Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000473.1

Orthogroup ID

OG0006029

Physical Location & Seq

Genomic Coordinates Reverse (-)

132521 .. 135244

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000473.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgatgaaagtacaggctgaccgccaccgccgcctcctaggcctccctcgaacacgactcaatcgaaatctcattcacatacttcttcactctctggcggccgaagaacggctcctgcttgtcgtcgctggaggaatcggtggcttcgccgtcagtgacggaaatctgtacaatcctgggtcgcaccgcctccgcttcagaattagaaacgagcttggggtgattccaacgccagaatccggtcaccagtccggtagctggattcctgattcctgtgaccgatcaccgaattccgaccccaagctcgtttctaattctgaagcggaggcggtgcgacccaggattgtacagatttccgtcactgacggcgaagccaccgattcctccagcgacgacaagcaggagccgttcttcggccgccagagagtgaagaagtatgtgaatgagatttcgattgagtcgtgttcgagggaggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

159

Amino Acids

17.67

Weight (kDa)

8.71

Isoelectric Point (pI)

54.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11140 AT4G23750 AT4G23750
fragaria_vesca	FvH4_5g03920
malus_domestica	MD02G1220900.v1.1 MD06G1100500.v1.1 MD14G1120000.v1.1
prunus_persica	Prupe.5G114100_v2.0.a1
pyrus_communis	pycom06g09580
rosa_chinensis	RchiOBHm_Chr7g0195581
rosa_laevigata	RLG00000004107
rosa_multiflora	Rmu_co7992594.1_g000001 Rmu_sc0000487.1_g000064 Rmu_sc0004073.1_g000001 Rmu_ssc0000078.1_g000008 Rmu_ssc0000473.1_g000022
rosa_roxburghii	Rroxscaffold_3G00260330
rosa_rugosa	Rorug07G0024400
rosa_samantha	Rh4AG072300 Rh4AG073100 Rh4BG070300 Rh4CG078700 Rh7AG152100 Rh7BG153800 Rh7CG157300 Rh7DG153100
rosa_wichuraiana	Rw7G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	22, 28, 31, 98, 187, 193, 323, 329, 418
AcoI	YGGCCR	2 cut(s)	99, 415
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	2 cut(s)	181, 339
AfaI	GTAC	3 cut(s)	12, 170, 348
AfiI	CCNNNNNNNGG	4 cut(s)	108, 239, 258, 413
AjnI	CCWGG	2 cut(s)	175, 338
AluBI	AGCT	3 cut(s)	214, 258, 304
AluI	AGCT	3 cut(s)	214, 258, 304
AoxI	GGCC	4 cut(s)	40, 99, 415, 474
ApoI	RAATTY	1 cut(s)	289
AspA2I	CCTAGG	1 cut(s)	37
AsuHPI	GGTGA	3 cut(s)	232, 236, 276
AvrII	CCTAGG	1 cut(s)	37
BceAI	ACGGC	4 cut(s)	125, 134, 382, 391
BciT130I	CCWGG	2 cut(s)	177, 340
BfaI	CTAG	2 cut(s)	38, 478
BglI	GCCNNNNNGGC	1 cut(s)	39
BisI	GCNGC	3 cut(s)	31, 99, 418
BlnI	CCTAGG	1 cut(s)	37
BlsI	GCNGC	3 cut(s)	32, 100, 419
Bme1390I	CCNGG	2 cut(s)	177, 340
BmiI	GGNNCC	2 cut(s)	113, 405
BmrFI	CCNGG	2 cut(s)	177, 340
BpmI	CTGGAG	2 cut(s)	150, 370
BsaJI	CCNNGG	3 cut(s)	37, 176, 338
BsaWI	WCCGGW	2 cut(s)	239, 251
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 239, 258, 413
Bse1I	ACTGG	1 cut(s)	247
BseBI	CCWGG	2 cut(s)	177, 340
BseDI	CCNNGG	3 cut(s)	37, 176, 338
BseLI	CCNNNNNNNGG	4 cut(s)	108, 239, 258, 413
BseNI	ACTGG	1 cut(s)	247
BseX3I	CGGCCG	2 cut(s)	99, 415
Bsh1285I	CGRYCG	2 cut(s)	102, 418
BshFI	GGCC	4 cut(s)	42, 101, 417, 476
BsiEI	CGRYCG	2 cut(s)	102, 418
BsiSI	CCGG	2 cut(s)	240, 252
BslI	CCNNNNNNNGG	4 cut(s)	108, 239, 258, 413
BsnI	GGCC	4 cut(s)	42, 101, 417, 476
Bsp1407I	TGTACA	2 cut(s)	168, 346
Bsp143I	GATC	1 cut(s)	281
BspACI	CCGC	9 cut(s)	22, 28, 31, 98, 187, 193, 323, 329, 418
BspANI	GGCC	4 cut(s)	42, 101, 417, 476
BspLI	GGNNCC	2 cut(s)	113, 405
BsrGI	TGTACA	2 cut(s)	168, 346
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	3 cut(s)	37, 176, 338
BssMI	GATC	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	37
Bst2UI	CCWGG	2 cut(s)	177, 340
