RLG00000004107

ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
56269235 .. 56270239
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004107

Sequence Viewer

Length: 1005 bp
ATGAATCCAGCCGTCAAGTACTCGCAGCACCGGAACCACACCAAGCTCGTCTCTAATTCCGAAGCCGAGGCGGTGCGGCCCAGGATTGTACGGATTTCCGTCACTGACGGCGACGCCACCGATTCCTCCAGCGACGACGAGCCGGAGGCGTTCTTCGGGCGCCAGAGAGTGAAGAAGTATGTGAATGAGATTTCGATTGAGTCGTGTTCGAGGGAGGCCGAGGAGGCGGAGGCGGCGGCGGTCTGGAAGAGCAGGACCTCGAGGACGGTCAGGAAGAAGCCCGCCGGAAAACCGGCGACTCACCGGACGTTGAAGCCCGCGCCCGGGAAGAAGTTCCGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAAATCAGAGACCCGTTCAGGCGAGTACGGCTCTGGTTGGGTACGTACGACACGGCTGAGGAAGCGGCTATGGTGTACGACAACGCGGCCATCCAGCTGCGTGGACCTCACGCGCTCACCAACTTCCACTCTCCTCCGGCGGTCAAGTCCGAGGGGGAGGAGCGCGAGGCCGAGGCCGACATTATGTCCGACGTTAAGCCGGTCGTCAGTTACGGCTACAATTCCGGCGAGGAGTCACACAACACTATCTGCTCCCCAACCTCCGTGCTCCGCTGTCCCTCGCCGTCAAACGAAGACGACTCGTCGTCGCCGAGTCCCAAACAACAACCTCAACAGCAACTCGAAGTCCGGGAAGACTCTTGTGTTTCCGAGAACTTCTCGGAGCTGTCCGACCACACCAGCTTCGAGAGCTTCATTCCAAACGACATCTTCGATTTCCAGACGACAATACCTGACTTCTTCGAAGAGACCAGTGTTTTCAAAGAAAGCTTCTGCGATTTCGAAAATTTCGGCGACATCTTCGCCGATTCGGCTATGGATTTCGGGTTCGGATCCTCCACCACCACAACCTGCGACTATTTCCAAGACATCGGCGACCTCTTTGCCTCCGACCCTCTTGTTGCTTTATGA

Protein Analysis

335

Amino Acids

37.34

Weight (kDa)

