Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006029

Physical Location & Seq

Genomic Coordinates Forward (+)

14886994 .. 14888061

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g09580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAATCGTCCTGCTGTTAAGTACACGCACCACCGGAGCCACACTAAGATGGTGGCCAATTCGGCGGAAGCGGACGAGTTCGAGTCCGTCAGGCCGCGTGTTGTGCGGATATCGGTCACCGACGGAAACGCCACCGACTCCTCCAGTGACGACGAGGCCGAGGGCTCGTCTTTTTGTGGGACCCGCCACCGGGTCAAGAGATTTGTTAATGAGATTACCATCGAGTCCTGCTCAAACAGGGACACCGACTCTGCCGTTTGGAGGAGTCGGATGTCGAGGACCGGGAGGAAGCGGCCGTCTGGGAAATCCAAAGGCCCGGCGAGTGGTCGCCGGGATTTGAAGGCGGTTGCTGCTCCTGCGGGGAAGAAGTTCCGTGGCGTGAGGCAGAGGCCCTGGGGAAAATGGGCGGCGGAGATAAGAGATCCTCTGAGACGTGTACGGCTCTGGTTGGGAACGTTTGACACGGCCGAGGAGGCCGCTGTGGTGTACGACAACGCTGCCATTCAGCTGCGTGGACCCGACGCGCTCACCAACTTCGCTCCTCCTCCTCCGGCGATATCTCTACCTGACGTTAAGCCGGAAGTTAGCTCTGGCTTTTATTCCGGCGACGGGTCGCACAACCACCTTTGCTCTCCGACGTCAGTGTTACGCTGTCCCTCGCCTTCCAACGAAGAAGCCGAGTCGCCGTGCCCGAAACAATCTCCGGAAGTCACCGAAGTCCGAAATGTCCGAGGGAACTCCTCCATTTCGAAGAGCTTGTCCGAGTTTTCGGATTACACAAGTTTCGAAACGTTTATTCCGAACGACATATTTAACTTCGAAACCTCGATACCGGACTTCTTCGAGGAGAATAATCTCCGAGACGATATCTGTATTTTGAAGGAAGAAATCACCGATTTCGGAAACTTCGGCATTTCGAAAGAAGAAATGACCGATTTCGGAAACTTGGGTGACCTGTTTGTCGATTCGGTTCAGGACTTCGGATTCGGGTCCGCGCCGTGGTCTACGGAGGACTGTTTCCAAGACATCGGCGACCTGTTTAGTTCCGATCCTCTGGTTGCGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

356

Amino Acids

39.26

Weight (kDa)

5.19

Isoelectric Point (pI)

