Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004073.1

Orthogroup ID

OG0006029

Physical Location & Seq

Genomic Coordinates Reverse (-)

3333 .. 4340

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004073.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

atgaatccagccgtcaagtactcgcagcaccggaacctcaccaagctcgtctctaattccgaagccgaggcggtgcggcccaggattgtacggatttccgtcactgacggcgacgccaccgattcctccagcgacgacgagcccgaggcgttcttcggccgccagagagtgaagaagtatgtgaatgagatttcgattgagtcgtgttccagggaggccgaggagtcggcggcggcggcggtctggaagagcaggacgtccaggacggtgaggaagaaggccgccggaaaaaccgtggttccggcgactcaccggactttgaagcccgcgcccgggaagaagttccggggagtgaggcagaggccgtgggggaaatgggcggcggaaatcagagacccgttcaggcgtgtacggctctggttgggtacgtacgatacggctgaggaagcggctatggtgtacgacaacgccgccatccagctgcgtggacctcacgcgctcaccaacttccactctcctccggcggtcaagtcagagggggaggagcgcgaggccgacattatgtccaacgttaagccggtcgtcagttacggctacaattccggcgaggagtcacacaacactatctgctccccaacctccgtgctccgctgtccctcgccgtcaaacgaagacgactcgtcgtcgccgagtcccaaacaacaacctcaacaacaactcgaagtccgggaagactcttgtgtttccgagaacttctcggagctctccgaccacaccagcttcgagagcttcattccaaacgacatcttcgatttccagacgacaatacctgacttcttggaagagagcagtgttttcaaagaaagcttctgcgatttcggaagtttcggcgacatcttcgccgattcggctgtggatttcgggttcggatcctccgccaccacaacctgcgactatttccaagacatcggcgacctctttgcctccgaccctcttgttgctttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

335

Amino Acids

37.14

Weight (kDa)

