Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006029

Physical Location & Seq

Genomic Coordinates Reverse (-)

12896704 .. 12898295

Gene Structure 1592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG157300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAATCCAGCCGTCAAGTACTCGCAGCACCGGAACCACACCAAGCTCGTCTCTAATTCCGAAGCCGAGGCGGTGCGGCCCAGGATTGTACGGATTTCCGTCACTGACGGCGACGCCACCGATTCCTCCAGCGACGACGAGCCCGAGGCGTTCTTCGGCCGCCAGAGAGTGAAGAAGTATGTGAATGAGATTTCGATTGAGTCGTGTTCCAGGGAGGCCGAGGACTCGGCGGCGGCGGTCTGGAAGAGCAGGACGTCGAGGACGGTGAGGAAGAAGGCCGCCGGAAAAACCGTGGTTCCGGCGACTCACCGGACTTTGAAGCCCGCGCCCGGGAAGAAGTTCCGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAAATCAGAGACCCGTTCAGGCGTGTACGGCTCTGGTTGGGTACGTACGATACGGCTGAGGAAGCGGCTATGGTGTACGACAACGCCGCCATCCAGCTGCGTGGACCTCACGCGCTCACCAACTTCCACTCTCCTCCGGCGGTCAAGTCCGAGCGCGAGGCCGACATTATGTCCAACGTTAAGCCGGTCGTCAGTTACGGCTACAATTCCGGCGAGGAGTCACACAACACTATCTGCTCCCCAACCTCCGTGCTCCGCTGTCCCTCGCCGTCAAACGAAGACGACTTGTCGTCGCCGAGTCCCAAACAACAACCTCAACAACAACTCGAAGTCCGGGAAGACTCTTGTGTTTCCGAGAACTTCTCGGAGCTCTCCGACCACACCAGCTTCGAGAGCTTCATTCCAAACGACATCTTCGATTTCCAGACGACAATACCTGACTTCTTGGAAGAGAGCAGTGTTTTCAAAGAAAGCTTCTGCGATTTCGGAAATTTTGGCGACATCTTCGCCGATTCGGCTGTGGATTTCGGGTTCGGATCCTCCGCCACCACAACCTGCGACTATTTCCAAGACATCGGCGACCTCTTTGCCTCCGACCCTCTTGTTGCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

331

Amino Acids

36.81

Weight (kDa)

