Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006029

Physical Location & Seq

Genomic Coordinates Forward (+)

11736748 .. 11738695

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G114100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAATCCGGCTGTTAAGTACACGCAGCACCGCAGCCACACGAAGATGGTGGCGAATTCGGCAGCTGAGTTTGAGTCGGTGAGGCCCAGAGTTGTACGGATATGGGTCACCGACGGAGATGCCACCGACTCATCCAGCGACGACGAACCCCCCGAGTCGTCGTTCTGCGGGCGCCGCCGAGTCAAGAGGTTCATCAACGAGATTACTATCGAGTCCTGCTCCAGAGAGACTGACGCTGTTTGGAGGAGCCGGACGACGAGGACCGGACGGAAGAGAGCCTCCCCGAAGTCCGGAGGGCCGGCGAGTGGTCGTACGTTAAAGGCGGTAGCTGCTGCTCCCGCCGGGAAGAAGTTCCGAGGCGTGAGGCAGAGGCCCTGGGGAAAATGGGCTGCGGAGATTAGAGATCCTCTGCGACGTGTACGGCTCTGGTTGGGCACTTACGACACGGCGGAGGAAGCCGCCATGGTGTACGACAACGCCGCTATTCAGCTTCGTGGGCCTGACGCGCTCACCAACTTCGCTGCTCCTCCGGCGAAGTCCTTGCCAGACGTGAAGCCGGTTATTAGCTCCTGCTACAATTCCGGCGACGAGTCTCACAACAATCTTTGCTCCCCGACCTCCGTGTTGCGGTGTCCATCACCTTCGAACGAAGAAGCCGACTCGCCGAGTTTCAAAGAGGAGGTTCCGGACATCGCCGAATTCCGAAATGTCCGGGACGACTCTTGTGTATCGGAGAACTTCTCCGAGTTTTCGGAATACACGAGTTTCGAATCGTTTATTCCGGACGACATTTTTGATTTTCAGACACCTGACTTCTTGGAAGAAACGAGTCTACGAGACGTTGGTATTTTGAAAGAAGATTTCGGCGATTTAGGAAATTTCGGCAACATTTTTGTTGATTCAGTTCGGGATTTCGGGTTCGGTTCCTCTGCGTGGTGCCTGGATGACCACTTCCAGGACATCGGCGATCTTTTCAGTTCGGATCCTCTGGTTGCGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

334

Amino Acids

37.02

Weight (kDa)

4.98

Isoelectric Point (pI)

