Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006029

Physical Location & Seq

Genomic Coordinates Reverse (-)

1758363 .. 1762879

Gene Structure 4517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0024400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAGGAAAATATACAACTTGCCTCCACCGGAGGCCAAACACCTGTTTACCTATCTCCAACAGCTCGGGGTGAGGACCGATCTTGACGCTTATTCTCAGGAAAAGGCTATCGATGCTACCGACTCCTTCTTCAAACAAGTCAGTGATTGGCGTCAACCTACGATAATCGGTTCGATCGCCTTTACTATTCTGACGGAACTCCGTAAATCTAAGGAGATAAACGAGGAGATTATTAGAAAAGTTGTTCAGTTCTACCCAAAAGTCCCGGGTGCGGAGGAGGAGGAGGAGGATGAAATCGAGAAGTTTGCTGCGGCTTTAGGGTCGGAGGCCGAGGAGGAGACGGAGCAGGAGCCGGAGGTTGAGGATCTTCCTGATCCCGAGTGTGATGATTTTGATTTTGATTTAGTAGGAGACTGCATGGATAGGGCAAATGAGGCAGAACCGACAGAACAAGACAGGAAAGAGTTGTTGAAACAGTGCAGTGAAATGGGGTGCCGATTGAAACAAGGCGACGAACAGAAGATCCTCGATCTGATGATTCCTTTCTTGAGCAGCAATTTTACACGATTCTCATCTGATATAACTGATCGGACAATCTGCATCGAAACATTCATGGAACATGTCCAAGATTATATCAATCGTTCTAGCTTGCATCCTGAACGACTTGGGGACGGTGAACCGCGCCATTCAGACTGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

233

Amino Acids

26.91

Weight (kDa)

4.39

Isoelectric Point (pI)

