Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000487.1

Orthogroup ID

OG0006029

Physical Location & Seq

Genomic Coordinates Forward (+)

270622 .. 272574

Gene Structure 1953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000487.1_g000064.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgggtgcatggcagacggtcgtgacaggttgtatggttgggtttcacaccccatttggattatggatccgcggttggatccgattggatctcattacaaattcattggagattggttgtggcttggaatcagatcttgcagcaagttcgttgacccttgatggtgggattggggaaggcgacatagggagtttcggaactggtgttgatcttcaccatggaattgcgctctcgagttttaggttgtggtggtggggggatgacatatactggttctctgtcgacaatggggttgtccaacgacagtcgagtcctaaagcggcagcgagttccggtctatgcaccttgagtgccttgtcaactctatgtaggcagcgaattccttacattgcagtcaagtactcgcagcaccggaatcacaccaagctcgtctctaattccgaagctgaggcggtgcggcccaggattgtacagatttcagtcactgacgacaattccaccgattcctttagagacgacaagccggagtctttcttcagctgcccgagagtgaataagtatgtgaatgagatttcgattgagtcgtgttcgagggaggccgaggaggtggcggcggtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

206

Amino Acids

22.59

Weight (kDa)

5.17

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11140 AT4G23750 AT4G23750
fragaria_vesca	FvH4_5g03920
malus_domestica	MD02G1220900.v1.1 MD06G1100500.v1.1 MD14G1120000.v1.1
prunus_persica	Prupe.5G114100_v2.0.a1
pyrus_communis	pycom06g09580
rosa_chinensis	RchiOBHm_Chr7g0195581
rosa_laevigata	RLG00000004107
rosa_multiflora	Rmu_co7992594.1_g000001 Rmu_sc0000487.1_g000064 Rmu_sc0004073.1_g000001 Rmu_ssc0000078.1_g000008 Rmu_ssc0000473.1_g000022
rosa_roxburghii	Rroxscaffold_3G00260330
rosa_rugosa	Rorug07G0024400
rosa_samantha	Rh4AG072300 Rh4AG073100 Rh4BG070300 Rh4CG078700 Rh7AG152100 Rh7BG153800 Rh7CG157300 Rh7DG153100
rosa_wichuraiana	Rw7G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	282
AccII	CGCG	1 cut(s)	72
AciI	CCGC	7 cut(s)	70, 72, 320, 452, 457, 611, 614
AclWI	GGATC	5 cut(s)	61, 73, 74, 86, 96
AcsI	RAATTY	2 cut(s)	100, 378
AcuI	CTGAAG	1 cut(s)	520
AfaI	GTAC	2 cut(s)	401, 471
AjnI	CCWGG	1 cut(s)	461
AluBI	AGCT	3 cut(s)	427, 446, 540
AluI	AGCT	3 cut(s)	427, 446, 540
Alw26I	GTCTC	2 cut(s)	436, 507
AlwI	GGATC	5 cut(s)	61, 73, 74, 86, 96
AlwNI	CAGNNNCTG	1 cut(s)	485
Ama87I	CYCGRG	2 cut(s)	232, 544
AoxI	GGCC	2 cut(s)	458, 597
ApeKI	GCWGC	5 cut(s)	140, 323, 373, 406, 540
ApoI	RAATTY	2 cut(s)	100, 378
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	459
AsuHPI	GGTGA	1 cut(s)	206
AvaI	CYCGRG	2 cut(s)	232, 544
BamHI	GGATCC	2 cut(s)	66, 78
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	5 cut(s)	152, 335, 385, 418, 527
BccI	CCATC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BciT130I	CCWGG	1 cut(s)	463
BcoDI	GTCTC	2 cut(s)	436, 507
BfaI	CTAG	1 cut(s)	619
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	8 cut(s)	141, 321, 324, 374, 407, 458, 541, 612
BlsI	GCNGC	8 cut(s)	142, 322, 325, 375, 408, 459, 542, 613
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	1 cut(s)	463
BmeT110I	CYCGRG	2 cut(s)	232, 544
BmgT120I	GGNCC	1 cut(s)	459
BmiI	GGNNCC	2 cut(s)	68, 80
BmrFI	CCNGG	1 cut(s)	463
Bpu10I	CCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	367
BsaJI	CCNNGG	4 cut(s)	70, 217, 461, 600
BsaWI	WCCGGW	2 cut(s)	332, 411
