut(s) 746
LmnI GCTCC 2 cut(s) 358, 544
Lsp1109I GCAGC 4 cut(s) 40, 337, 484, 495
MaeII ACGT 5 cut(s) 433, 455, 570, 638, 791
MaeIII GTNAC 2 cut(s) 115, 929
MalI GATC 2 cut(s) 423, 1029
MboI GATC 2 cut(s) 421, 1027
MboII GAAGA 3 cut(s) 376, 683, 763
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 1 cut(s) 692
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 2 cut(s) 58, 883
MluNI TGGCCA 1 cut(s) 56
Mly113I GGCGCC 1 cut(s) 37
MlyI GAGTC 8 cut(s) 92, 131, 173, 233, 242, 274, 689, 862
MmeI TCCRAC 3 cut(s) 248, 659, 690
Mox20I TGGCCA 1 cut(s) 56
MroI TCCGGA 1 cut(s) 703
MroXI GAANNNNTTC 1 cut(s) 368
MscI TGGCCA 1 cut(s) 56
MseI TTAA 4 cut(s) 18, 207, 573, 813
MslI CAYNNNNRTG 1 cut(s) 47
Msp20I TGGCCA 1 cut(s) 56
MspA1I CMGCKG 2 cut(s) 479, 508
MspR9I CCNGG 4 cut(s) 191, 301, 332, 394
MvaI CCWGG 1 cut(s) 394
MvnI CGCG 2 cut(s) 97, 524
MwoI GCNNNNNNNGC 6 cut(s) 34, 62, 103, 350, 356, 473
NarI GGCGCC 1 cut(s) 37
NciI CCSGG 3 cut(s) 191, 301, 332
NdeII GATC 2 cut(s) 421, 1027
NlaIV GGNNCC 5 cut(s) 38, 181, 182, 517, 970
NmeAIII GCCGAG 2 cut(s) 493, 703
NmuCI GTSAC 2 cut(s) 115, 929
NspV TTCGAA 4 cut(s) 749, 786, 819, 896
PasI CCCWGGG 1 cut(s) 393
PciSI GCTCTTC 1 cut(s) 746
PcsI WCGNNNNNNNCGW 4 cut(s) 675, 689, 797, 870
PdmI GAANNNNTTC 1 cut(s) 368
PfeI GAWTC 3 cut(s) 4, 944, 963
PflMI CCANNNNNTGG 1 cut(s) 978
PfoI TCCNGGA 1 cut(s) 299
PkrI GCNGC 8 cut(s) 30, 96, 294, 352, 409, 478, 499, 510
PleI GAGTC 8 cut(s) 91, 131, 172, 232, 242, 273, 688, 861
PluTI GGCGCC 1 cut(s) 40
PpsI GAGTC 8 cut(s) 91, 131, 172, 232, 242, 273, 688, 861
PpuMI RGGWCCY 1 cut(s) 180
Psp1406I AACGTT 2 cut(s) 455, 791
Psp5II RGGWCCY 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 392
PspEI GGTNACC 2 cut(s) 115, 929
PspGI CCWGG 1 cut(s) 392
PspN4I GGNNCC 5 cut(s) 38, 181, 182, 517, 970
PspPI GGNCC 5 cut(s) 180, 314, 390, 515, 969
PspPPI RGGWCCY 1 cut(s) 180
PstI CTGCAG 1 cut(s) 361
PsuI RGATCY 1 cut(s) 421
PvuII CAGCTG 1 cut(s) 508
RsaI GTAC 4 cut(s) 23, 438, 488, 985
RsaNI GTAC 4 cut(s) 22, 437, 487, 984
RseI CAYNNNNRTG 1 cut(s) 47
SapI GCTCTTC 1 cut(s) 746
SaqAI TTAA 4 cut(s) 18, 207, 573, 813
SatI GCNGC 8 cut(s) 29, 95, 293, 351, 408, 477, 498, 509
Sau3AI GATC 2 cut(s) 421, 1027
Sau96I GGNCC 5 cut(s) 180, 314, 390, 515, 969
SbfI CCTGCAGG 1 cut(s) 361
SchI GAGTC 8 cut(s) 92, 131, 173, 233, 242, 274, 689, 862
ScrFI CCNGG 4 cut(s) 191, 301, 332, 394
SdaI CCTGCAGG 1 cut(s) 361
SduI GDGCHC 1 cut(s) 692
SfcI CTRYAG 1 cut(s) 357
SfiI GGCCNNNNNGGCC 1 cut(s) 473
SfoI GGCGCC 1 cut(s) 38
SfuI TTCGAA 4 cut(s) 749, 786, 819, 896
SgrAI CRCCGGYG 1 cut(s) 33
SinI GGWCC 4 cut(s) 180, 314, 515, 969
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse8387I CCTGCAGG 1 cut(s) 361
Sse9I AATT 2 cut(s) 58, 883
SspDI GGCGCC 1 cut(s) 36
StyD4I CCNGG 4 cut(s) 189, 299, 330, 392
StyI CCWWGG 1 cut(s) 159
TaiI ACGT 5 cut(s) 436, 458, 573, 641, 794
TaqII GACCGA 2 cut(s) 103, 926
TasI AATT 2 cut(s) 58, 883
TatI WGTACW 1 cut(s) 21
TauI GCSGC 4 cut(s) 97, 295, 410, 479
TfiI GAWTC 3 cut(s) 4, 944, 963
Tru1I TTAA 4 cut(s) 18, 207, 573, 813
Tru9I TTAA 4 cut(s) 18, 207, 573, 813
TscAI CASTG 1 cut(s) 648
TseFI GTSAC 2 cut(s) 115, 929
TseI GCWGC 4 cut(s) 28, 350, 497, 508
Tsp45I GTSAC 2 cut(s) 115, 929
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 5 cut(s) 76, 138, 362, 733, 1001
TspRI CASTG 1 cut(s) 648
Van91I CCANNNNNTGG 1 cut(s) 978
VpaK11BI GGWCC 4 cut(s) 180, 314, 515, 969
XapI RAATTY 1 cut(s) 883
XmnI GAANNNNTTC 1 cut(s) 368
ZraI GACGTC 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.