4.92

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 111 - 160 3e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 259
Acc36I ACCTGC 1 cut(s) 953
AccB1I GGYRCC 1 cut(s) 159
AccII CGCG 4 cut(s) 320, 461, 488, 540
AclWI GGATC 2 cut(s) 921, 934
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 1 cut(s) 880
AcyI GRCGYC 2 cut(s) 114, 160
AfaI GTAC 6 cut(s) 20, 90, 402, 418, 422, 452
AfiI CCNNNNNNNGG 2 cut(s) 323, 324
AgsI TTSAA 2 cut(s) 313, 856
AhdI GACNNNNNGTC 3 cut(s) 559, 676, 679
AjnI CCWGG 1 cut(s) 80
AloI GAACNNNNNNTCC 2 cut(s) 905, 937
AluBI AGCT 6 cut(s) 46, 472, 760, 777, 786, 864
AluI AGCT 6 cut(s) 46, 472, 760, 777, 786, 864
Alw21I GWGCWC 1 cut(s) 645
Alw26I GTCTC 3 cut(s) 55, 378, 836
AlwI GGATC 2 cut(s) 921, 934
Ama87I CYCGRG 2 cut(s) 259, 323
AoxI GGCC 6 cut(s) 77, 216, 353, 462, 543, 549
ApeKI GCWGC 2 cut(s) 25, 472
ApoI RAATTY 1 cut(s) 880
Asp700I GAANNNNTTC 1 cut(s) 332
AspLEI GCGC 4 cut(s) 162, 322, 490, 540
AspS9I GGNCC 3 cut(s) 78, 255, 479
AsuC2I CCSGG 4 cut(s) 324, 325, 338, 725
AsuHPI GGTGA 2 cut(s) 293, 484
AsuII TTCGAA 2 cut(s) 837, 876
AvaI CYCGRG 2 cut(s) 259, 323
AvaII GGWCC 2 cut(s) 255, 479
BamHI GGATCC 1 cut(s) 926
BanI GGYRCC 1 cut(s) 159
BbsI GAAGAC 2 cut(s) 675, 735
Bbv12I GWGCWC 1 cut(s) 645
BbvCI CCTCAGC 1 cut(s) 432
BbvI GCAGC 2 cut(s) 37, 459
BccI CCATC 1 cut(s) 473
BceAI ACGGC 6 cut(s) 124, 340, 419, 444, 604, 643
BcgI CGANNNNNNTGC 2 cut(s) 959, 993
BciT130I CCWGG 1 cut(s) 82
BcnI CCSGG 4 cut(s) 324, 325, 338, 725
BcoDI GTCTC 3 cut(s) 55, 378, 836
BfoI RGCGCY 1 cut(s) 163
BfuAI ACCTGC 1 cut(s) 953
BglI GCCNNNNNGGC 2 cut(s) 224, 905
BisI GCNGC 8 cut(s) 26, 77, 234, 237, 372, 441, 462, 473
BlsI GCNGC 8 cut(s) 27, 78, 235, 238, 373, 442, 463, 474
BmcAI AGTACT 1 cut(s) 20
Bme1390I CCNGG 5 cut(s) 82, 324, 325, 338, 725
Bme18I GGWCC 2 cut(s) 255, 479
BmeRI GACNNNNNGTC 3 cut(s) 559, 676, 679
BmeT110I CYCGRG 2 cut(s) 259, 323
BmgT120I GGNCC 3 cut(s) 78, 255, 479
BmiI GGNNCC 3 cut(s) 35, 161, 928
BmrFI CCNGG 5 cut(s) 82, 324, 325, 338, 725
BpiI GAAGAC 2 cut(s) 675, 735
BplI GAGNNNNNCTC 4 cut(s) 390, 422, 737, 769
BpmI CTGGAG 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 432
Bpu14I TTCGAA 2 cut(s) 837, 876
BpuMI CCSGG 4 cut(s) 324, 325, 338, 725
BsaAI YACGTR 1 cut(s) 420
BsaHI GRCGYC 2 cut(s) 114, 160
BsaI GGTCTC 2 cut(s) 378, 836
BsaJI CCNNGG 8 cut(s) 66, 80, 219, 323, 337, 356, 525, 546
BsaWI WCCGGW 2 cut(s) 30, 303
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 324
Bse118I RCCGGY 2 cut(s) 292, 574
Bse1I ACTGG 1 cut(s) 846
BseBI CCWGG 1 cut(s) 82
