Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006029

Physical Location & Seq

Genomic Coordinates Reverse (-)

12292908 .. 12294490

Gene Structure 1583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG152100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAATCCAGCCATCAAGTACTCGCAGCACCGGAACCACACCAAGCTCGTCTCTAATTCCGAAGCCGAGGCGGTGCGGCCCAGGATTGTACGGATTTCCGTCACTGACGGCGACGCCACCGATTCCTCCAGCGACGACGAGCCCGAGGCGTTCTTCGGCCGCCAGAGAGTGAAGAAGTATGTGAATGAGATTTCGATTGAGTCGTGTTCCAGGGAGGCCGAGGAGTCGGCGGCGGCGGTCTGGAAGAGCAGGACGTCGAGGACGGTGAGGAAGAAGGCCGCCGGAAAAACCGTGGTTCCGGCGACTCACCGGACTTTGAAGCCCGCGCCCGGCAAGAAGTTCCGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAAATCAGAGACCCGTTCAGGCGTGTACGGCTCTGGTTGGGTACGTACGATACGGCTGAGGAAGCGGCTATGGTGTACGACAACGCCGCCATCCAGCTGCGTGGACCTCACGCGCTCACCAACTTCCACTCTCCTCCGGCGGTCAAGTCCGAGCGGGAGGAGCGCGAGGCCGACATTATGTCCAACGTTAAGCCGGTCGTCAGTTACGGCTACAATTCCGGCGAGGAGTCACACAACACTATCTGCTCCCCAACCTCCGTGCTCCGCTGTCCCTCGCCGTCAAACGAAGACGACTCGTCGTCGCCGAGTCCCAAACAACAACTCGAAGTCCGGGAAGACTCTTGTGTTTCCGAGAACTTCTCGGAGCTCTCCGACCACACCAGCTTCGAGAGCTTCATTCCAAACGACATCTTCGATTTCCAGACGACAATACCTGACTTCTTGGAAGAGAGCAGTGTTTTCAAAGAAAGCTTCTGCGATTTCGGAAATTTCGGCGACATGTTCGCCGATTCGGCTGTGGATTTCGGGTTCGGATCCTCCGCCACCACAACCTGCGACTATTTCCAAGACATCGGCGACCTCTTTGCCTCCGACCCTCTTGTTGCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

330

Amino Acids

36.77

Weight (kDa)