53.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	123 - 172	1.3e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11140 AT4G23750 AT4G23750
fragaria_vesca	FvH4_5g03920
malus_domestica	MD02G1220900.v1.1 MD06G1100500.v1.1 MD14G1120000.v1.1
prunus_persica	Prupe.5G114100_v2.0.a1
pyrus_communis	pycom06g09580
rosa_chinensis	RchiOBHm_Chr7g0195581
rosa_laevigata	RLG00000004107
rosa_multiflora	Rmu_co7992594.1_g000001 Rmu_sc0000487.1_g000064 Rmu_sc0004073.1_g000001 Rmu_ssc0000078.1_g000008 Rmu_ssc0000473.1_g000022
rosa_roxburghii	Rroxscaffold_3G00260330
rosa_rugosa	Rorug07G0024400
rosa_samantha	Rh4AG072300 Rh4AG073100 Rh4BG070300 Rh4CG078700 Rh7AG152100 Rh7BG153800 Rh7CG157300 Rh7DG153100
rosa_wichuraiana	Rw7G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	959
AatII	GACGTC	1 cut(s)	641
AccI	GTMKAC	1 cut(s)	1004
AccII	CGCG	3 cut(s)	97, 524, 995
AccIII	TCCGGA	1 cut(s)	703
AclI	AACGTT	2 cut(s)	455, 791
AclWI	GGATC	2 cut(s)	416, 1043
AcoI	YGGCCR	3 cut(s)	54, 293, 465
AcyI	GRCGYC	1 cut(s)	638
AfaI	GTAC	3 cut(s)	23, 438, 488
AfiI	CCNNNNNNNGG	6 cut(s)	189, 190, 261, 323, 609, 999
AflIII	ACRYGT	1 cut(s)	433
AgsI	TTSAA	2 cut(s)	340, 880
AjiI	CACGTC	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	392
AluBI	AGCT	3 cut(s)	508, 588, 756
AluI	AGCT	3 cut(s)	508, 588, 756
Alw26I	GTCTC	2 cut(s)	424, 855
AlwI	GGATC	2 cut(s)	416, 1043
Aor13HI	TCCGGA	1 cut(s)	703
AoxI	GGCC	8 cut(s)	54, 92, 156, 293, 313, 389, 465, 474
ApeKI	GCWGC	3 cut(s)	350, 497, 508
ArsI	GACNNNNNNTTYG	4 cut(s)	743, 775, 968, 1000
Asp700I	GAANNNNTTC	1 cut(s)	368
AspLEI	GCGC	3 cut(s)	526, 997, 1063
AspS9I	GGNCC	6 cut(s)	180, 279, 314, 390, 515, 990
AsuC2I	CCSGG	4 cut(s)	191, 283, 317, 332
AsuHPI	GGTGA	5 cut(s)	109, 520, 703, 883, 962
AsuII	TTCGAA	4 cut(s)	749, 786, 819, 917
AvaII	GGWCC	4 cut(s)	180, 279, 515, 990
BaeGI	GKGCMC	1 cut(s)	692
BalI	TGGCCA	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	167
BbvI	GCAGC	3 cut(s)	337, 484, 495
BccI	CCATC	2 cut(s)	43, 227
BceAI	ACGGC	6 cut(s)	239, 280, 455, 480, 670, 982
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciT130I	CCWGG	1 cut(s)	394
BcnI	CCSGG	4 cut(s)	191, 283, 317, 332
BcoDI	GTCTC	2 cut(s)	424, 855
BglI	GCCNNNNNGGC	2 cut(s)	62, 473
BisI	GCNGC	7 cut(s)	95, 293, 351, 408, 477, 498, 509
BlsI	GCNGC	7 cut(s)	96, 294, 352, 409, 478, 499, 510
Bme1390I	CCNGG	5 cut(s)	191, 283, 317, 332, 394
Bme18I	GGWCC	4 cut(s)	180, 279, 515, 990
BmgBI	CACGTC	1 cut(s)	434
BmgT120I	GGNCC	6 cut(s)	180, 279, 314, 390, 515, 990
BmiI	GGNNCC	5 cut(s)	38, 181, 182, 517, 991
BmrFI	CCNGG	5 cut(s)	191, 283, 317, 332, 394
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpmI	CTGGAG	1 cut(s)	127
Bpu14I	TTCGAA	4 cut(s)	749, 786, 819, 917
BpuMI	CCSGG	4 cut(s)	191, 283, 317, 332