56.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11140 AT4G23750 AT4G23750
fragaria_vesca	FvH4_5g03920
malus_domestica	MD02G1220900.v1.1 MD06G1100500.v1.1 MD14G1120000.v1.1
prunus_persica	Prupe.5G114100_v2.0.a1
pyrus_communis	pycom06g09580
rosa_chinensis	RchiOBHm_Chr7g0195581
rosa_laevigata	RLG00000004107
rosa_multiflora	Rmu_co7992594.1_g000001 Rmu_sc0000487.1_g000064 Rmu_sc0004073.1_g000001 Rmu_ssc0000078.1_g000008 Rmu_ssc0000473.1_g000022
rosa_roxburghii	Rroxscaffold_3G00260330
rosa_rugosa	Rorug07G0024400
rosa_samantha	Rh4AG072300 Rh4AG073100 Rh4BG070300 Rh4CG078700 Rh7AG152100 Rh7BG153800 Rh7CG157300 Rh7DG153100
rosa_wichuraiana	Rw7G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	171, 936
AccI	GTMKAC	1 cut(s)	832
AccII	CGCG	1 cut(s)	506
AccIII	TCCGGA	3 cut(s)	290, 685, 781
AclWI	GGATC	3 cut(s)	398, 977, 990
AcsI	RAATTY	3 cut(s)	55, 698, 877
AcyI	GRCGYC	1 cut(s)	172
AfaI	GTAC	5 cut(s)	20, 96, 313, 420, 470
AfiI	CCNNNNNNNGG	5 cut(s)	290, 305, 627, 933, 955
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	2 cut(s)	673, 853
AjiI	CACGTC	2 cut(s)	416, 550
AjnI	CCWGG	3 cut(s)	374, 939, 954
AloI	GAACNNNNNNTCC	2 cut(s)	902, 934
AluBI	AGCT	4 cut(s)	65, 329, 490, 567
AluI	AGCT	4 cut(s)	65, 329, 490, 567
Alw26I	GTCTC	3 cut(s)	221, 597, 831
AlwI	GGATC	3 cut(s)	398, 977, 990
Ama87I	CYCGRG	1 cut(s)	152
Aor13HI	TCCGGA	3 cut(s)	290, 685, 781
AoxI	GGCC	4 cut(s)	83, 296, 371, 497
ApeKI	GCWGC	7 cut(s)	25, 33, 62, 329, 332, 389, 521
ApoI	RAATTY	3 cut(s)	55, 698, 877
ArsI	GACNNNNNNTTYG	2 cut(s)	776, 808
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	3 cut(s)	174, 508, 997
AspS9I	GGNCC	5 cut(s)	84, 261, 296, 372, 497
AsuC2I	CCSGG	2 cut(s)	343, 713
AsuHPI	GGTGA	4 cut(s)	91, 100, 502, 630
AsuII	TTCGAA	2 cut(s)	644, 768
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	261
BaeGI	GKGCMC	1 cut(s)	437
BamHI	GGATCC	1 cut(s)	982
BanI	GGYRCC	2 cut(s)	171, 936
BauI	CACGAG	1 cut(s)	760
BbvI	GCAGC	7 cut(s)	37, 45, 74, 316, 319, 376, 508
BccI	CCATC	2 cut(s)	40, 643
BceAI	ACGGC	2 cut(s)	437, 462
BcgI	CGANNNNNNTGC	4 cut(s)	101, 135, 523, 557
BciT130I	CCWGG	3 cut(s)	376, 941, 956
BcnI	CCSGG	2 cut(s)	343, 713
BcoDI	GTCTC	3 cut(s)	221, 597, 831
BfoI	RGCGCY	1 cut(s)	175
Bme1390I	CCNGG	5 cut(s)	343, 376, 713, 941, 956
Bme18I	GGWCC	1 cut(s)	261
BmeT110I	CYCGRG	1 cut(s)	152
BmgBI	CACGTC	2 cut(s)	416, 550
BmgT120I	GGNCC	5 cut(s)	84, 261, 296, 372, 497
BmiI	GGNNCC	6 cut(s)	173, 248, 684, 925, 938, 984
BmrFI	CCNGG	5 cut(s)	343, 376, 713, 941, 956
BmsI	GCATC	1 cut(s)	109
BplI	GAGNNNNNCTC	4 cut(s)	203, 235, 725, 757
BpmI	CTGGAG	1 cut(s)	205
Bpu14I	TTCGAA	2 cut(s)	644, 768
BpuMI	CCSGG	2 cut(s)	343, 713