5.18

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	113 - 162	3e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11140 AT4G23750 AT4G23750
fragaria_vesca	FvH4_5g03920
malus_domestica	MD02G1220900.v1.1 MD06G1100500.v1.1 MD14G1120000.v1.1
prunus_persica	Prupe.5G114100_v2.0.a1
pyrus_communis	pycom06g09580
rosa_chinensis	RchiOBHm_Chr7g0195581
rosa_laevigata	RLG00000004107
rosa_multiflora	Rmu_co7992594.1_g000001 Rmu_sc0000487.1_g000064 Rmu_sc0004073.1_g000001 Rmu_ssc0000078.1_g000008 Rmu_ssc0000473.1_g000022
rosa_roxburghii	Rroxscaffold_3G00260330
rosa_rugosa	Rorug07G0024400
rosa_samantha	Rh4AG072300 Rh4AG073100 Rh4BG070300 Rh4CG078700 Rh7AG152100 Rh7BG153800 Rh7CG157300 Rh7DG153100
rosa_wichuraiana	Rw7G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	941
AccBSI	CCGCTC	1 cut(s)	535
AccII	CGCG	3 cut(s)	326, 494, 546
AclI	AACGTT	1 cut(s)	567
AclWI	GGATC	2 cut(s)	909, 922
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	868
AcyI	GRCGYC	2 cut(s)	114, 254
AfaI	GTAC	6 cut(s)	20, 90, 408, 424, 428, 458
AfiI	CCNNNNNNNGG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	879
AgsI	TTSAA	2 cut(s)	319, 844
AhdI	GACNNNNNGTC	3 cut(s)	559, 676, 679
AjnI	CCWGG	2 cut(s)	80, 209
AloI	GAACNNNNNNTCC	2 cut(s)	893, 925
AluBI	AGCT	6 cut(s)	46, 478, 748, 765, 774, 852
AluI	AGCT	6 cut(s)	46, 478, 748, 765, 774, 852
Alw21I	GWGCWC	2 cut(s)	645, 750
Alw26I	GTCTC	2 cut(s)	55, 384
AlwI	GGATC	2 cut(s)	909, 922
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	6 cut(s)	77, 157, 216, 276, 359, 549
ApeKI	GCWGC	2 cut(s)	25, 478
ApoI	RAATTY	1 cut(s)	868
AspLEI	GCGC	3 cut(s)	328, 496, 546
AspS9I	GGNCC	2 cut(s)	78, 485
AsuC2I	CCSGG	3 cut(s)	330, 344, 713
AsuHPI	GGTGA	3 cut(s)	277, 299, 490
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	485
BamHI	GGATCC	1 cut(s)	914
BanII	GRGCYC	2 cut(s)	144, 750
BbsI	GAAGAC	2 cut(s)	675, 723
Bbv12I	GWGCWC	2 cut(s)	645, 750
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	37, 465
BccI	CCATC	2 cut(s)	20, 479
BceAI	ACGGC	6 cut(s)	124, 346, 425, 450, 604, 643
BcgI	CGANNNNNNTGC	2 cut(s)	947, 981
BciT130I	CCWGG	2 cut(s)	82, 211
BcnI	CCSGG	3 cut(s)	330, 344, 713
BcoDI	GTCTC	2 cut(s)	55, 384
BfuAI	ACCTGC	1 cut(s)	941
BglI	GCCNNNNNGGC	1 cut(s)	893
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	5 cut(s)	82, 211, 330, 344, 713
Bme18I	GGWCC	1 cut(s)	485
BmeRI	GACNNNNNGTC	3 cut(s)	559, 676, 679
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	2 cut(s)	78, 485
BmiI	GGNNCC	3 cut(s)	35, 297, 916
BmrFI	CCNGG	5 cut(s)	82, 211, 330, 344, 713
BpiI	GAAGAC	2 cut(s)	675, 723
BplI	GAGNNNNNCTC	2 cut(s)	725, 757
BpmI	CTGGAG	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	438
BpuMI	CCSGG	3 cut(s)	330, 344, 713
BsaAI	YACGTR	1 cut(s)	426
BsaHI	GRCGYC	2 cut(s)	114, 254
BsaI	GGTCTC	1 cut(s)	384
BsaJI	CCNNGG	8 cut(s)	66, 80, 144, 210, 219, 291, 343, 362
BsaWI	WCCGGW	2 cut(s)	30, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse118I	RCCGGY	1 cut(s)	574
BseBI	CCWGG	2 cut(s)	82, 211
BseDI	CCNNGG	8 cut(s)	66, 80, 144, 210, 219, 291, 343, 362
BseGI	GGATG	1 cut(s)	471
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMII	CTCAG	1 cut(s)	429
BseRI	GAGGAG	4 cut(s)	236, 504, 554, 620
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	2 cut(s)	37, 465
Bsh1236I	CGCG	3 cut(s)	326, 494, 546
Bsh1285I	CGRYCG	2 cut(s)	160, 579
BshFI	GGCC	6 cut(s)	79, 159, 218, 278, 361, 551
BsiEI	CGRYCG	2 cut(s)	160, 579
BsiHKAI	GWGCWC	2 cut(s)	645, 750
BsiHKCI	CYCGRG	1 cut(s)	143