BsaBI	GATNNNNATC	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	638
BsaJI	CCNNGG	7 cut(s)	159, 373, 392, 393, 468, 730, 998
BsaWI	WCCGGW	3 cut(s)	33, 703, 832
Bsc4I	CCNNNNNNNGG	6 cut(s)	189, 190, 261, 323, 609, 999
Bse1I	ACTGG	1 cut(s)	144
Bse8I	GATNNNNATC	1 cut(s)	218
BseAI	TCCGGA	1 cut(s)	703
BseBI	CCWGG	1 cut(s)	394
BseDI	CCNNGG	7 cut(s)	159, 373, 392, 393, 468, 730, 998
BseGI	GGATG	1 cut(s)	276
BseJI	GATNNNNATC	1 cut(s)	218
BseLI	CCNNNNNNNGG	6 cut(s)	189, 190, 261, 323, 609, 999
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	8 cut(s)	130, 277, 485, 531, 534, 537, 730, 860
BseSI	GKGCMC	1 cut(s)	692
BseX3I	CGGCCG	2 cut(s)	293, 465
BseXI	GCAGC	3 cut(s)	337, 484, 495
Bsh1236I	CGCG	3 cut(s)	97, 524, 995
Bsh1285I	CGRYCG	2 cut(s)	296, 468
BshFI	GGCC	8 cut(s)	56, 94, 158, 295, 315, 391, 467, 476
BsiEI	CGRYCG	2 cut(s)	296, 468
BslFI	GGGAC	3 cut(s)	193, 254, 639
BslI	CCNNNNNNNGG	6 cut(s)	189, 190, 261, 323, 609, 999
BsmAI	GTCTC	2 cut(s)	424, 855
BsmBI	CGTCTC	2 cut(s)	424, 855
BsmFI	GGGAC	3 cut(s)	193, 254, 639
BsnI	GGCC	8 cut(s)	56, 94, 158, 295, 315, 391, 467, 476
Bsp119I	TTCGAA	4 cut(s)	749, 786, 819, 917
Bsp1286I	GDGCHC	2 cut(s)	167, 692
Bsp13I	TCCGGA	1 cut(s)	703
Bsp143I	GATC	2 cut(s)	421, 1048
BspANI	GGCC	8 cut(s)	56, 94, 158, 295, 315, 391, 467, 476
BspCNI	CTCAG	1 cut(s)	420
BspEI	TCCGGA	1 cut(s)	703
BspFNI	CGCG	3 cut(s)	97, 524, 995
BspLI	GGNNCC	5 cut(s)	38, 181, 182, 517, 991
BspPI	GGATC	2 cut(s)	416, 1043
BspQI	GCTCTTC	1 cut(s)	746
BspT104I	TTCGAA	4 cut(s)	749, 786, 819, 917
BsrI	ACTGG	1 cut(s)	144
BssECI	CCNNGG	7 cut(s)	159, 373, 392, 393, 468, 730, 998
BssMI	GATC	2 cut(s)	421, 1048
BssNI	GRCGYC	1 cut(s)	638
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	1 cut(s)	1016
Bst6I	CTCTTC	1 cut(s)	746
BstACI	GRCGYC	1 cut(s)	638
BstBI	TTCGAA	4 cut(s)	749, 786, 819, 917
BstDEI	CTNAG	2 cut(s)	45, 428
BstDSI	CCRYGG	2 cut(s)	373, 998
BstEII	GGTNACC	2 cut(s)	115, 950
BstF5I	GGATG	1 cut(s)	276
BstFNI	CGCG	3 cut(s)	97, 524, 995
BstHHI	GCGC	3 cut(s)	526, 997, 1063
BstKTI	GATC	2 cut(s)	424, 1051
BstMAI	GTCTC	2 cut(s)	424, 855
BstMBI	GATC	2 cut(s)	421, 1048
BstMCI	CGRYCG	2 cut(s)	296, 468
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 103, 350, 356, 473
BstNI	CCWGG	1 cut(s)	394
BstPI	GGTNACC	2 cut(s)	115, 950
BstSCI	CCNGG	5 cut(s)	189, 281, 315, 330, 392
BstSLI	GKGCMC	1 cut(s)	692
BstUI	CGCG	3 cut(s)	97, 524, 995
BstV1I	GCAGC	3 cut(s)	337, 484, 495
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BstZI	CGGCCG	2 cut(s)	293, 465
BsuRI	GGCC	8 cut(s)	56, 94, 158, 295, 315, 391, 467, 476
BtgI	CCRYGG	2 cut(s)	373, 998
BtrI	CACGTC	1 cut(s)	434
BtsCI	GGATG	1 cut(s)	276
BtsIMutI	CAGTG	2 cut(s)	151, 648
CfoI	GCGC	3 cut(s)	526, 997, 1063
