Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006029

Physical Location & Seq

Genomic Coordinates Forward (+)

2347356 .. 2349261

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAATCCAGCCGTTAAGTTTTCGCAGCACCGGAACCACACCAAACTGGTCTCTAATTCCGAAGCCGAGGGTGTTCGGCCGAGGATTGTGAGGATTTCTGTCACTGACGGCGACGCTACCGATTCCTCCAGCGACGACGAGCCGGAGACGTTCTTTGGGCGGCAGAGAGTGAAGAAGTATGTGAATGAGATTTCGATTGAGTCGTGTTCAAGAGAGGCTGAGGAGGAGGCGGCGGTTTGTAAGAGCAGGACGTCCAGGACGGTGAGGAAGAAGACCGCCGGAAAAACCGTGGCTCCGGTGACTCACCGGACCTTGAAGCCCGCGCCCGGGAAGAAGTTCCGGGGAGTGAGGCAGCGGCCGTGGGGGAAATGGGCTGCCGAAATCAGAGACCCGTTCAGGCGAGTACGGCTGTGGTTAGGCACGTACGACACGGCTGAGGAAGCAGCTATGGTGTACGACAACGCGGCCATTCAGCTGCGTGGACCTCACGCGCTCACCAACTTCCACTCTCCTCCGGCGGTCACTGACGAGCCCGATGCCGACATTATGTCCGACGTCAAACCGGTCATCAGTTACGGCTACAATTCCGGCGAGGAGTCACACAACACCATCTGCTCCCCAACCTCCGTGCTCCGCTGTCCCTCGCCGTCAAACGAAGACGTCTCGTCGTCGCCGAGCCCGAAACACCTGCAACCCAAACAAGAACAACAACTCCAACAAGTCCAAGATGTCCAAGAAGACTCTTGTGTTTCCGAGAACTTCTCGGAGCTCTCGGACCACACCAGCTTCGAGAGCTTCATCTCGGACGACATATTCGATTTCCAGACTACAATACCAGATTTCTTCGAAGAGACGAGTGTTTTCAAAGAAAACAACAACAGCTTCTGCGATTTCGGAAATTTCGGCGACATCTTCACCGAATCAGCTATGGATTTCGGGTTCGGATCCTCCGGCAGCACAACCTGTGACTACTTCCAAGACATCGGCGACCTCTTTGCCTCCGACCCTCTTGTTGCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

341

Amino Acids

37.9

Weight (kDa)

4.93

Isoelectric Point (pI)