BseDI CCNNGG 8 cut(s) 66, 80, 219, 323, 337, 356, 525, 546
BseGI GGATG 1 cut(s) 465
BseLI CCNNNNNNNGG 2 cut(s) 323, 324
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 1 cut(s) 846
BseRI GAGGAG 4 cut(s) 236, 498, 548, 620
BseXI GCAGC 2 cut(s) 37, 459
Bsh1236I CGCG 4 cut(s) 320, 461, 488, 540
Bsh1285I CGRYCG 1 cut(s) 579
BshFI GGCC 6 cut(s) 79, 218, 355, 464, 545, 551
BshNI GGYRCC 1 cut(s) 159
BsiEI CGRYCG 1 cut(s) 579
BsiHKAI GWGCWC 1 cut(s) 645
BsiHKCI CYCGRG 2 cut(s) 259, 323
BsiWI CGTACG 1 cut(s) 420
BslFI GGGAC 2 cut(s) 636, 675
BslI CCNNNNNNNGG 2 cut(s) 323, 324
BsmAI GTCTC 3 cut(s) 55, 378, 836
BsmBI CGTCTC 1 cut(s) 55
BsmFI GGGAC 2 cut(s) 636, 675
BsnI GGCC 6 cut(s) 79, 218, 355, 464, 545, 551
Bso31I GGTCTC 2 cut(s) 378, 836
BsoBI CYCGRG 2 cut(s) 259, 323
Bsp119I TTCGAA 2 cut(s) 837, 876
Bsp1286I GDGCHC 1 cut(s) 645
Bsp143I GATC 1 cut(s) 926
BspANI GGCC 6 cut(s) 79, 218, 355, 464, 545, 551
BspCNI CTCAG 1 cut(s) 424
BspFNI CGCG 4 cut(s) 320, 461, 488, 540
BspLI GGNNCC 3 cut(s) 35, 161, 928
BspMI ACCTGC 1 cut(s) 953
BspPI GGATC 2 cut(s) 921, 934
BspQI GCTCTTC 1 cut(s) 242
BspT104I TTCGAA 2 cut(s) 837, 876
BspT107I GGYRCC 1 cut(s) 159
BspTNI GGTCTC 2 cut(s) 378, 836
BsrFI RCCGGY 2 cut(s) 292, 574
BsrI ACTGG 1 cut(s) 846
BssAI RCCGGY 2 cut(s) 292, 574
BssECI CCNNGG 8 cut(s) 66, 80, 219, 323, 337, 356, 525, 546
BssMI GATC 1 cut(s) 926
BssNI GRCGYC 2 cut(s) 114, 160
Bst2UI CCWGG 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 2 cut(s) 242, 834
BstACI GRCGYC 2 cut(s) 114, 160
BstBAI YACGTR 1 cut(s) 420
BstBI TTCGAA 2 cut(s) 837, 876
BstC8I GCNNGC 2 cut(s) 282, 318
BstDEI CTNAG 1 cut(s) 432
BstDSI CCRYGG 1 cut(s) 356
BstF5I GGATG 1 cut(s) 465
BstFNI CGCG 4 cut(s) 320, 461, 488, 540
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 4 cut(s) 162, 322, 490, 540
BstKTI GATC 1 cut(s) 929
BstMAI GTCTC 3 cut(s) 55, 378, 836
BstMBI GATC 1 cut(s) 926
BstMCI CGRYCG 1 cut(s) 579
BstMWI GCNNNNNNNGC 6 cut(s) 224, 233, 403, 437, 783, 905
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 5 cut(s) 80, 322, 323, 336, 723
BstSNI TACGTA 1 cut(s) 420
BstUI CGCG 4 cut(s) 320, 461, 488, 540
BstV1I GCAGC 2 cut(s) 37, 459
BstV2I GAAGAC 2 cut(s) 675, 735
BstX2I RGATCY 1 cut(s) 926
BstXI CCANNNNNNTGG 1 cut(s) 476
BstYI RGATCY 1 cut(s) 926
BsuRI GGCC 6 cut(s) 79, 218, 355, 464, 545, 551
BtgI CCRYGG 1 cut(s) 356
BtsCI GGATG 1 cut(s) 465
BtsIMutI CAGTG 2 cut(s) 102, 853
BveI ACCTGC 1 cut(s) 953
Cac8I GCNNGC 2 cut(s) 282, 318
CfoI GCGC 4 cut(s) 162, 322, 490, 540
Cfr10I RCCGGY 2 cut(s) 292, 574
Cfr13I GGNCC 3 cut(s) 78, 255, 479
Cfr9I CCCGGG 1 cut(s) 323