Bse1I	ACTGG	2 cut(s)	205, 275
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	463
BseDI	CCNNGG	4 cut(s)	70, 217, 461, 600
BseGI	GGATG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	2 cut(s)	205, 275
BseRI	GAGGAG	1 cut(s)	617
BseXI	GCAGC	5 cut(s)	152, 335, 385, 418, 527
Bsh1236I	CGCG	1 cut(s)	72
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	2 cut(s)	460, 599
BsiEI	CGRYCG	1 cut(s)	21
BsiHKCI	CYCGRG	2 cut(s)	232, 544
BsiSI	CCGG	3 cut(s)	333, 412, 524
BsmAI	GTCTC	2 cut(s)	436, 507
BsmBI	CGTCTC	2 cut(s)	436, 507
BsnI	GGCC	2 cut(s)	460, 599
BsoBI	CYCGRG	2 cut(s)	232, 544
Bsp1407I	TGTACA	1 cut(s)	469
Bsp143I	GATC	5 cut(s)	66, 78, 88, 133, 208
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	7 cut(s)	70, 72, 320, 452, 457, 611, 614
BspANI	GGCC	2 cut(s)	460, 599
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	68, 80
BspPI	GGATC	5 cut(s)	61, 73, 74, 86, 96
BsrDI	GCAATG	1 cut(s)	387
BsrGI	TGTACA	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	205, 275
BssECI	CCNNGG	4 cut(s)	70, 217, 461, 600
BssMI	GATC	5 cut(s)	66, 78, 88, 133, 208
BssT1I	CCWWGG	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	463
Bst4CI	ACNGT	2 cut(s)	19, 306
BstAUI	TGTACA	1 cut(s)	469
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	2 cut(s)	70, 217
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	5 cut(s)	69, 81, 91, 136, 211
BstMAI	GTCTC	2 cut(s)	436, 507
BstMBI	GATC	5 cut(s)	66, 78, 88, 133, 208
BstMCI	CGRYCG	1 cut(s)	21
BstNI	CCWGG	1 cut(s)	463
BstSCI	CCNGG	1 cut(s)	461
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	5 cut(s)	152, 335, 385, 418, 527
BstX2I	RGATCY	4 cut(s)	66, 78, 88, 133
BstYI	RGATCY	4 cut(s)	66, 78, 88, 133
BsuRI	GGCC	2 cut(s)	460, 599
BtgI	CCRYGG	2 cut(s)	70, 217
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	483
CaiI	CAGNNNCTG	1 cut(s)	485
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	459
Cfr42I	CCGCGG	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	400, 470
CviAII	CATG	2 cut(s)	9, 218
CviJI	RGCY	7 cut(s)	123, 427, 446, 460, 523, 540, 599
CviKI_1	RGCY	7 cut(s)	123, 427, 446, 460, 523, 540, 599
CviQI	GTAC	2 cut(s)	400, 470
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	5 cut(s)	68, 80, 90, 135, 210
DpnII	GATC	5 cut(s)	66, 78, 88, 133, 208
DrdI	GACNNNNNNGTC	1 cut(s)	309
DseDI	GACNNNNNNGTC	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	520
Eco88I	CYCGRG	2 cut(s)	232, 544
EcoRI	GAATTC	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	217
Esp3I	CGTCTC	2 cut(s)	436, 507
FaeI	CATG	2 cut(s)	12, 221
FatI	CATG	2 cut(s)	8, 217
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	8 cut(s)	141, 321, 324, 374, 407, 458, 541, 612
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	8 cut(s)	141, 321, 324, 374, 407, 458, 541, 612
FspBI	CTAG	1 cut(s)	619
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	8 cut(s)	141, 321, 324, 374, 407, 458, 541, 612
HaeIII	GGCC	2 cut(s)	460, 599
HapII	CCGG	3 cut(s)	333, 412, 524
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	2 cut(s)	12, 221
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HincII	GTYRAC	3 cut(s)	153, 283, 360
HindII	GTYRAC	3 cut(s)	153, 283, 360