5.22

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	113 - 162	3e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11140 AT4G23750 AT4G23750
fragaria_vesca	FvH4_5g03920
malus_domestica	MD02G1220900.v1.1 MD06G1100500.v1.1 MD14G1120000.v1.1
prunus_persica	Prupe.5G114100_v2.0.a1
pyrus_communis	pycom06g09580
rosa_chinensis	RchiOBHm_Chr7g0195581
rosa_laevigata	RLG00000004107
rosa_multiflora	Rmu_co7992594.1_g000001 Rmu_sc0000487.1_g000064 Rmu_sc0004073.1_g000001 Rmu_ssc0000078.1_g000008 Rmu_ssc0000473.1_g000022
rosa_roxburghii	Rroxscaffold_3G00260330
rosa_rugosa	Rorug07G0024400
rosa_samantha	Rh4AG072300 Rh4AG073100 Rh4BG070300 Rh4CG078700 Rh7AG152100 Rh7BG153800 Rh7CG157300 Rh7DG153100
rosa_wichuraiana	Rw7G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	944
AccII	CGCG	3 cut(s)	326, 494, 537
AclI	AACGTT	1 cut(s)	558
AclWI	GGATC	2 cut(s)	912, 925
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	871
AcyI	GRCGYC	2 cut(s)	114, 254
AfaI	GTAC	6 cut(s)	20, 90, 408, 424, 428, 458
AfiI	CCNNNNNNNGG	2 cut(s)	329, 330
AgsI	TTSAA	2 cut(s)	319, 847
AhdI	GACNNNNNGTC	3 cut(s)	550, 667, 670
AjnI	CCWGG	2 cut(s)	80, 209
AloI	GAACNNNNNNTCC	2 cut(s)	896, 928
AluBI	AGCT	6 cut(s)	46, 478, 751, 768, 777, 855
AluI	AGCT	6 cut(s)	46, 478, 751, 768, 777, 855
Alw21I	GWGCWC	2 cut(s)	636, 753
Alw26I	GTCTC	2 cut(s)	55, 384
AlwI	GGATC	2 cut(s)	912, 925
Ama87I	CYCGRG	2 cut(s)	143, 329
AoxI	GGCC	6 cut(s)	77, 157, 216, 276, 359, 540
ApeKI	GCWGC	2 cut(s)	25, 478
ApoI	RAATTY	1 cut(s)	871
Asp700I	GAANNNNTTC	1 cut(s)	338
AspLEI	GCGC	3 cut(s)	328, 496, 537
AspS9I	GGNCC	2 cut(s)	78, 485
AsuC2I	CCSGG	4 cut(s)	330, 331, 344, 716
AsuHPI	GGTGA	3 cut(s)	277, 299, 490
AvaI	CYCGRG	2 cut(s)	143, 329
AvaII	GGWCC	1 cut(s)	485
BamHI	GGATCC	1 cut(s)	917
BanII	GRGCYC	2 cut(s)	144, 753
BbsI	GAAGAC	2 cut(s)	666, 726
Bbv12I	GWGCWC	2 cut(s)	636, 753
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	37, 465
BccI	CCATC	1 cut(s)	479
BceAI	ACGGC	6 cut(s)	124, 346, 425, 450, 595, 634
BcgI	CGANNNNNNTGC	2 cut(s)	950, 984
BciT130I	CCWGG	2 cut(s)	82, 211
BcnI	CCSGG	4 cut(s)	330, 331, 344, 716
BcoDI	GTCTC	2 cut(s)	55, 384
BfuAI	ACCTGC	1 cut(s)	944
BglI	GCCNNNNNGGC	1 cut(s)	896
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	6 cut(s)	82, 211, 330, 331, 344, 716
Bme18I	GGWCC	1 cut(s)	485
BmeRI	GACNNNNNGTC	3 cut(s)	550, 667, 670
BmeT110I	CYCGRG	2 cut(s)	143, 329
BmgT120I	GGNCC	2 cut(s)	78, 485
BmiI	GGNNCC	3 cut(s)	35, 297, 919
BmrFI	CCNGG	6 cut(s)	82, 211, 330, 331, 344, 716
BpiI	GAAGAC	2 cut(s)	666, 726
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
BpmI	CTGGAG	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	438
BpuMI	CCSGG	4 cut(s)	330, 331, 344, 716
BsaAI	YACGTR	1 cut(s)	426
BsaHI	GRCGYC	2 cut(s)	114, 254
BsaI	GGTCTC	1 cut(s)	384
BsaJI	CCNNGG	9 cut(s)	66, 80, 144, 210, 219, 291, 329, 343, 362
BsaWI	WCCGGW	2 cut(s)	30, 309
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 330
Bse118I	RCCGGY	1 cut(s)	565
BseBI	CCWGG	2 cut(s)	82, 211
BseDI	CCNNGG	9 cut(s)	66, 80, 144, 210, 219, 291, 329, 343, 362
BseGI	GGATG	1 cut(s)	471
BseLI	CCNNNNNNNGG	2 cut(s)	329, 330
BseMII	CTCAG	1 cut(s)	429
BseRI	GAGGAG	2 cut(s)	504, 611
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	2 cut(s)	37, 465
Bsh1236I	CGCG	3 cut(s)	326, 494, 537
Bsh1285I	CGRYCG	2 cut(s)	160, 570
BshFI	GGCC	6 cut(s)	79, 159, 218, 278, 361, 542
BsiEI	CGRYCG	2 cut(s)	160, 570