BsaBI	GATNNNNATC	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	172
BsaJI	CCNNGG	4 cut(s)	355, 374, 375, 462
BsaWI	WCCGGW	4 cut(s)	263, 290, 685, 781
Bsc4I	CCNNNNNNNGG	5 cut(s)	290, 305, 627, 933, 955
Bse118I	RCCGGY	2 cut(s)	298, 556
Bse8I	GATNNNNATC	1 cut(s)	206
BseAI	TCCGGA	3 cut(s)	290, 685, 781
BseBI	CCWGG	3 cut(s)	376, 941, 956
BseDI	CCNNGG	4 cut(s)	355, 374, 375, 462
BseGI	GGATG	2 cut(s)	131, 949
BseJI	GATNNNNATC	1 cut(s)	206
BseLI	CCNNNNNNNGG	5 cut(s)	290, 305, 627, 933, 955
BseMII	CTCAG	1 cut(s)	57
BseRI	GAGGAG	3 cut(s)	259, 516, 692
BseSI	GKGCMC	1 cut(s)	437
BseXI	GCAGC	7 cut(s)	37, 45, 74, 316, 319, 376, 508
Bsh1236I	CGCG	1 cut(s)	506
BshFI	GGCC	4 cut(s)	85, 298, 373, 499
BshNI	GGYRCC	2 cut(s)	171, 936
BsiHKCI	CYCGRG	1 cut(s)	152
BsiWI	CGTACG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	728
BslI	CCNNNNNNNGG	5 cut(s)	290, 305, 627, 933, 955
BsmAI	GTCTC	3 cut(s)	221, 597, 831
BsmBI	CGTCTC	1 cut(s)	831
BsmFI	GGGAC	1 cut(s)	728
BsnI	GGCC	4 cut(s)	85, 298, 373, 499
BsoBI	CYCGRG	1 cut(s)	152
Bsp119I	TTCGAA	2 cut(s)	644, 768
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp13I	TCCGGA	3 cut(s)	290, 685, 781
Bsp143I	GATC	3 cut(s)	403, 967, 982
Bsp19I	CCATGG	1 cut(s)	462
BspANI	GGCC	4 cut(s)	85, 298, 373, 499
BspCNI	CTCAG	1 cut(s)	58
BspEI	TCCGGA	3 cut(s)	290, 685, 781
BspFNI	CGCG	1 cut(s)	506
BspLI	GGNNCC	6 cut(s)	173, 248, 684, 925, 938, 984
BspPI	GGATC	3 cut(s)	398, 977, 990
BspT104I	TTCGAA	2 cut(s)	644, 768
BspT107I	GGYRCC	2 cut(s)	171, 936
BsrFI	RCCGGY	2 cut(s)	298, 556
BssAI	RCCGGY	2 cut(s)	298, 556
BssECI	CCNNGG	4 cut(s)	355, 374, 375, 462
BssMI	GATC	3 cut(s)	403, 967, 982
BssNI	GRCGYC	1 cut(s)	172
BssSI	CACGAG	1 cut(s)	760
BssT1I	CCWWGG	1 cut(s)	462
Bst2BI	CACGAG	1 cut(s)	760
Bst2UI	CCWGG	3 cut(s)	376, 941, 956
Bst6I	CTCTTC	1 cut(s)	266
BstACI	GRCGYC	1 cut(s)	172
BstBI	TTCGAA	2 cut(s)	644, 768
BstC8I	GCNNGC	2 cut(s)	170, 300
BstDEI	CTNAG	1 cut(s)	66
BstDSI	CCRYGG	1 cut(s)	462
BstEII	GGTNACC	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	131, 949
BstFNI	CGCG	1 cut(s)	506
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	3 cut(s)	174, 508, 997
BstKTI	GATC	3 cut(s)	406, 970, 985
BstMAI	GTCTC	3 cut(s)	221, 597, 831
BstMBI	GATC	3 cut(s)	403, 967, 982
BstMWI	GCNNNNNNNGC	8 cut(s)	59, 174, 329, 338, 455, 496, 505, 530
BstNI	CCWGG	3 cut(s)	376, 941, 956
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	5 cut(s)	341, 374, 711, 939, 954
BstSLI	GKGCMC	1 cut(s)	437
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	7 cut(s)	37, 45, 74, 316, 319, 376, 508
BstX2I	RGATCY	2 cut(s)	403, 982
BstYI	RGATCY	2 cut(s)	403, 982
BsuRI	GGCC	4 cut(s)	85, 298, 373, 499
BtgI	CCRYGG	1 cut(s)	462