Cfr13I	GGNCC	6 cut(s)	180, 279, 314, 390, 515, 990
CseI	GACGC	1 cut(s)	530
Csp6I	GTAC	3 cut(s)	22, 437, 487
CviQI	GTAC	3 cut(s)	22, 437, 487
DdeI	CTNAG	2 cut(s)	45, 428
DpnI	GATC	2 cut(s)	423, 1050
DpnII	GATC	2 cut(s)	421, 1048
DrdI	GACNNNNNNGTC	1 cut(s)	959
DseDI	GACNNNNNNGTC	1 cut(s)	959
EaeI	YGGCCR	3 cut(s)	54, 293, 465
EagI	CGGCCG	2 cut(s)	293, 465
Eam1104I	CTCTTC	1 cut(s)	746
EarI	CTCTTC	1 cut(s)	746
EciI	GGCGGA	2 cut(s)	80, 425
EclXI	CGGCCG	2 cut(s)	293, 465
Eco24I	GRGCYC	1 cut(s)	167
Eco32I	GATATC	3 cut(s)	111, 558, 868
Eco47I	GGWCC	4 cut(s)	180, 279, 515, 990
Eco52I	CGGCCG	2 cut(s)	293, 465
Eco91I	GGTNACC	2 cut(s)	115, 950
EcoO109I	RGGNCCY	2 cut(s)	180, 390
EcoO65I	GGTNACC	2 cut(s)	115, 950
EcoRII	CCWGG	1 cut(s)	392
EcoRV	GATATC	3 cut(s)	111, 558, 868
EcoT38I	GRGCYC	1 cut(s)	167
Esp3I	CGTCTC	2 cut(s)	424, 855
FaiI	YATR	2 cut(s)	809, 1066
FaqI	GGGAC	3 cut(s)	193, 254, 639
FauI	CCCGC	2 cut(s)	191, 352
FblI	GTMKAC	1 cut(s)	1004
Fnu4HI	GCNGC	7 cut(s)	95, 293, 351, 408, 477, 498, 509
FokI	GGATG	1 cut(s)	283
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	7 cut(s)	95, 293, 351, 408, 477, 498, 509
GlaI	GCGC	3 cut(s)	525, 996, 1062
GluI	GCNGC	7 cut(s)	95, 293, 351, 408, 477, 498, 509
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	8 cut(s)	56, 94, 158, 295, 315, 391, 467, 476
HgaI	GACGC	1 cut(s)	530
HhaI	GCGC	3 cut(s)	526, 997, 1063
Hin1I	GRCGYC	1 cut(s)	638
Hin6I	GCGC	3 cut(s)	524, 995, 1061
HinP1I	GCGC	3 cut(s)	524, 995, 1061
HinfI	GANTC	9 cut(s)	4, 83, 137, 224, 248, 265, 680, 965, 984
HphI	GGTGA	5 cut(s)	109, 520, 703, 883, 962
Hpy166II	GTNNAC	5 cut(s)	24, 437, 487, 515, 1005
Hpy188III	TCNNGA	3 cut(s)	196, 704, 974
Hpy8I	GTNNAC	5 cut(s)	24, 437, 487, 515, 1005
Hpy99I	CGWCG	5 cut(s)	125, 155, 524, 611, 640
HpyAV	CCTTC	3 cut(s)	334, 672, 874
HpyCH4III	ACNGT	1 cut(s)	1016
HpyCH4IV	ACGT	5 cut(s)	433, 455, 570, 638, 791
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 103, 350, 356, 473
HpyF3I	CTNAG	2 cut(s)	45, 428
HpySE526I	ACGT	5 cut(s)	433, 455, 570, 638, 791
Hsp92I	GRCGYC	1 cut(s)	638
HspAI	GCGC	3 cut(s)	524, 995, 1061
KflI	GGGWCCC	1 cut(s)	180
Kpn2I	TCCGGA	1 cut(s)	703
Kzo9I	GATC	2 cut(s)	421, 1048
LguI	GCTCTTC	1 cut(s)	746
LmnI	GCTCC	3 cut(s)	36, 358, 544
Lsp1109I	GCAGC	3 cut(s)	337, 484, 495
MaeII	ACGT	5 cut(s)	433, 455, 570, 638, 791
MaeIII	GTNAC	5 cut(s)	115, 146, 645, 709, 950
MalI	GATC	2 cut(s)	423, 1050
MboI	GATC	2 cut(s)	421, 1048
MboII	GAAGA	6 cut(s)	376, 683, 763, 832, 896, 935
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	167, 692
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	1 cut(s)	58
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	6 cut(s)	92, 131, 233, 242, 274, 689
MmeI	TCCRAC	3 cut(s)	248, 659, 690