BsiWI	CGTACG	1 cut(s)	426
BslFI	GGGAC	2 cut(s)	636, 675
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmAI	GTCTC	2 cut(s)	55, 384
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	636, 675
BsnI	GGCC	6 cut(s)	79, 159, 218, 278, 361, 551
Bso31I	GGTCTC	1 cut(s)	384
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	3 cut(s)	144, 645, 750
Bsp143I	GATC	1 cut(s)	914
BspANI	GGCC	6 cut(s)	79, 159, 218, 278, 361, 551
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	3 cut(s)	326, 494, 546
BspLI	GGNNCC	3 cut(s)	35, 297, 916
BspMI	ACCTGC	1 cut(s)	941
BspPI	GGATC	2 cut(s)	909, 922
BspQI	GCTCTTC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	384
BsrBI	CCGCTC	1 cut(s)	535
BsrFI	RCCGGY	1 cut(s)	574
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	8 cut(s)	66, 80, 144, 210, 219, 291, 343, 362
BssMI	GATC	1 cut(s)	914
BssNI	GRCGYC	2 cut(s)	114, 254
Bst2UI	CCWGG	2 cut(s)	82, 211
Bst4CI	ACNGT	2 cut(s)	265, 292
Bst6I	CTCTTC	2 cut(s)	239, 822
BstACI	GRCGYC	2 cut(s)	114, 254
BstBAI	YACGTR	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	438
BstDSI	CCRYGG	2 cut(s)	291, 362
BstF5I	GGATG	1 cut(s)	471
BstFNI	CGCG	3 cut(s)	326, 494, 546
BstHHI	GCGC	3 cut(s)	328, 496, 546
BstKTI	GATC	1 cut(s)	917
BstMAI	GTCTC	2 cut(s)	55, 384
BstMBI	GATC	1 cut(s)	914
BstMCI	CGRYCG	2 cut(s)	160, 579
BstMWI	GCNNNNNNNGC	5 cut(s)	409, 443, 541, 771, 893
BstNI	CCWGG	2 cut(s)	82, 211
BstNSI	RCATGY	1 cut(s)	883
BstSCI	CCNGG	5 cut(s)	80, 209, 328, 342, 711
BstSNI	TACGTA	1 cut(s)	426
BstUI	CGCG	3 cut(s)	326, 494, 546
BstV1I	GCAGC	2 cut(s)	37, 465
BstV2I	GAAGAC	2 cut(s)	675, 723
BstX2I	RGATCY	1 cut(s)	914
BstXI	CCANNNNNNTGG	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	914
BstZI	CGGCCG	1 cut(s)	157
BsuRI	GGCC	6 cut(s)	79, 159, 218, 278, 361, 551
BtgI	CCRYGG	2 cut(s)	291, 362
BtsCI	GGATG	1 cut(s)	471
BtsI	GCAGTG	1 cut(s)	841
BtsIMutI	CAGTG	2 cut(s)	102, 841
BveI	ACCTGC	1 cut(s)	941
Cac8I	GCNNGC	1 cut(s)	324
CfoI	GCGC	3 cut(s)	328, 496, 546
Cfr10I	RCCGGY	1 cut(s)	574
Cfr13I	GGNCC	2 cut(s)	78, 485
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	6 cut(s)	19, 89, 407, 423, 427, 457
CviAII	CATG	1 cut(s)	880
CviQI	GTAC	6 cut(s)	19, 89, 407, 423, 427, 457
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	1 cut(s)	916
DpnII	GATC	1 cut(s)	914
DriI	GACNNNNNGTC	3 cut(s)	559, 676, 679
EaeI	YGGCCR	1 cut(s)	157
EagI	CGGCCG	1 cut(s)	157
Eam1104I	CTCTTC	2 cut(s)	239, 822
Eam1105I	GACNNNNNGTC	3 cut(s)	559, 676, 679
EarI	CTCTTC	2 cut(s)	239, 822
EciI	GGCGGA	2 cut(s)	395, 910
Ecl136II	GAGCTC	1 cut(s)	748
EclXI	CGGCCG	1 cut(s)	157
Eco105I	TACGTA	1 cut(s)	426
Eco24I	GRGCYC	2 cut(s)	144, 750
Eco31I	GGTCTC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	485
Eco52I	CGGCCG	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	748
Eco88I	CYCGRG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	748
EcoRII	CCWGG	2 cut(s)	80, 209
EcoT38I	GRGCYC	2 cut(s)	144, 750
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	1 cut(s)	883
FaiI	YATR	5 cut(s)	180, 452, 560, 881, 991
FaqI	GGGAC	2 cut(s)	636, 675
FatI	CATG	1 cut(s)	879
FauI	CCCGC	2 cut(s)	331, 528
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	2 cut(s)	144, 750
GlaI	GCGC	3 cut(s)	327, 495, 545
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	6 cut(s)	79, 159, 218, 278, 361, 551
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	3 cut(s)	328, 496, 546
Hin1I	GRCGYC	2 cut(s)	114, 254
Hin1II	CATG	1 cut(s)	883
Hin6I	GCGC	3 cut(s)	326, 494, 544