63.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11140 AT4G23750 AT4G23750
fragaria_vesca	FvH4_5g03920
malus_domestica	MD02G1220900.v1.1 MD06G1100500.v1.1 MD14G1120000.v1.1
prunus_persica	Prupe.5G114100_v2.0.a1
pyrus_communis	pycom06g09580
rosa_chinensis	RchiOBHm_Chr7g0195581
rosa_laevigata	RLG00000004107
rosa_multiflora	Rmu_co7992594.1_g000001 Rmu_sc0000487.1_g000064 Rmu_sc0004073.1_g000001 Rmu_ssc0000078.1_g000008 Rmu_ssc0000473.1_g000022
rosa_roxburghii	Rroxscaffold_3G00260330
rosa_rugosa	Rorug07G0024400
rosa_samantha	Rh4AG072300 Rh4AG073100 Rh4BG070300 Rh4CG078700 Rh7AG152100 Rh7BG153800 Rh7CG157300 Rh7DG153100
rosa_wichuraiana	Rw7G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	492
AccII	CGCG	1 cut(s)	682
AciI	CCGC	3 cut(s)	272, 311, 680
AclWI	GGATC	3 cut(s)	368, 372, 517
AcyI	GRCGYC	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	619
AgsI	TTSAA	3 cut(s)	133, 472, 502
AloI	GAACNNNNNNTCC	2 cut(s)	507, 539
AluBI	AGCT	2 cut(s)	64, 648
AluI	AGCT	2 cut(s)	64, 648
Alw26I	GTCTC	2 cut(s)	332, 405
AlwI	GGATC	3 cut(s)	368, 372, 517
Ama87I	CYCGRG	3 cut(s)	65, 265, 377
AoxI	GGCC	2 cut(s)	33, 327
ApeKI	GCWGC	2 cut(s)	308, 552
AspLEI	GCGC	1 cut(s)	684
AspS9I	GGNCC	1 cut(s)	75
AsuC2I	CCSGG	2 cut(s)	266, 267
AsuHPI	GGTGA	2 cut(s)	82, 686
AvaI	CYCGRG	3 cut(s)	65, 265, 377
AvaII	GGWCC	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	295, 564
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BcnI	CCSGG	2 cut(s)	266, 267
BcoDI	GTCTC	2 cut(s)	332, 405
BfaI	CTAG	1 cut(s)	645
BisI	GCNGC	3 cut(s)	309, 312, 553
BlsI	GCNGC	3 cut(s)	310, 313, 554
Bme1390I	CCNGG	2 cut(s)	266, 267
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	3 cut(s)	65, 265, 377
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	351, 494
BmrFI	CCNGG	2 cut(s)	266, 267
BmsI	GCATC	3 cut(s)	103, 609, 661
BpuEI	CTTGAG	1 cut(s)	568
BpuMI	CCSGG	2 cut(s)	266, 267
Bsa29I	ATCGAT	1 cut(s)	111
BsaBI	GATNNNNATC	1 cut(s)	571
BsaHI	GRCGYC	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	265, 330
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse8I	GATNNNNATC	1 cut(s)	571
BseCI	ATCGAT	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	265, 330
BseGI	GGATG	2 cut(s)	295, 652
BseJI	GATNNNNATC	1 cut(s)	571
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	110
BseRI	GAGGAG	7 cut(s)	239, 290, 293, 296, 299, 347, 350
BseXI	GCAGC	2 cut(s)	295, 564
BsgI	GTGCAG	1 cut(s)	499
Bsh1236I	CGCG	1 cut(s)	682
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	35, 329
BshNI	GGYRCC	1 cut(s)	492
BshVI	ATCGAT	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	177
BsiHKCI	CYCGRG	3 cut(s)	65, 265, 377
BsiSI	CCGG	3 cut(s)	29, 266, 353
BslFI	GGGAC	2 cut(s)	248, 683
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	2 cut(s)	332, 405
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	2 cut(s)	248, 683
BsnI	GGCC	2 cut(s)	35, 329
BsoBI	CYCGRG	3 cut(s)	65, 265, 377
Bsp143I	GATC	7 cut(s)	79, 174, 364, 373, 522, 529, 586
BspACI	CCGC	3 cut(s)	272, 311, 680
BspANI	GGCC	2 cut(s)	35, 329
BspCNI	CTCAG	1 cut(s)	109
BspDI	ATCGAT	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	682
BspLI	GGNNCC	2 cut(s)	351, 494
BspPI	GGATC	3 cut(s)	368, 372, 517
BspT107I	GGYRCC	1 cut(s)	492
BssECI	CCNNGG	2 cut(s)	265, 330
BssMI	GATC	7 cut(s)	79, 174, 364, 373, 522, 529, 586
BssNI	GRCGYC	1 cut(s)	151
Bst4CI	ACNGT	3 cut(s)	477, 674, 695
BstACI	GRCGYC	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	650
BstDEI	CTNAG	2 cut(s)	96, 210
BstF5I	GGATG	2 cut(s)	295, 652
BstFNI	CGCG	1 cut(s)	682
BstHHI	GCGC	1 cut(s)	684
BstKTI	GATC	7 cut(s)	82, 177, 367, 376, 525, 532, 589
BstMAI	GTCTC	2 cut(s)	332, 405
BstMBI	GATC	7 cut(s)	79, 174, 364, 373, 522, 529, 586
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 434
BstNSI	RCATGY	1 cut(s)	623
BstSCI	CCNGG	2 cut(s)	264, 265
BstUI	CGCG	1 cut(s)	682
BstV1I	GCAGC	2 cut(s)	295, 564
BstX2I	RGATCY	2 cut(s)	364, 522
BstYI	RGATCY	2 cut(s)	364, 522
Bsu15I	ATCGAT	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	35, 329