Mox20I	TGGCCA	1 cut(s)	56
MroI	TCCGGA	1 cut(s)	703
MroXI	GAANNNNTTC	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	4 cut(s)	18, 207, 573, 813
MslI	CAYNNNNRTG	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	56
MspA1I	CMGCKG	2 cut(s)	479, 508
MspR9I	CCNGG	5 cut(s)	191, 283, 317, 332, 394
MvaI	CCWGG	1 cut(s)	394
MvnI	CGCG	3 cut(s)	97, 524, 995
MwoI	GCNNNNNNNGC	5 cut(s)	62, 103, 350, 356, 473
NciI	CCSGG	4 cut(s)	191, 283, 317, 332
NdeII	GATC	2 cut(s)	421, 1048
NlaIV	GGNNCC	5 cut(s)	38, 181, 182, 517, 991
NmeAIII	GCCGAG	3 cut(s)	184, 493, 703
NmuCI	GTSAC	4 cut(s)	115, 146, 709, 950
NspV	TTCGAA	4 cut(s)	749, 786, 819, 917
PasI	CCCWGGG	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	746
PcsI	WCGNNNNNNNCGW	4 cut(s)	156, 675, 689, 797
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	3 cut(s)	4, 965, 984
PkrI	GCNGC	7 cut(s)	96, 294, 352, 409, 478, 499, 510
PleI	GAGTC	6 cut(s)	91, 131, 232, 242, 273, 688
PpsI	GAGTC	6 cut(s)	91, 131, 232, 242, 273, 688
PpuMI	RGGWCCY	1 cut(s)	180
Psp1406I	AACGTT	2 cut(s)	455, 791
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	392
PspEI	GGTNACC	2 cut(s)	115, 950
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	5 cut(s)	38, 181, 182, 517, 991
PspPI	GGNCC	6 cut(s)	180, 279, 314, 390, 515, 990
PspPPI	RGGWCCY	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	508
RsaI	GTAC	3 cut(s)	23, 438, 488
RsaNI	GTAC	3 cut(s)	22, 437, 487
RseI	CAYNNNNRTG	1 cut(s)	47
SapI	GCTCTTC	1 cut(s)	746
SaqAI	TTAA	4 cut(s)	18, 207, 573, 813
SatI	GCNGC	7 cut(s)	95, 293, 351, 408, 477, 498, 509
Sau3AI	GATC	2 cut(s)	421, 1048
Sau96I	GGNCC	6 cut(s)	180, 279, 314, 390, 515, 990
SchI	GAGTC	6 cut(s)	92, 131, 233, 242, 274, 689
ScrFI	CCNGG	5 cut(s)	191, 283, 317, 332, 394
SduI	GDGCHC	2 cut(s)	167, 692
SfiI	GGCCNNNNNGGCC	1 cut(s)	473
SfuI	TTCGAA	4 cut(s)	749, 786, 819, 917
SinI	GGWCC	4 cut(s)	180, 279, 515, 990
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	58
StyD4I	CCNGG	5 cut(s)	189, 281, 315, 330, 392
TaaI	ACNGT	1 cut(s)	1016
TaiI	ACGT	5 cut(s)	436, 458, 573, 641, 794
TaqII	GACCGA	2 cut(s)	103, 947
TasI	AATT	1 cut(s)	58
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	4 cut(s)	97, 295, 410, 479
TfiI	GAWTC	3 cut(s)	4, 965, 984
Tru1I	TTAA	4 cut(s)	18, 207, 573, 813
Tru9I	TTAA	4 cut(s)	18, 207, 573, 813
TscAI	CASTG	2 cut(s)	151, 648
TseFI	GTSAC	4 cut(s)	115, 146, 709, 950
TseI	GCWGC	3 cut(s)	350, 497, 508
Tsp45I	GTSAC	4 cut(s)	115, 146, 709, 950
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	4 cut(s)	76, 138, 362, 1022
TspRI	CASTG	2 cut(s)	151, 648
VpaK11BI	GGWCC	4 cut(s)	180, 279, 515, 990
XmiI	GTMKAC	1 cut(s)	1004
XmnI	GAANNNNTTC	1 cut(s)	368
ZraI	GACGTC	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.