BsiHKAI	GWGCWC	2 cut(s)	636, 753
BsiHKCI	CYCGRG	2 cut(s)	143, 329
BsiWI	CGTACG	1 cut(s)	426
BslFI	GGGAC	2 cut(s)	627, 666
BslI	CCNNNNNNNGG	2 cut(s)	329, 330
BsmAI	GTCTC	2 cut(s)	55, 384
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	627, 666
BsnI	GGCC	6 cut(s)	79, 159, 218, 278, 361, 542
Bso31I	GGTCTC	1 cut(s)	384
BsoBI	CYCGRG	2 cut(s)	143, 329
Bsp1286I	GDGCHC	3 cut(s)	144, 636, 753
Bsp143I	GATC	1 cut(s)	917
BspANI	GGCC	6 cut(s)	79, 159, 218, 278, 361, 542
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	3 cut(s)	326, 494, 537
BspLI	GGNNCC	3 cut(s)	35, 297, 919
BspMI	ACCTGC	1 cut(s)	944
BspPI	GGATC	2 cut(s)	912, 925
BspQI	GCTCTTC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	565
BssAI	RCCGGY	1 cut(s)	565
BssECI	CCNNGG	9 cut(s)	66, 80, 144, 210, 219, 291, 329, 343, 362
BssMI	GATC	1 cut(s)	917
BssNI	GRCGYC	2 cut(s)	114, 254
Bst2UI	CCWGG	2 cut(s)	82, 211
Bst4CI	ACNGT	2 cut(s)	265, 292
Bst6I	CTCTTC	2 cut(s)	239, 825
BstACI	GRCGYC	2 cut(s)	114, 254
BstBAI	YACGTR	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	438
BstDSI	CCRYGG	2 cut(s)	291, 362
BstF5I	GGATG	1 cut(s)	471
BstFNI	CGCG	3 cut(s)	326, 494, 537
BstHHI	GCGC	3 cut(s)	328, 496, 537
BstKTI	GATC	1 cut(s)	920
BstMAI	GTCTC	2 cut(s)	55, 384
BstMBI	GATC	1 cut(s)	917
BstMCI	CGRYCG	2 cut(s)	160, 570
BstMWI	GCNNNNNNNGC	4 cut(s)	409, 443, 774, 896
BstNI	CCWGG	2 cut(s)	82, 211
BstSCI	CCNGG	6 cut(s)	80, 209, 328, 329, 342, 714
BstSNI	TACGTA	1 cut(s)	426
BstUI	CGCG	3 cut(s)	326, 494, 537
BstV1I	GCAGC	2 cut(s)	37, 465
BstV2I	GAAGAC	2 cut(s)	666, 726
BstX2I	RGATCY	1 cut(s)	917
BstXI	CCANNNNNNTGG	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	917
BstZI	CGGCCG	1 cut(s)	157
BsuRI	GGCC	6 cut(s)	79, 159, 218, 278, 361, 542
BtgI	CCRYGG	2 cut(s)	291, 362
BtsCI	GGATG	1 cut(s)	471
BtsI	GCAGTG	1 cut(s)	844
BtsIMutI	CAGTG	2 cut(s)	102, 844
BveI	ACCTGC	1 cut(s)	944
Cac8I	GCNNGC	1 cut(s)	324
CfoI	GCGC	3 cut(s)	328, 496, 537
Cfr10I	RCCGGY	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	78, 485
Cfr9I	CCCGGG	1 cut(s)	329
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	6 cut(s)	19, 89, 407, 423, 427, 457
CviQI	GTAC	6 cut(s)	19, 89, 407, 423, 427, 457
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	1 cut(s)	919
DpnII	GATC	1 cut(s)	917
DriI	GACNNNNNGTC	3 cut(s)	550, 667, 670
EaeI	YGGCCR	1 cut(s)	157
EagI	CGGCCG	1 cut(s)	157
Eam1104I	CTCTTC	2 cut(s)	239, 825
Eam1105I	GACNNNNNGTC	3 cut(s)	550, 667, 670
EarI	CTCTTC	2 cut(s)	239, 825
EciI	GGCGGA	2 cut(s)	395, 913
Ecl136II	GAGCTC	1 cut(s)	751
EclXI	CGGCCG	1 cut(s)	157
Eco105I	TACGTA	1 cut(s)	426
Eco24I	GRGCYC	2 cut(s)	144, 753
Eco31I	GGTCTC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	485
Eco52I	CGGCCG	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	751
Eco88I	CYCGRG	2 cut(s)	143, 329
EcoICRI	GAGCTC	1 cut(s)	751
EcoRII	CCWGG	2 cut(s)	80, 209
EcoT38I	GRGCYC	2 cut(s)	144, 753
Esp3I	CGTCTC	1 cut(s)	55
FaiI	YATR	4 cut(s)	180, 452, 551, 994
FaqI	GGGAC	2 cut(s)	627, 666
FauI	CCCGC	1 cut(s)	331
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	2 cut(s)	144, 753
GlaI	GCGC	3 cut(s)	327, 495, 536
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	6 cut(s)	79, 159, 218, 278, 361, 542
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	3 cut(s)	328, 496, 537
Hin1I	GRCGYC	2 cut(s)	114, 254
Hin6I	GCGC	3 cut(s)	326, 494, 535
HinP1I	GCGC	3 cut(s)	326, 494, 535
HindIII	AAGCTT	1 cut(s)	853
