Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006029

Physical Location & Seq

Genomic Coordinates Forward (+)

14858646 .. 14858885

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG072300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAATCCAGCCGTCAAGTACTCGCAGCACCGGAATCACACCAAGCTCGTCTCTAATTCCGAAGCCGAGGCGGTGCGGCCCAGGATTGTACAGATTTCAGTCACTGACGACAATTCCACCGATTCCTTTAGAGACGACAAGCCGGAGTCTTTCTTCGGCTGCCAGAGAGTGAATAAGTATGTGAATGAGATTTCGATTGAGTCGTGTTCGAGGGAGGCCGAGGAGGTGGCGGCGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

79

Amino Acids

8.93

Weight (kDa)

5.27

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11140 AT4G23750 AT4G23750
fragaria_vesca	FvH4_5g03920
malus_domestica	MD02G1220900.v1.1 MD06G1100500.v1.1 MD14G1120000.v1.1
prunus_persica	Prupe.5G114100_v2.0.a1
pyrus_communis	pycom06g09580
rosa_chinensis	RchiOBHm_Chr7g0195581
rosa_laevigata	RLG00000004107
rosa_multiflora	Rmu_co7992594.1_g000001 Rmu_sc0000487.1_g000064 Rmu_sc0004073.1_g000001 Rmu_ssc0000078.1_g000008 Rmu_ssc0000473.1_g000022
rosa_roxburghii	Rroxscaffold_3G00260330
rosa_rugosa	Rorug07G0024400
rosa_samantha	Rh4AG072300 Rh4AG073100 Rh4BG070300 Rh4CG078700 Rh7AG152100 Rh7BG153800 Rh7CG157300 Rh7DG153100
rosa_wichuraiana	Rw7G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	71, 76, 230, 233
AfaI	GTAC	2 cut(s)	20, 90
AjnI	CCWGG	1 cut(s)	80
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw26I	GTCTC	2 cut(s)	55, 126
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	77, 216
ApeKI	GCWGC	2 cut(s)	25, 159
AspS9I	GGNCC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	37, 146
BciT130I	CCWGG	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	55, 126
BfaI	CTAG	1 cut(s)	238
BisI	GCNGC	4 cut(s)	26, 77, 160, 231
BlsI	GCNGC	4 cut(s)	27, 78, 161, 232
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	82
BsaJI	CCNNGG	3 cut(s)	66, 80, 219
BsaWI	WCCGGW	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	82
BseDI	CCNNGG	3 cut(s)	66, 80, 219
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	37, 146
BshFI	GGCC	2 cut(s)	79, 218
BsiSI	CCGG	2 cut(s)	31, 143
BsmAI	GTCTC	2 cut(s)	55, 126
BsmBI	CGTCTC	2 cut(s)	55, 126
BsnI	GGCC	2 cut(s)	79, 218
Bsp1407I	TGTACA	1 cut(s)	88
BspACI	CCGC	4 cut(s)	71, 76, 230, 233
BspANI	GGCC	2 cut(s)	79, 218
BsrGI	TGTACA	1 cut(s)	88
BssECI	CCNNGG	3 cut(s)	66, 80, 219
Bst2UI	CCWGG	1 cut(s)	82
BstAUI	TGTACA	1 cut(s)	88
BstMAI	GTCTC	2 cut(s)	55, 126
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	37, 146
BsuRI	GGCC	2 cut(s)	79, 218
BtsIMutI	CAGTG	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	19, 89
CviJI	RGCY	7 cut(s)	11, 46, 65, 79, 142, 159, 218
CviKI_1	RGCY	7 cut(s)	11, 46, 65, 79, 142, 159, 218
CviQI	GTAC	2 cut(s)	19, 89
EcoRII	CCWGG	1 cut(s)	80
Esp3I	CGTCTC	2 cut(s)	55, 126
FaiI	YATR	1 cut(s)	180
Fnu4HI	GCNGC	4 cut(s)	26, 77, 160, 231
Fsp4HI	GCNGC	4 cut(s)	26, 77, 160, 231
FspBI	CTAG	1 cut(s)	238
GluI	GCNGC	4 cut(s)	26, 77, 160, 231
HaeIII	GGCC	2 cut(s)	79, 218
HapII	CCGG	2 cut(s)	31, 143
HinfI	GANTC	5 cut(s)	4, 34, 122, 146, 200
HpaII	CCGG	2 cut(s)	31, 143
Hpy188I	TCNGA	1 cut(s)	61
LpnPI	CCDG	6 cut(s)	21, 44, 67, 94, 156, 176
Lsp1109I	GCAGC	2 cut(s)	37, 146
MaeI	CTAG	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	145
MluCI	AATT	2 cut(s)	55, 112
MlyI	GAGTC	2 cut(s)	155, 209
MnlI	CCTC	5 cut(s)	61, 204, 208, 214, 217
MspI	CCGG	2 cut(s)	31, 143
MspR9I	CCNGG	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	82
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PfeI	GAWTC	3 cut(s)	4, 34, 122
PkrI	GCNGC	4 cut(s)	27, 78, 161, 232
PleI	GAGTC	2 cut(s)	154, 208
PpsI	GAGTC	2 cut(s)	154, 208
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	104
RsaI	GTAC	2 cut(s)	20, 90
RsaNI	GTAC	2 cut(s)	19, 89
SatI	GCNGC	4 cut(s)	26, 77, 160, 231
Sau96I	GGNCC	1 cut(s)	78
ScaI	AGTACT	1 cut(s)	20
SchI	GAGTC	2 cut(s)	155, 209
ScrFI	CCNGG	1 cut(s)	82
SetI	ASST	2 cut(s)	48, 228
Sse9I	AATT	2 cut(s)	55, 112
SsiI	CCGC	4 cut(s)	71, 76, 230, 233
SspMI	CTAG	1 cut(s)	238
StyD4I	CCNGG	1 cut(s)	80
TaqI	TCGA	2 cut(s)	194, 209
TasI	AATT	2 cut(s)	55, 112
TatI	WGTACW	2 cut(s)	18, 88
TauI	GCSGC	2 cut(s)	79, 233
TfiI	GAWTC	3 cut(s)	4, 34, 122
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	25, 159
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	109
XspI	CTAG	1 cut(s)	238
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.