CseI GACGC 1 cut(s) 122
Csp6I GTAC 6 cut(s) 19, 89, 401, 417, 421, 451
CviQI GTAC 6 cut(s) 19, 89, 401, 417, 421, 451
DdeI CTNAG 1 cut(s) 432
DinI GGCGCC 1 cut(s) 161
DpnI GATC 1 cut(s) 928
DpnII GATC 1 cut(s) 926
DriI GACNNNNNGTC 3 cut(s) 559, 676, 679
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 2 cut(s) 242, 834
Eam1105I GACNNNNNGTC 3 cut(s) 559, 676, 679
EarI CTCTTC 2 cut(s) 242, 834
EciI GGCGGA 2 cut(s) 242, 389
Eco105I TACGTA 1 cut(s) 420
Eco31I GGTCTC 2 cut(s) 378, 836
Eco47I GGWCC 2 cut(s) 255, 479
Eco88I CYCGRG 2 cut(s) 259, 323
EcoO109I RGGNCCY 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 80
EgeI GGCGCC 1 cut(s) 161
EheI GGCGCC 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 55
FaiI YATR 5 cut(s) 180, 446, 560, 911, 1003
FaqI GGGAC 2 cut(s) 636, 675
FauI CCCGC 2 cut(s) 289, 325
Fnu4HI GCNGC 8 cut(s) 26, 77, 234, 237, 372, 441, 462, 473
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 8 cut(s) 26, 77, 234, 237, 372, 441, 462, 473
GlaI GCGC 4 cut(s) 161, 321, 489, 539
GluI GCNGC 8 cut(s) 26, 77, 234, 237, 372, 441, 462, 473
GsuI CTGGAG 1 cut(s) 112
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 6 cut(s) 79, 218, 355, 464, 545, 551
HgaI GACGC 1 cut(s) 122
HhaI GCGC 4 cut(s) 162, 322, 490, 540
Hin1I GRCGYC 2 cut(s) 114, 160
Hin6I GCGC 4 cut(s) 160, 320, 488, 538
HinP1I GCGC 4 cut(s) 160, 320, 488, 538
HindIII AAGCTT 1 cut(s) 862
HinfI GANTC 9 cut(s) 4, 122, 200, 298, 608, 674, 688, 731, 902
HphI GGTGA 2 cut(s) 293, 484
Hpy166II GTNNAC 2 cut(s) 451, 479
Hpy188I TCNGA 9 cut(s) 61, 383, 526, 565, 745, 757, 766, 926, 985
Hpy188III TCNNGA 4 cut(s) 244, 271, 781, 814
Hpy8I GTNNAC 2 cut(s) 451, 479
Hpy99I CGWCG 6 cut(s) 116, 137, 140, 569, 682, 685
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 3 cut(s) 308, 419, 567
HpyF10VI GCNNNNNNNGC 6 cut(s) 224, 233, 403, 437, 783, 905
HpyF3I CTNAG 1 cut(s) 432
HpySE526I ACGT 3 cut(s) 308, 419, 567
Hsp92I GRCGYC 2 cut(s) 114, 160
HspAI GCGC 4 cut(s) 160, 320, 488, 538
KasI GGCGCC 1 cut(s) 159
Kzo9I GATC 1 cut(s) 926
LguI GCTCTTC 1 cut(s) 242
LmnI GCTCC 4 cut(s) 535, 632, 648, 757
Lsp1109I GCAGC 2 cut(s) 37, 459
MaeII ACGT 3 cut(s) 308, 419, 567
MaeIII GTNAC 3 cut(s) 100, 584, 609
MalI GATC 1 cut(s) 928
MboI GATC 1 cut(s) 926
MflI RGATCY 1 cut(s) 926
MhlI GDGCHC 1 cut(s) 645
MluCI AATT 3 cut(s) 55, 595, 880
Mly113I GGCGCC 1 cut(s) 160
MlyI GAGTC 6 cut(s) 209, 292, 617, 668, 697, 725
MmeI TCCRAC 2 cut(s) 588, 789
MroXI GAANNNNTTC 1 cut(s) 332
MseI TTAA 1 cut(s) 570
MspA1I CMGCKG 2 cut(s) 472, 648
MspR9I CCNGG 5 cut(s) 82, 324, 325, 338, 725
MvaI CCWGG 1 cut(s) 82