5.05

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11140 AT4G23750 AT4G23750
fragaria_vesca	FvH4_5g03920
malus_domestica	MD02G1220900.v1.1 MD06G1100500.v1.1 MD14G1120000.v1.1
prunus_persica	Prupe.5G114100_v2.0.a1
pyrus_communis	pycom06g09580
rosa_chinensis	RchiOBHm_Chr7g0195581
rosa_laevigata	RLG00000004107
rosa_multiflora	Rmu_co7992594.1_g000001 Rmu_sc0000487.1_g000064 Rmu_sc0004073.1_g000001 Rmu_ssc0000078.1_g000008 Rmu_ssc0000473.1_g000022
rosa_roxburghii	Rroxscaffold_3G00260330
rosa_rugosa	Rorug07G0024400
rosa_samantha	Rh4AG072300 Rh4AG073100 Rh4BG070300 Rh4CG078700 Rh7AG152100 Rh7BG153800 Rh7CG157300 Rh7DG153100
rosa_wichuraiana	Rw7G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	956
AccII	CGCG	3 cut(s)	329, 497, 549
AclI	AACGTT	1 cut(s)	570
AclWI	GGATC	2 cut(s)	924, 937
AcoI	YGGCCR	1 cut(s)	157
AcyI	GRCGYC	2 cut(s)	114, 257
AfaI	GTAC	6 cut(s)	20, 90, 411, 427, 431, 461
AfiI	CCNNNNNNNGG	2 cut(s)	332, 333
AgsI	TTSAA	2 cut(s)	322, 859
AhdI	GACNNNNNGTC	3 cut(s)	562, 679, 682
AjnI	CCWGG	3 cut(s)	80, 209, 260
AloI	GAACNNNNNNTCC	2 cut(s)	908, 940
AluBI	AGCT	6 cut(s)	46, 481, 763, 780, 789, 867
AluI	AGCT	6 cut(s)	46, 481, 763, 780, 789, 867
Alw21I	GWGCWC	2 cut(s)	648, 765
Alw26I	GTCTC	2 cut(s)	55, 387
AlwI	GGATC	2 cut(s)	924, 937
Ama87I	CYCGRG	2 cut(s)	143, 332
AoxI	GGCC	6 cut(s)	77, 157, 216, 279, 362, 552
ApeKI	GCWGC	2 cut(s)	25, 481
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	3 cut(s)	331, 499, 549
AspS9I	GGNCC	2 cut(s)	78, 488
AsuC2I	CCSGG	4 cut(s)	333, 334, 347, 728
AsuHPI	GGTGA	4 cut(s)	31, 280, 302, 493
AvaI	CYCGRG	2 cut(s)	143, 332
AvaII	GGWCC	1 cut(s)	488
BamHI	GGATCC	1 cut(s)	929
BanII	GRGCYC	2 cut(s)	144, 765
BbsI	GAAGAC	2 cut(s)	678, 738
Bbv12I	GWGCWC	2 cut(s)	648, 765
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	37, 468
BccI	CCATC	1 cut(s)	482
BceAI	ACGGC	6 cut(s)	124, 349, 428, 453, 607, 646
BcgI	CGANNNNNNTGC	2 cut(s)	962, 996
BciT130I	CCWGG	3 cut(s)	82, 211, 262
BcnI	CCSGG	4 cut(s)	333, 334, 347, 728
BcoDI	GTCTC	2 cut(s)	55, 387
BfuAI	ACCTGC	1 cut(s)	956
BglI	GCCNNNNNGGC	1 cut(s)	908
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	7 cut(s)	82, 211, 262, 333, 334, 347, 728
Bme18I	GGWCC	1 cut(s)	488
BmeRI	GACNNNNNGTC	3 cut(s)	562, 679, 682
BmeT110I	CYCGRG	2 cut(s)	143, 332
BmgT120I	GGNCC	2 cut(s)	78, 488
BmiI	GGNNCC	3 cut(s)	35, 300, 931
BmrFI	CCNGG	7 cut(s)	82, 211, 262, 333, 334, 347, 728
BpiI	GAAGAC	2 cut(s)	678, 738
BplI	GAGNNNNNCTC	2 cut(s)	740, 772
BpmI	CTGGAG	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	441
BpuMI	CCSGG	4 cut(s)	333, 334, 347, 728
BsaAI	YACGTR	1 cut(s)	429
BsaHI	GRCGYC	2 cut(s)	114, 257
BsaI	GGTCTC	1 cut(s)	387
BsaJI	CCNNGG	9 cut(s)	66, 80, 144, 210, 219, 294, 332, 346, 365
BsaWI	WCCGGW	2 cut(s)	30, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 333
Bse118I	RCCGGY	1 cut(s)	577
BseBI	CCWGG	3 cut(s)	82, 211, 262
BseDI	CCNNGG	9 cut(s)	66, 80, 144, 210, 219, 294, 332, 346, 365
BseGI	GGATG	1 cut(s)	474
BseLI	CCNNNNNNNGG	2 cut(s)	332, 333
BseMII	CTCAG	1 cut(s)	432
BseRI	GAGGAG	4 cut(s)	236, 507, 557, 623
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	2 cut(s)	37, 468
Bsh1236I	CGCG	3 cut(s)	329, 497, 549
Bsh1285I	CGRYCG	2 cut(s)	160, 582
BshFI	GGCC	6 cut(s)	79, 159, 218, 281, 364, 554
BsiEI	CGRYCG	2 cut(s)	160, 582
BsiHKAI	GWGCWC	2 cut(s)	648, 765
BsiHKCI	CYCGRG	2 cut(s)	143, 332