HinP1I	GCGC	3 cut(s)	326, 494, 544
HindIII	AAGCTT	1 cut(s)	850
HphI	GGTGA	3 cut(s)	277, 299, 490
Hpy166II	GTNNAC	3 cut(s)	407, 457, 485
Hpy188I	TCNGA	9 cut(s)	61, 389, 532, 733, 745, 754, 866, 914, 973
Hpy188III	TCNNGA	3 cut(s)	241, 769, 802
Hpy8I	GTNNAC	3 cut(s)	407, 457, 485
Hpy99I	CGWCG	6 cut(s)	116, 137, 140, 259, 682, 685
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	2 cut(s)	265, 292
HpyCH4IV	ACGT	3 cut(s)	254, 425, 567
HpyF10VI	GCNNNNNNNGC	5 cut(s)	409, 443, 541, 771, 893
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	3 cut(s)	254, 425, 567
Hsp92I	GRCGYC	2 cut(s)	114, 254
Hsp92II	CATG	1 cut(s)	883
HspAI	GCGC	3 cut(s)	326, 494, 544
Kzo9I	GATC	1 cut(s)	914
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	4 cut(s)	541, 632, 648, 745
Lsp1109I	GCAGC	2 cut(s)	37, 465
MaeII	ACGT	3 cut(s)	254, 425, 567
MaeIII	GTNAC	3 cut(s)	100, 584, 609
MalI	GATC	1 cut(s)	916
MbiI	CCGCTC	1 cut(s)	535
MboI	GATC	1 cut(s)	914
MboII	GAAGA	8 cut(s)	145, 184, 256, 283, 680, 728, 784, 839
MflI	RGATCY	1 cut(s)	914
MhlI	GDGCHC	3 cut(s)	144, 645, 750
MluCI	AATT	3 cut(s)	55, 595, 868
MlyI	GAGTC	7 cut(s)	209, 233, 298, 617, 668, 697, 713
MmeI	TCCRAC	2 cut(s)	588, 777
MseI	TTAA	1 cut(s)	570
MspA1I	CMGCKG	2 cut(s)	478, 648
MspR9I	CCNGG	5 cut(s)	82, 211, 330, 344, 713
MvaI	CCWGG	2 cut(s)	82, 211
MvnI	CGCG	3 cut(s)	326, 494, 546
MwoI	GCNNNNNNNGC	5 cut(s)	409, 443, 541, 771, 893
NciI	CCSGG	3 cut(s)	330, 344, 713
NdeII	GATC	1 cut(s)	914
NlaIII	CATG	1 cut(s)	883
NlaIV	GGNNCC	3 cut(s)	35, 297, 916
NmeAIII	GCCGAG	3 cut(s)	91, 244, 711
NmuCI	GTSAC	2 cut(s)	100, 609
NspI	RCATGY	1 cut(s)	883
PciI	ACATGT	1 cut(s)	879
PciSI	GCTCTTC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	4 cut(s)	141, 200, 683, 792
PfeI	GAWTC	3 cut(s)	4, 122, 890
Pfl23II	CGTACG	1 cut(s)	426
PfoI	TCCNGGA	1 cut(s)	711
PleI	GAGTC	7 cut(s)	208, 232, 298, 616, 668, 696, 713
PpsI	GAGTC	7 cut(s)	208, 232, 298, 616, 668, 696, 713
Ppu21I	YACGTR	1 cut(s)	426
PscI	ACATGT	1 cut(s)	879
Psp124BI	GAGCTC	1 cut(s)	750
Psp1406I	AACGTT	1 cut(s)	567
Psp6I	CCWGG	2 cut(s)	80, 209
PspGI	CCWGG	2 cut(s)	80, 209
PspLI	CGTACG	1 cut(s)	426
PspN4I	GGNNCC	3 cut(s)	35, 297, 916
PspPI	GGNCC	2 cut(s)	78, 485
PsuI	RGATCY	1 cut(s)	914
PvuII	CAGCTG	1 cut(s)	478
RsaI	GTAC	6 cut(s)	20, 90, 408, 424, 428, 458
RsaNI	GTAC	6 cut(s)	19, 89, 407, 423, 427, 457
SacI	GAGCTC	1 cut(s)	750
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	570
Sau3AI	GATC	1 cut(s)	914
Sau96I	GGNCC	2 cut(s)	78, 485
ScaI	AGTACT	1 cut(s)	20
SchI	GAGTC	7 cut(s)	209, 233, 298, 617, 668, 697, 713
ScrFI	CCNGG	5 cut(s)	82, 211, 330, 344, 713
SduI	GDGCHC	3 cut(s)	144, 645, 750
SinI	GGWCC	1 cut(s)	485
SnaBI	TACGTA	1 cut(s)	426
Sse9I	AATT	3 cut(s)	55, 595, 868
SstI	GAGCTC	1 cut(s)	750
StyD4I	CCNGG	5 cut(s)	80, 209, 328, 342, 711
TaaI	ACNGT	2 cut(s)	265, 292
TaiI	ACGT	3 cut(s)	257, 428, 570
TaqI	TCGA	5 cut(s)	194, 257, 705, 768, 795
TasI	AATT	3 cut(s)	55, 595, 868
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	8 cut(s)	79, 162, 233, 236, 281, 380, 449, 470
TfiI	GAWTC	3 cut(s)	4, 122, 890
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TscAI	CASTG	2 cut(s)	109, 841
TseFI	GTSAC	2 cut(s)	100, 609
TseI	GCWGC	2 cut(s)	25, 478
Tsp45I	GTSAC	2 cut(s)	100, 609
TspDTI	ATGAA	2 cut(s)	17, 766
TspGWI	ACGGA	3 cut(s)	88, 106, 628
TspRI	CASTG	2 cut(s)	109, 841
VpaK11BI	GGWCC	1 cut(s)	485
XapI	RAATTY	1 cut(s)	868
XceI	RCATGY	1 cut(s)	883
ZraI	GACGTC	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.