MvnI CGCG 4 cut(s) 320, 461, 488, 540
MwoI GCNNNNNNNGC 6 cut(s) 224, 233, 403, 437, 783, 905
NarI GGCGCC 1 cut(s) 160
NciI CCSGG 4 cut(s) 324, 325, 338, 725
NdeII GATC 1 cut(s) 926
NlaIV GGNNCC 3 cut(s) 35, 161, 928
NmeAIII GCCGAG 4 cut(s) 91, 244, 571, 711
NmuCI GTSAC 2 cut(s) 100, 609
NspV TTCGAA 2 cut(s) 837, 876
PaeR7I CTCGAG 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 242
PcsI WCGNNNNNNNCGW 3 cut(s) 200, 683, 804
PdmI GAANNNNTTC 1 cut(s) 332
PfeI GAWTC 3 cut(s) 4, 122, 902
Pfl23II CGTACG 1 cut(s) 420
PfoI TCCNGGA 1 cut(s) 723
PkrI GCNGC 8 cut(s) 27, 78, 235, 238, 373, 442, 463, 474
PleI GAGTC 6 cut(s) 208, 292, 616, 668, 696, 725
PluTI GGCGCC 1 cut(s) 163
PpsI GAGTC 6 cut(s) 208, 292, 616, 668, 696, 725
Ppu21I YACGTR 1 cut(s) 420
PpuMI RGGWCCY 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PspLI CGTACG 1 cut(s) 420
PspN4I GGNNCC 3 cut(s) 35, 161, 928
PspPI GGNCC 3 cut(s) 78, 255, 479
PspPPI RGGWCCY 1 cut(s) 255
PspXI VCTCGAGB 1 cut(s) 259
PsuI RGATCY 1 cut(s) 926
PvuII CAGCTG 1 cut(s) 472
RsaI GTAC 6 cut(s) 20, 90, 402, 418, 422, 452
RsaNI GTAC 6 cut(s) 19, 89, 401, 417, 421, 451
SapI GCTCTTC 1 cut(s) 242
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 8 cut(s) 26, 77, 234, 237, 372, 441, 462, 473
Sau3AI GATC 1 cut(s) 926
Sau96I GGNCC 3 cut(s) 78, 255, 479
ScaI AGTACT 1 cut(s) 20
SchI GAGTC 6 cut(s) 209, 292, 617, 668, 697, 725
ScrFI CCNGG 5 cut(s) 82, 324, 325, 338, 725
SduI GDGCHC 1 cut(s) 645
SfoI GGCGCC 1 cut(s) 161
Sfr274I CTCGAG 1 cut(s) 259
SfuI TTCGAA 2 cut(s) 837, 876
SinI GGWCC 2 cut(s) 255, 479
SlaI CTCGAG 1 cut(s) 259
SmaI CCCGGG 1 cut(s) 325
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
SnaBI TACGTA 1 cut(s) 420
Sse9I AATT 3 cut(s) 55, 595, 880
SspDI GGCGCC 1 cut(s) 159
StyD4I CCNGG 5 cut(s) 80, 322, 323, 336, 723
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 3 cut(s) 311, 422, 570
TaqI TCGA 8 cut(s) 194, 209, 260, 717, 780, 807, 837, 876
TasI AATT 3 cut(s) 55, 595, 880
TatI WGTACW 1 cut(s) 18
TauI GCSGC 6 cut(s) 79, 236, 239, 374, 443, 464
TfiI GAWTC 3 cut(s) 4, 122, 902
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TscAI CASTG 2 cut(s) 109, 853
TseFI GTSAC 2 cut(s) 100, 609
TseI GCWGC 2 cut(s) 25, 472
Tsp45I GTSAC 2 cut(s) 100, 609
TspDTI ATGAA 2 cut(s) 17, 778
TspGWI ACGGA 3 cut(s) 88, 106, 628
TspMI CCCGGG 1 cut(s) 323
TspRI CASTG 2 cut(s) 109, 853
VpaK11BI GGWCC 2 cut(s) 255, 479
XapI RAATTY 1 cut(s) 880
XhoI CTCGAG 1 cut(s) 259
XmaI CCCGGG 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 332
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.