BsiWI	CGTACG	1 cut(s)	429
BslFI	GGGAC	2 cut(s)	639, 678
BslI	CCNNNNNNNGG	2 cut(s)	332, 333
BsmAI	GTCTC	2 cut(s)	55, 387
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	639, 678
BsnI	GGCC	6 cut(s)	79, 159, 218, 281, 364, 554
Bso31I	GGTCTC	1 cut(s)	387
BsoBI	CYCGRG	2 cut(s)	143, 332
Bsp1286I	GDGCHC	3 cut(s)	144, 648, 765
Bsp143I	GATC	1 cut(s)	929
BspANI	GGCC	6 cut(s)	79, 159, 218, 281, 364, 554
BspCNI	CTCAG	1 cut(s)	433
BspFNI	CGCG	3 cut(s)	329, 497, 549
BspLI	GGNNCC	3 cut(s)	35, 300, 931
BspMI	ACCTGC	1 cut(s)	956
BspPI	GGATC	2 cut(s)	924, 937
BspQI	GCTCTTC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	577
BssAI	RCCGGY	1 cut(s)	577
BssECI	CCNNGG	9 cut(s)	66, 80, 144, 210, 219, 294, 332, 346, 365
BssMI	GATC	1 cut(s)	929
BssNI	GRCGYC	2 cut(s)	114, 257
Bst2UI	CCWGG	3 cut(s)	82, 211, 262
Bst4CI	ACNGT	2 cut(s)	268, 295
Bst6I	CTCTTC	2 cut(s)	242, 837
BstACI	GRCGYC	2 cut(s)	114, 257
BstBAI	YACGTR	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	1 cut(s)	441
BstDSI	CCRYGG	2 cut(s)	294, 365
BstF5I	GGATG	1 cut(s)	474
BstFNI	CGCG	3 cut(s)	329, 497, 549
BstHHI	GCGC	3 cut(s)	331, 499, 549
BstKTI	GATC	1 cut(s)	932
BstMAI	GTCTC	2 cut(s)	55, 387
BstMBI	GATC	1 cut(s)	929
BstMCI	CGRYCG	2 cut(s)	160, 582
BstMWI	GCNNNNNNNGC	5 cut(s)	236, 412, 446, 786, 908
BstNI	CCWGG	3 cut(s)	82, 211, 262
BstSCI	CCNGG	7 cut(s)	80, 209, 260, 331, 332, 345, 726
BstSNI	TACGTA	1 cut(s)	429
BstUI	CGCG	3 cut(s)	329, 497, 549
BstV1I	GCAGC	2 cut(s)	37, 468
BstV2I	GAAGAC	2 cut(s)	678, 738
BstX2I	RGATCY	1 cut(s)	929
BstXI	CCANNNNNNTGG	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	929
BstZI	CGGCCG	1 cut(s)	157
BsuRI	GGCC	6 cut(s)	79, 159, 218, 281, 364, 554
BtgI	CCRYGG	2 cut(s)	294, 365
BtsCI	GGATG	1 cut(s)	474
BtsI	GCAGTG	1 cut(s)	856
BtsIMutI	CAGTG	2 cut(s)	102, 856
BveI	ACCTGC	1 cut(s)	956
Cac8I	GCNNGC	1 cut(s)	327
CfoI	GCGC	3 cut(s)	331, 499, 549
Cfr10I	RCCGGY	1 cut(s)	577
Cfr13I	GGNCC	2 cut(s)	78, 488
Cfr9I	CCCGGG	1 cut(s)	332
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	6 cut(s)	19, 89, 410, 426, 430, 460
CviQI	GTAC	6 cut(s)	19, 89, 410, 426, 430, 460
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	1 cut(s)	931
DpnII	GATC	1 cut(s)	929
DriI	GACNNNNNGTC	3 cut(s)	562, 679, 682
EaeI	YGGCCR	1 cut(s)	157
EagI	CGGCCG	1 cut(s)	157
Eam1104I	CTCTTC	2 cut(s)	242, 837
Eam1105I	GACNNNNNGTC	3 cut(s)	562, 679, 682
EarI	CTCTTC	2 cut(s)	242, 837
EciI	GGCGGA	2 cut(s)	398, 925
Ecl136II	GAGCTC	1 cut(s)	763
EclXI	CGGCCG	1 cut(s)	157
Eco105I	TACGTA	1 cut(s)	429
Eco24I	GRGCYC	2 cut(s)	144, 765
Eco31I	GGTCTC	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	488
Eco52I	CGGCCG	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	763
Eco88I	CYCGRG	2 cut(s)	143, 332
EcoICRI	GAGCTC	1 cut(s)	763
EcoRII	CCWGG	3 cut(s)	80, 209, 260
EcoT38I	GRGCYC	2 cut(s)	144, 765
Esp3I	CGTCTC	1 cut(s)	55
FaiI	YATR	4 cut(s)	180, 455, 563, 1006
FaqI	GGGAC	2 cut(s)	639, 678
FauI	CCCGC	1 cut(s)	334
FokI	GGATG	1 cut(s)	461
FriOI	GRGCYC	2 cut(s)	144, 765
GlaI	GCGC	3 cut(s)	330, 498, 548
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	6 cut(s)	79, 159, 218, 281, 364, 554
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	3 cut(s)	331, 499, 549
Hin1I	GRCGYC	2 cut(s)	114, 257
Hin6I	GCGC	3 cut(s)	329, 497, 547
HinP1I	GCGC	3 cut(s)	329, 497, 547
HindIII	AAGCTT	1 cut(s)	865
HphI	GGTGA	4 cut(s)	31, 280, 302, 493