BstAUI	TGTACA	2 cut(s)	168, 346
BstEII	GGTNACC	1 cut(s)	242
BstKTI	GATC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	281
BstMCI	CGRYCG	2 cut(s)	102, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 39
BstNI	CCWGG	2 cut(s)	177, 340
BstPI	GGTNACC	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	175, 338
BstZI	CGGCCG	2 cut(s)	99, 415
BsuRI	GGCC	4 cut(s)	42, 101, 417, 476
BtsIMutI	CAGTG	2 cut(s)	160, 360
Csp6I	GTAC	3 cut(s)	11, 169, 347
CviQI	GTAC	3 cut(s)	11, 169, 347
DpnI	GATC	1 cut(s)	283
DpnII	GATC	1 cut(s)	281
EaeI	YGGCCR	2 cut(s)	99, 415
EagI	CGGCCG	2 cut(s)	99, 415
EclXI	CGGCCG	2 cut(s)	99, 415
Eco130I	CCWWGG	1 cut(s)	37
Eco147I	AGGCCT	2 cut(s)	42, 476
Eco52I	CGGCCG	2 cut(s)	99, 415
Eco57I	CTGAAG	2 cut(s)	181, 339
Eco91I	GGTNACC	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	2 cut(s)	175, 338
EcoT14I	CCWWGG	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	37
FaiI	YATR	2 cut(s)	80, 438
Fnu4HI	GCNGC	3 cut(s)	31, 99, 418
Fsp4HI	GCNGC	3 cut(s)	31, 99, 418
FspBI	CTAG	2 cut(s)	38, 478
GluI	GCNGC	3 cut(s)	31, 99, 418
GsuI	CTGGAG	2 cut(s)	150, 370
HaeIII	GGCC	4 cut(s)	42, 101, 417, 476
HapII	CCGG	2 cut(s)	240, 252
HinfI	GANTC	8 cut(s)	57, 135, 223, 236, 262, 269, 380, 458
HpaII	CCGG	2 cut(s)	240, 252
HphI	GGTGA	3 cut(s)	232, 236, 276
Hpy188I	TCNGA	3 cut(s)	200, 295, 319
Hpy188III	TCNNGA	1 cut(s)	266
Hpy99I	CGWCG	2 cut(s)	128, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 39
Kzo9I	GATC	1 cut(s)	281
LmnI	GCTCC	2 cut(s)	117, 403
MaeI	CTAG	2 cut(s)	38, 478
MaeIII	GTNAC	4 cut(s)	155, 242, 275, 358
MalI	GATC	1 cut(s)	283
MboI	GATC	1 cut(s)	281
MboII	GAAGA	4 cut(s)	77, 116, 403, 442
MluCI	AATT	3 cut(s)	201, 289, 313
MlyI	GAGTC	2 cut(s)	51, 467
MmeI	TCCRAC	2 cut(s)	251, 318
MnlI	CCTC	9 cut(s)	44, 53, 57, 125, 200, 319, 394, 462, 466
MspI	CCGG	2 cut(s)	240, 252
MspR9I	CCNGG	2 cut(s)	177, 340
MvaI	CCWGG	2 cut(s)	177, 340
MwoI	GCNNNNNNNGC	2 cut(s)	30, 39
NdeII	GATC	1 cut(s)	281
NlaIV	GGNNCC	2 cut(s)	113, 405
NmuCI	GTSAC	4 cut(s)	155, 242, 275, 358
PceI	AGGCCT	2 cut(s)	42, 476
PcsI	WCGNNNNNNNCGW	2 cut(s)	61, 458
PfeI	GAWTC	6 cut(s)	135, 223, 236, 262, 269, 380
PkrI	GCNGC	3 cut(s)	32, 100, 419
PleI	GAGTC	2 cut(s)	51, 466
PpsI	GAGTC	2 cut(s)	51, 466
Psp6I	CCWGG	2 cut(s)	175, 338
PspEI	GGTNACC	1 cut(s)	242
PspGI	CCWGG	2 cut(s)	175, 338
PspN4I	GGNNCC	2 cut(s)	113, 405
RsaI	GTAC	3 cut(s)	12, 170, 348
RsaNI	GTAC	3 cut(s)	11, 169, 347
SatI	GCNGC	3 cut(s)	31, 99, 418
Sau3AI	GATC	1 cut(s)	281
SchI	GAGTC	2 cut(s)	51, 467
ScrFI	CCNGG	2 cut(s)	177, 340
SetI	ASST	3 cut(s)	216, 260, 306
Sse9I	AATT	3 cut(s)	201, 289, 313
SseBI	AGGCCT	2 cut(s)	42, 476
SsiI	CCGC	9 cut(s)	22, 28, 31, 98, 187, 193, 323, 329, 418
SspMI	CTAG	2 cut(s)	38, 478
StuI	AGGCCT	2 cut(s)	42, 476
StyD4I	CCNGG	2 cut(s)	175, 338
StyI	CCWWGG	1 cut(s)	37
TaqI	TCGA	4 cut(s)	49, 64, 452, 467
TaqII	GACCGA	1 cut(s)	294
TasI	AATT	3 cut(s)	201, 289, 313
TatI	WGTACW	3 cut(s)	10, 168, 346
TauI	GCSGC	3 cut(s)	33, 101, 420
TfiI	GAWTC	6 cut(s)	135, 223, 236, 262, 269, 380
TscAI	CASTG	2 cut(s)	160, 367
TseFI	GTSAC	4 cut(s)	155, 242, 275, 358
Tsp45I	GTSAC	4 cut(s)	155, 242, 275, 358
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	2 cut(s)	174, 346
TspRI	CASTG	2 cut(s)	160, 367
XapI	RAATTY	1 cut(s)	289
XmaJI	CCTAGG	1 cut(s)	37
XspI	CTAG	2 cut(s)	38, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.