HinfI	GANTC	9 cut(s)	4, 122, 200, 224, 304, 599, 679, 722, 893
HphI	GGTGA	3 cut(s)	277, 299, 490
Hpy166II	GTNNAC	3 cut(s)	407, 457, 485
Hpy188I	TCNGA	9 cut(s)	61, 389, 532, 736, 748, 757, 869, 917, 976
Hpy188III	TCNNGA	3 cut(s)	241, 772, 805
Hpy8I	GTNNAC	3 cut(s)	407, 457, 485
Hpy99I	CGWCG	5 cut(s)	116, 137, 140, 259, 676
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	2 cut(s)	265, 292
HpyCH4IV	ACGT	3 cut(s)	254, 425, 558
HpyF10VI	GCNNNNNNNGC	4 cut(s)	409, 443, 774, 896
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	3 cut(s)	254, 425, 558
Hsp92I	GRCGYC	2 cut(s)	114, 254
HspAI	GCGC	3 cut(s)	326, 494, 535
Kzo9I	GATC	1 cut(s)	917
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	3 cut(s)	623, 639, 748
Lsp1109I	GCAGC	2 cut(s)	37, 465
MaeII	ACGT	3 cut(s)	254, 425, 558
MaeIII	GTNAC	3 cut(s)	100, 575, 600
MalI	GATC	1 cut(s)	919
MboI	GATC	1 cut(s)	917
MflI	RGATCY	1 cut(s)	917
MhlI	GDGCHC	3 cut(s)	144, 636, 753
MluCI	AATT	3 cut(s)	55, 586, 871
MlyI	GAGTC	6 cut(s)	209, 218, 298, 608, 688, 716
MmeI	TCCRAC	2 cut(s)	579, 780
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	1 cut(s)	561
MspA1I	CMGCKG	2 cut(s)	478, 639
MspR9I	CCNGG	6 cut(s)	82, 211, 330, 331, 344, 716
MvaI	CCWGG	2 cut(s)	82, 211
MvnI	CGCG	3 cut(s)	326, 494, 537
MwoI	GCNNNNNNNGC	4 cut(s)	409, 443, 774, 896
NciI	CCSGG	4 cut(s)	330, 331, 344, 716
NdeII	GATC	1 cut(s)	917
NlaIV	GGNNCC	3 cut(s)	35, 297, 919
NmeAIII	GCCGAG	4 cut(s)	91, 206, 244, 702
NmuCI	GTSAC	2 cut(s)	100, 600
PciSI	GCTCTTC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	3 cut(s)	141, 200, 795
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	3 cut(s)	4, 122, 893
Pfl23II	CGTACG	1 cut(s)	426
PfoI	TCCNGGA	1 cut(s)	714
PleI	GAGTC	6 cut(s)	208, 218, 298, 607, 687, 716
PpsI	GAGTC	6 cut(s)	208, 218, 298, 607, 687, 716
Ppu21I	YACGTR	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	753
Psp1406I	AACGTT	1 cut(s)	558
Psp6I	CCWGG	2 cut(s)	80, 209
PspGI	CCWGG	2 cut(s)	80, 209
PspLI	CGTACG	1 cut(s)	426
PspN4I	GGNNCC	3 cut(s)	35, 297, 919
PspPI	GGNCC	2 cut(s)	78, 485
PsuI	RGATCY	1 cut(s)	917
PvuII	CAGCTG	1 cut(s)	478
RsaI	GTAC	6 cut(s)	20, 90, 408, 424, 428, 458
RsaNI	GTAC	6 cut(s)	19, 89, 407, 423, 427, 457
SacI	GAGCTC	1 cut(s)	753
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	561
Sau3AI	GATC	1 cut(s)	917
Sau96I	GGNCC	2 cut(s)	78, 485
ScaI	AGTACT	1 cut(s)	20
SchI	GAGTC	6 cut(s)	209, 218, 298, 608, 688, 716
ScrFI	CCNGG	6 cut(s)	82, 211, 330, 331, 344, 716
SduI	GDGCHC	3 cut(s)	144, 636, 753
SinI	GGWCC	1 cut(s)	485
SmaI	CCCGGG	1 cut(s)	331
SnaBI	TACGTA	1 cut(s)	426
Sse9I	AATT	3 cut(s)	55, 586, 871
SstI	GAGCTC	1 cut(s)	753
StyD4I	CCNGG	6 cut(s)	80, 209, 328, 329, 342, 714
TaaI	ACNGT	2 cut(s)	265, 292
TaiI	ACGT	3 cut(s)	257, 428, 561
TaqI	TCGA	5 cut(s)	194, 257, 708, 771, 798
TasI	AATT	3 cut(s)	55, 586, 871
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	8 cut(s)	79, 162, 233, 236, 281, 380, 449, 470
TfiI	GAWTC	3 cut(s)	4, 122, 893
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	2 cut(s)	109, 844
TseFI	GTSAC	2 cut(s)	100, 600
TseI	GCWGC	2 cut(s)	25, 478
Tsp45I	GTSAC	2 cut(s)	100, 600
TspDTI	ATGAA	2 cut(s)	17, 769
TspGWI	ACGGA	3 cut(s)	88, 106, 619
TspMI	CCCGGG	1 cut(s)	329
TspRI	CASTG	2 cut(s)	109, 844
VpaK11BI	GGWCC	1 cut(s)	485
XapI	RAATTY	1 cut(s)	871
XmaI	CCCGGG	1 cut(s)	329
XmnI	GAANNNNTTC	1 cut(s)	338
ZraI	GACGTC	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.