Hpy166II	GTNNAC	3 cut(s)	410, 460, 488
Hpy188I	TCNGA	9 cut(s)	61, 392, 535, 748, 760, 769, 881, 929, 988
Hpy188III	TCNNGA	3 cut(s)	244, 784, 817
Hpy8I	GTNNAC	3 cut(s)	410, 460, 488
Hpy99I	CGWCG	5 cut(s)	116, 137, 140, 685, 688
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	2 cut(s)	268, 295
HpyCH4IV	ACGT	3 cut(s)	257, 428, 570
HpyF10VI	GCNNNNNNNGC	5 cut(s)	236, 412, 446, 786, 908
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	3 cut(s)	257, 428, 570
Hsp92I	GRCGYC	2 cut(s)	114, 257
HspAI	GCGC	3 cut(s)	329, 497, 547
Kzo9I	GATC	1 cut(s)	929
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	4 cut(s)	544, 635, 651, 760
Lsp1109I	GCAGC	2 cut(s)	37, 468
MaeII	ACGT	3 cut(s)	257, 428, 570
MaeIII	GTNAC	3 cut(s)	100, 587, 612
MalI	GATC	1 cut(s)	931
MboI	GATC	1 cut(s)	929
MflI	RGATCY	1 cut(s)	929
MhlI	GDGCHC	3 cut(s)	144, 648, 765
MluCI	AATT	2 cut(s)	55, 598
MlyI	GAGTC	7 cut(s)	209, 233, 301, 620, 671, 700, 728
MmeI	TCCRAC	2 cut(s)	591, 792
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	1 cut(s)	573
MspA1I	CMGCKG	2 cut(s)	481, 651
MspR9I	CCNGG	7 cut(s)	82, 211, 262, 333, 334, 347, 728
MvaI	CCWGG	3 cut(s)	82, 211, 262
MvnI	CGCG	3 cut(s)	329, 497, 549
MwoI	GCNNNNNNNGC	5 cut(s)	236, 412, 446, 786, 908
NciI	CCSGG	4 cut(s)	333, 334, 347, 728
NdeII	GATC	1 cut(s)	929
NlaIV	GGNNCC	3 cut(s)	35, 300, 931
NmeAIII	GCCGAG	3 cut(s)	91, 244, 714
NmuCI	GTSAC	2 cut(s)	100, 612
PciSI	GCTCTTC	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	4 cut(s)	141, 200, 686, 807
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	3 cut(s)	4, 122, 905
Pfl23II	CGTACG	1 cut(s)	429
PfoI	TCCNGGA	2 cut(s)	260, 726
PleI	GAGTC	7 cut(s)	208, 232, 301, 619, 671, 699, 728
PpsI	GAGTC	7 cut(s)	208, 232, 301, 619, 671, 699, 728
Ppu21I	YACGTR	1 cut(s)	429
Psp124BI	GAGCTC	1 cut(s)	765
Psp1406I	AACGTT	1 cut(s)	570
Psp6I	CCWGG	3 cut(s)	80, 209, 260
PspGI	CCWGG	3 cut(s)	80, 209, 260
PspLI	CGTACG	1 cut(s)	429
PspN4I	GGNNCC	3 cut(s)	35, 300, 931
PspPI	GGNCC	2 cut(s)	78, 488
PsuI	RGATCY	1 cut(s)	929
PvuII	CAGCTG	1 cut(s)	481
RsaI	GTAC	6 cut(s)	20, 90, 411, 427, 431, 461
RsaNI	GTAC	6 cut(s)	19, 89, 410, 426, 430, 460
SacI	GAGCTC	1 cut(s)	765
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	573
Sau3AI	GATC	1 cut(s)	929
Sau96I	GGNCC	2 cut(s)	78, 488
ScaI	AGTACT	1 cut(s)	20
SchI	GAGTC	7 cut(s)	209, 233, 301, 620, 671, 700, 728
ScrFI	CCNGG	7 cut(s)	82, 211, 262, 333, 334, 347, 728
SduI	GDGCHC	3 cut(s)	144, 648, 765
SinI	GGWCC	1 cut(s)	488
SmaI	CCCGGG	1 cut(s)	334
SnaBI	TACGTA	1 cut(s)	429
Sse9I	AATT	2 cut(s)	55, 598
SstI	GAGCTC	1 cut(s)	765
StyD4I	CCNGG	7 cut(s)	80, 209, 260, 331, 332, 345, 726
TaaI	ACNGT	2 cut(s)	268, 295
TaiI	ACGT	3 cut(s)	260, 431, 573
TaqI	TCGA	4 cut(s)	194, 720, 783, 810
TasI	AATT	2 cut(s)	55, 598
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	9 cut(s)	79, 162, 233, 236, 239, 284, 383, 452, 473
TfiI	GAWTC	3 cut(s)	4, 122, 905
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	2 cut(s)	109, 856
TseFI	GTSAC	2 cut(s)	100, 612
TseI	GCWGC	2 cut(s)	25, 481
Tsp45I	GTSAC	2 cut(s)	100, 612
TspDTI	ATGAA	2 cut(s)	17, 781
TspGWI	ACGGA	3 cut(s)	88, 106, 631
TspMI	CCCGGG	1 cut(s)	332
TspRI	CASTG	2 cut(s)	109, 856
VpaK11BI	GGWCC	1 cut(s)	488
XmaI	CCCGGG	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	341
ZraI	GACGTC	1 cut(s)	258
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.