BtgZI	GCGATG	1 cut(s)	676
BtrI	CACGTC	2 cut(s)	416, 550
BtsCI	GGATG	2 cut(s)	131, 949
Cac8I	GCNNGC	2 cut(s)	170, 300
CfoI	GCGC	3 cut(s)	174, 508, 997
Cfr10I	RCCGGY	2 cut(s)	298, 556
Cfr13I	GGNCC	5 cut(s)	84, 261, 296, 372, 497
CseI	GACGC	2 cut(s)	242, 512
Csp6I	GTAC	5 cut(s)	19, 95, 312, 419, 469
CviAII	CATG	1 cut(s)	463
CviQI	GTAC	5 cut(s)	19, 95, 312, 419, 469
DdeI	CTNAG	1 cut(s)	66
DinI	GGCGCC	1 cut(s)	173
DpnI	GATC	3 cut(s)	405, 969, 984
DpnII	GATC	3 cut(s)	403, 967, 982
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	152
Eco91I	GGTNACC	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	372
EcoO65I	GGTNACC	1 cut(s)	106
EcoRI	GAATTC	2 cut(s)	55, 698
EcoRII	CCWGG	3 cut(s)	374, 939, 954
EcoT14I	CCWWGG	1 cut(s)	462
EgeI	GGCGCC	1 cut(s)	173
EheI	GGCGCC	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	462
Esp3I	CGTCTC	1 cut(s)	831
FaeI	CATG	1 cut(s)	466
FaiI	YATR	2 cut(s)	103, 464
FaqI	GGGAC	1 cut(s)	728
FatI	CATG	1 cut(s)	462
FauI	CCCGC	2 cut(s)	161, 346
FblI	GTMKAC	1 cut(s)	832
FokI	GGATG	2 cut(s)	118, 956
GlaI	GCGC	3 cut(s)	173, 507, 996
GsuI	CTGGAG	1 cut(s)	205
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	4 cut(s)	85, 298, 373, 499
HgaI	GACGC	2 cut(s)	242, 512
HhaI	GCGC	3 cut(s)	174, 508, 997
Hin1I	GRCGYC	1 cut(s)	172
Hin1II	CATG	1 cut(s)	466
Hin6I	GCGC	3 cut(s)	172, 506, 995
HinP1I	GCGC	3 cut(s)	172, 506, 995
HphI	GGTGA	4 cut(s)	91, 100, 502, 630
Hpy166II	GTNNAC	4 cut(s)	21, 419, 469, 833
Hpy188I	TCNGA	7 cut(s)	356, 704, 733, 745, 754, 804, 982
Hpy188III	TCNNGA	6 cut(s)	184, 222, 291, 686, 782, 908
Hpy8I	GTNNAC	4 cut(s)	21, 419, 469, 833
Hpy99I	CGWCG	7 cut(s)	116, 143, 146, 163, 259, 417, 590
HpyAV	CCTTC	1 cut(s)	651
HpyCH4IV	ACGT	4 cut(s)	314, 415, 549, 840
HpyF10VI	GCNNNNNNNGC	8 cut(s)	59, 174, 329, 338, 455, 496, 505, 530
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	4 cut(s)	314, 415, 549, 840
Hsp92I	GRCGYC	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	466
HspAI	GCGC	3 cut(s)	172, 506, 995
KasI	GGCGCC	1 cut(s)	171
Kpn2I	TCCGGA	3 cut(s)	290, 685, 781
KroI	GCCGGC	1 cut(s)	298
KroNI	GCCGGC	1 cut(s)	300
Kzo9I	GATC	3 cut(s)	403, 967, 982
LmnI	GCTCC	6 cut(s)	224, 246, 340, 529, 572, 614
Lsp1109I	GCAGC	7 cut(s)	37, 45, 74, 316, 319, 376, 508
LweI	GCATC	1 cut(s)	109
MaeII	ACGT	4 cut(s)	314, 415, 549, 840
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	3 cut(s)	405, 969, 984
MboI	GATC	3 cut(s)	403, 967, 982
MboII	GAAGA	6 cut(s)	55, 283, 358, 662, 833, 869
MflI	RGATCY	2 cut(s)	403, 982
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	4 cut(s)	55, 577, 698, 877
Mly113I	GGCGCC	1 cut(s)	172
MlyI	GAGTC	9 cut(s)	83, 122, 164, 189, 221, 599, 653, 713, 838