HinfI	GANTC	6 cut(s)	128, 310, 415, 503, 527, 581
HpaII	CCGG	3 cut(s)	333, 412, 524
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	3 cut(s)	153, 283, 360
Hpy188I	TCNGA	4 cut(s)	83, 133, 197, 442
Hpy188III	TCNNGA	2 cut(s)	22, 232
Hpy8I	GTNNAC	3 cut(s)	153, 283, 360
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	2 cut(s)	19, 306
HpyCH4V	TGCA	4 cut(s)	8, 140, 342, 392
HpyF3I	CTNAG	1 cut(s)	447
Hsp92II	CATG	2 cut(s)	12, 221
HspAI	GCGC	1 cut(s)	227
KspI	CCGCGG	1 cut(s)	73
Kzo9I	GATC	5 cut(s)	66, 78, 88, 133, 208
LpnPI	CCDG	8 cut(s)	12, 186, 256, 346, 425, 448, 475, 537
Lsp1109I	GCAGC	5 cut(s)	152, 335, 385, 418, 527
MaeI	CTAG	1 cut(s)	619
MaeIII	GTNAC	2 cut(s)	22, 481
MalI	GATC	5 cut(s)	68, 80, 90, 135, 210
MboI	GATC	5 cut(s)	66, 78, 88, 133, 208
MboII	GAAGA	2 cut(s)	203, 526
MflI	RGATCY	4 cut(s)	66, 78, 88, 133
MluCI	AATT	5 cut(s)	100, 222, 378, 436, 493
MlyI	GAGTC	3 cut(s)	319, 536, 590
MmeI	TCCRAC	2 cut(s)	56, 322
MnlI	CCTC	5 cut(s)	442, 585, 589, 595, 598
MspA1I	CMGCKG	2 cut(s)	72, 540
MspI	CCGG	3 cut(s)	333, 412, 524
MspR9I	CCNGG	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	463
MvnI	CGCG	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	5 cut(s)	66, 78, 88, 133, 208
NlaIII	CATG	2 cut(s)	12, 221
NlaIV	GGNNCC	2 cut(s)	68, 80
NmuCI	GTSAC	2 cut(s)	22, 481
PaeR7I	CTCGAG	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	581
PfeI	GAWTC	3 cut(s)	128, 415, 503
PkrI	GCNGC	8 cut(s)	142, 322, 325, 375, 408, 459, 542, 613
PleI	GAGTC	3 cut(s)	318, 535, 589
PpsI	GAGTC	3 cut(s)	318, 535, 589
Psp6I	CCWGG	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	461
PspN4I	GGNNCC	2 cut(s)	68, 80
PspPI	GGNCC	1 cut(s)	459
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	4 cut(s)	66, 78, 88, 133
PvuII	CAGCTG	1 cut(s)	540
RsaI	GTAC	2 cut(s)	401, 471
RsaNI	GTAC	2 cut(s)	400, 470
SacII	CCGCGG	1 cut(s)	73
SalI	GTCGAC	1 cut(s)	281
SatI	GCNGC	8 cut(s)	141, 321, 324, 374, 407, 458, 541, 612
Sau3AI	GATC	5 cut(s)	66, 78, 88, 133, 208
Sau96I	GGNCC	1 cut(s)	459
ScaI	AGTACT	1 cut(s)	401
SchI	GAGTC	3 cut(s)	319, 536, 590
ScrFI	CCNGG	1 cut(s)	463
SetI	ASST	7 cut(s)	31, 245, 347, 429, 448, 542, 609
Sfr274I	CTCGAG	1 cut(s)	232
Sfr303I	CCGCGG	1 cut(s)	73
SgrBI	CCGCGG	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	232
SmlI	CTYRAG	2 cut(s)	232, 346
SmoI	CTYRAG	2 cut(s)	232, 346
Sse9I	AATT	5 cut(s)	100, 222, 378, 436, 493
SsiI	CCGC	7 cut(s)	70, 72, 320, 452, 457, 611, 614
SspMI	CTAG	1 cut(s)	619
StyD4I	CCNGG	1 cut(s)	461
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	19, 306
TaqI	TCGA	5 cut(s)	233, 282, 308, 575, 590
TasI	AATT	5 cut(s)	100, 222, 378, 436, 493
TatI	WGTACW	2 cut(s)	399, 469
TauI	GCSGC	3 cut(s)	323, 460, 614
TfiI	GAWTC	3 cut(s)	128, 415, 503
TscAI	CASTG	1 cut(s)	490
TseFI	GTSAC	2 cut(s)	22, 481
TseI	GCWGC	5 cut(s)	140, 323, 373, 406, 540
Tsp45I	GTSAC	2 cut(s)	22, 481
TspDTI	ATGAA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	490
XapI	RAATTY	2 cut(s)	100, 378
XcmI	CCANNNNNNNNNTGG	1 cut(s)	60
XhoI	CTCGAG	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	1 cut(s)	619
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.