BsuTUI	ATCGAT	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	295, 652
BtsI	GCAGTG	1 cut(s)	487
BtsIMutI	CAGTG	3 cut(s)	148, 482, 487
Cac8I	GCNNGC	1 cut(s)	650
CfoI	GCGC	1 cut(s)	684
Cfr13I	GGNCC	1 cut(s)	75
Cfr9I	CCCGGG	1 cut(s)	265
ClaI	ATCGAT	1 cut(s)	111
CseI	GACGC	2 cut(s)	95, 140
CviAII	CATG	3 cut(s)	418, 613, 620
CviJI	RGCY	7 cut(s)	35, 64, 107, 314, 329, 352, 648
CviKI_1	RGCY	7 cut(s)	35, 64, 107, 314, 329, 352, 648
DdeI	CTNAG	2 cut(s)	96, 210
DpnI	GATC	7 cut(s)	81, 176, 366, 375, 524, 531, 588
DpnII	GATC	7 cut(s)	79, 174, 364, 373, 522, 529, 586
Eco47I	GGWCC	1 cut(s)	75
Eco88I	CYCGRG	3 cut(s)	65, 265, 377
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	3 cut(s)	421, 616, 623
FaiI	YATR	6 cut(s)	13, 419, 581, 614, 621, 633
FaqI	GGGAC	2 cut(s)	248, 683
FatI	CATG	3 cut(s)	417, 612, 619
Fnu4HI	GCNGC	3 cut(s)	309, 312, 553
FokI	GGATG	2 cut(s)	302, 639
Fsp4HI	GCNGC	3 cut(s)	309, 312, 553
FspBI	CTAG	1 cut(s)	645
GlaI	GCGC	1 cut(s)	683
GluI	GCNGC	3 cut(s)	309, 312, 553
HaeIII	GGCC	2 cut(s)	35, 329
HapII	CCGG	3 cut(s)	29, 266, 353
HgaI	GACGC	2 cut(s)	95, 140
HhaI	GCGC	1 cut(s)	684
Hin1I	GRCGYC	1 cut(s)	151
Hin1II	CATG	3 cut(s)	421, 616, 623
Hin6I	GCGC	1 cut(s)	682
HinP1I	GCGC	1 cut(s)	682
HincII	GTYRAC	1 cut(s)	155
HindII	GTYRAC	1 cut(s)	155
HinfI	GANTC	3 cut(s)	122, 538, 567
HpaII	CCGG	3 cut(s)	29, 266, 353
HphI	GGTGA	2 cut(s)	82, 686
Hpy166II	GTNNAC	3 cut(s)	48, 155, 677
Hpy188I	TCNGA	6 cut(s)	192, 325, 534, 577, 591, 691
Hpy188III	TCNNGA	7 cut(s)	83, 98, 298, 371, 377, 547, 656
Hpy8I	GTNNAC	3 cut(s)	48, 155, 677
Hpy99I	CGWCG	1 cut(s)	515
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	3 cut(s)	477, 674, 695
HpyCH4V	TGCA	4 cut(s)	417, 480, 600, 652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 434
HpyF3I	CTNAG	2 cut(s)	96, 210
Hsp92I	GRCGYC	1 cut(s)	151
Hsp92II	CATG	3 cut(s)	421, 616, 623
HspAI	GCGC	1 cut(s)	682
Kzo9I	GATC	7 cut(s)	79, 174, 364, 373, 522, 529, 586
LmnI	GCTCC	2 cut(s)	343, 349
LpnPI	CCDG	9 cut(s)	42, 56, 83, 279, 332, 366, 384, 442, 669
Lsp1109I	GCAGC	2 cut(s)	295, 564
LweI	GCATC	3 cut(s)	103, 609, 661
MaeI	CTAG	1 cut(s)	645
MalI	GATC	7 cut(s)	81, 176, 366, 375, 524, 531, 588
MboI	GATC	7 cut(s)	79, 174, 364, 373, 522, 529, 586
MboII	GAAGA	3 cut(s)	121, 359, 532
MflI	RGATCY	2 cut(s)	364, 522
MluCI	AATT	1 cut(s)	556
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	82, 303
MspI	CCGG	3 cut(s)	29, 266, 353
MspR9I	CCNGG	2 cut(s)	266, 267
MvnI	CGCG	1 cut(s)	682
MwoI	GCNNNNNNNGC	2 cut(s)	113, 434
NciI	CCSGG	2 cut(s)	266, 267
NdeII	GATC	7 cut(s)	79, 174, 364, 373, 522, 529, 586
NlaIII	CATG	3 cut(s)	421, 616, 623
NlaIV	GGNNCC	2 cut(s)	351, 494
NmeAIII	GCCGAG	1 cut(s)	355
NspI	RCATGY	1 cut(s)	623
PciI	ACATGT	1 cut(s)	619
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	538, 567
PkrI	GCNGC	3 cut(s)	310, 313, 554
Ple19I	CGATCG	1 cut(s)	177
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PscI	ACATGT	1 cut(s)	619
PspN4I	GGNNCC	2 cut(s)	351, 494
PspPI	GGNCC	1 cut(s)	75
PsuI	RGATCY	2 cut(s)	364, 522
PvuI	CGATCG	1 cut(s)	177
SatI	GCNGC	3 cut(s)	309, 312, 553
Sau3AI	GATC	7 cut(s)	79, 174, 364, 373, 522, 529, 586
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	266, 267
SetI	ASST	6 cut(s)	45, 53, 66, 160, 360, 650
SfaNI	GCATC	3 cut(s)	103, 609, 661
SinI	GGWCC	1 cut(s)	75
SmaI	CCCGGG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	547
SmoI	CTYRAG	1 cut(s)	547
Sse9I	AATT	1 cut(s)	556
SsiI	CCGC	3 cut(s)	272, 311, 680
SspMI	CTAG	1 cut(s)	645
StyD4I	CCNGG	2 cut(s)	264, 265
TaaI	ACNGT	3 cut(s)	477, 674, 695
TaqI	TCGA	5 cut(s)	111, 173, 297, 528, 603
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	1 cut(s)	556
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	2 cut(s)	538, 567
TscAI	CASTG	3 cut(s)	148, 482, 487
TseI	GCWGC	2 cut(s)	308, 552
TspDTI	ATGAA	2 cut(s)	306, 601
TspGWI	ACGGA	3 cut(s)	191, 209, 356
TspMI	CCCGGG	1 cut(s)	265
TspRI	CASTG	3 cut(s)	148, 482, 487
VpaK11BI	GGWCC	1 cut(s)	75
XceI	RCATGY	1 cut(s)	623
XmaI	CCCGGG	1 cut(s)	265
XspI	CTAG	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.