MroI	TCCGGA	3 cut(s)	290, 685, 781
MroNI	GCCGGC	1 cut(s)	298
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	2 cut(s)	15, 317
MslI	CAYNNNNRTG	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	65
MspR9I	CCNGG	5 cut(s)	343, 376, 713, 941, 956
MvaI	CCWGG	3 cut(s)	376, 941, 956
MvnI	CGCG	1 cut(s)	506
MwoI	GCNNNNNNNGC	8 cut(s)	59, 174, 329, 338, 455, 496, 505, 530
NaeI	GCCGGC	1 cut(s)	300
NarI	GGCGCC	1 cut(s)	172
NciI	CCSGG	2 cut(s)	343, 713
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	3 cut(s)	403, 967, 982
NgoMIV	GCCGGC	1 cut(s)	298
NlaIII	CATG	1 cut(s)	466
NlaIV	GGNNCC	6 cut(s)	173, 248, 684, 925, 938, 984
NmeAIII	GCCGAG	2 cut(s)	203, 690
NmuCI	GTSAC	1 cut(s)	106
NspV	TTCGAA	2 cut(s)	644, 768
PasI	CCCWGGG	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	3 cut(s)	150, 654, 758
PdiI	GCCGGC	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	4, 770, 899
Pfl23II	CGTACG	1 cut(s)	311
PfoI	TCCNGGA	2 cut(s)	711, 954
PleI	GAGTC	9 cut(s)	82, 122, 163, 188, 220, 598, 653, 713, 837
PluTI	GGCGCC	1 cut(s)	175
PpsI	GAGTC	9 cut(s)	82, 122, 163, 188, 220, 598, 653, 713, 837
Psp6I	CCWGG	3 cut(s)	374, 939, 954
PspEI	GGTNACC	1 cut(s)	106
PspGI	CCWGG	3 cut(s)	374, 939, 954
PspLI	CGTACG	1 cut(s)	311
PspN4I	GGNNCC	6 cut(s)	173, 248, 684, 925, 938, 984
PspPI	GGNCC	5 cut(s)	84, 261, 296, 372, 497
PsuI	RGATCY	2 cut(s)	403, 982
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	5 cut(s)	20, 96, 313, 420, 470
RsaNI	GTAC	5 cut(s)	19, 95, 312, 419, 469
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	15, 317
Sau3AI	GATC	3 cut(s)	403, 967, 982
Sau96I	GGNCC	5 cut(s)	84, 261, 296, 372, 497
SchI	GAGTC	9 cut(s)	83, 122, 164, 189, 221, 599, 653, 713, 838
ScrFI	CCNGG	5 cut(s)	343, 376, 713, 941, 956
SduI	GDGCHC	1 cut(s)	437
SfaNI	GCATC	1 cut(s)	109
SfoI	GGCGCC	1 cut(s)	173
SfuI	TTCGAA	2 cut(s)	644, 768
SinI	GGWCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	44
Sse9I	AATT	4 cut(s)	55, 577, 698, 877
SspDI	GGCGCC	1 cut(s)	171
StyD4I	CCNGG	5 cut(s)	341, 374, 711, 939, 954
StyI	CCWWGG	1 cut(s)	462
TaiI	ACGT	4 cut(s)	317, 418, 552, 843
TaqI	TCGA	3 cut(s)	210, 644, 768
TasI	AATT	4 cut(s)	55, 577, 698, 877
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	3 cut(s)	177, 461, 482
TfiI	GAWTC	3 cut(s)	4, 770, 899
Tru1I	TTAA	2 cut(s)	15, 317
Tru9I	TTAA	2 cut(s)	15, 317
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	7 cut(s)	25, 33, 62, 329, 332, 389, 521
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	17, 181
TspGWI	ACGGA	4 cut(s)	112, 129, 283, 610
VpaK11BI	GGWCC	1 cut(s)	261
XapI	RAATTY	3 cut(s)	55, 698, 877
XmiI	GTMKAC	1 cut(s)	832
XmnI	GAANNNNTTC	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.