53.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	112 - 161	3.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11140 AT4G23750 AT4G23750
fragaria_vesca	FvH4_5g03920
malus_domestica	MD02G1220900.v1.1 MD06G1100500.v1.1 MD14G1120000.v1.1
prunus_persica	Prupe.5G114100_v2.0.a1
pyrus_communis	pycom06g09580
rosa_chinensis	RchiOBHm_Chr7g0195581
rosa_laevigata	RLG00000004107
rosa_multiflora	Rmu_co7992594.1_g000001 Rmu_sc0000487.1_g000064 Rmu_sc0004073.1_g000001 Rmu_ssc0000078.1_g000008 Rmu_ssc0000473.1_g000022
rosa_roxburghii	Rroxscaffold_3G00260330
rosa_rugosa	Rorug07G0024400
rosa_samantha	Rh4AG072300 Rh4AG073100 Rh4BG070300 Rh4CG078700 Rh7AG152100 Rh7BG153800 Rh7CG157300 Rh7DG153100
rosa_wichuraiana	Rw7G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	696
AatII	GACGTC	3 cut(s)	254, 558, 663
Acc36I	ACCTGC	1 cut(s)	696
AccII	CGCG	3 cut(s)	323, 464, 491
AciI	CCGC	9 cut(s)	160, 230, 233, 276, 321, 355, 464, 518, 634
AclWI	GGATC	2 cut(s)	939, 952
AcoI	YGGCCR	3 cut(s)	77, 356, 465
AcsI	RAATTY	1 cut(s)	898
AcyI	GRCGYC	3 cut(s)	251, 555, 660
AfaI	GTAC	3 cut(s)	405, 425, 455
AfiI	CCNNNNNNNGG	2 cut(s)	326, 327
AgeI	ACCGGT	1 cut(s)	562
AgsI	TTSAA	3 cut(s)	210, 316, 865
AhdI	GACNNNNNGTC	2 cut(s)	547, 664
AjnI	CCWGG	1 cut(s)	254
AloI	GAACNNNNNNTCC	4 cut(s)	696, 728, 923, 955
AluBI	AGCT	7 cut(s)	446, 475, 769, 786, 795, 882, 926
AluI	AGCT	7 cut(s)	446, 475, 769, 786, 795, 882, 926
Alw21I	GWGCWC	2 cut(s)	633, 771
Alw26I	GTCTC	5 cut(s)	55, 140, 381, 667, 845
AlwI	GGATC	2 cut(s)	939, 952
AlwNI	CAGNNNCTG	1 cut(s)	885
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	3 cut(s)	77, 356, 465
ApeKI	GCWGC	6 cut(s)	25, 352, 374, 443, 475, 954
ApoI	RAATTY	1 cut(s)	898
ArsI	GACNNNNNNTTYG	2 cut(s)	797, 829
AsiGI	ACCGGT	1 cut(s)	562
Asp700I	GAANNNNTTC	1 cut(s)	335
AspLEI	GCGC	2 cut(s)	325, 493
AspS9I	GGNCC	3 cut(s)	309, 482, 775
AsuC2I	CCSGG	3 cut(s)	327, 328, 341
AsuHPI	GGTGA	5 cut(s)	274, 296, 310, 487, 907
AsuII	TTCGAA	1 cut(s)	846
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	3 cut(s)	309, 482, 775
BamHI	GGATCC	1 cut(s)	944
BanII	GRGCYC	3 cut(s)	534, 680, 771
BbsI	GAAGAC	3 cut(s)	278, 663, 744
Bbv12I	GWGCWC	2 cut(s)	633, 771
BbvCI	CCTCAGC	2 cut(s)	219, 435
BbvI	GCAGC	6 cut(s)	37, 361, 364, 455, 462, 966
BccI	CCATC	1 cut(s)	617
BceAI	ACGGC	6 cut(s)	124, 343, 422, 447, 592, 631
BcgI	CGANNNNNNTGC	6 cut(s)	518, 552, 670, 704, 977, 1011
BciT130I	CCWGG	1 cut(s)	256
BcnI	CCSGG	3 cut(s)	327, 328, 341
BcoDI	GTCTC	5 cut(s)	55, 140, 381, 667, 845
BfuAI	ACCTGC	1 cut(s)	696
Bme1390I	CCNGG	4 cut(s)	256, 327, 328, 341
Bme18I	GGWCC	3 cut(s)	309, 482, 775
BmeRI	GACNNNNNGTC	2 cut(s)	547, 664
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	3 cut(s)	309, 482, 775
BmiI	GGNNCC	3 cut(s)	35, 294, 946
BmrFI	CCNGG	4 cut(s)	256, 327, 328, 341
BmsI	GCATC	1 cut(s)	526
BpiI	GAAGAC	3 cut(s)	278, 663, 744
BplI	GAGNNNNNCTC	2 cut(s)	746, 778
BpmI	CTGGAG	1 cut(s)	112
Bpu10I	CCTNAGC	2 cut(s)	219, 435
Bpu14I	TTCGAA	1 cut(s)	846
BpuMI	CCSGG	3 cut(s)	327, 328, 341
BsaAI	YACGTR	1 cut(s)	423
BsaHI	GRCGYC	3 cut(s)	251, 555, 660
BsaI	GGTCTC	2 cut(s)	55, 381
BsaJI	CCNNGG	6 cut(s)	66, 80, 288, 326, 340, 359
BsaWI	WCCGGW	4 cut(s)	30, 295, 306, 562
BsaXI	ACNNNNNCTCC	4 cut(s)	277, 307, 696, 726
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 327
Bse118I	RCCGGY	1 cut(s)	562
Bse1I	ACTGG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	6 cut(s)	66, 80, 288, 326, 340, 359
BseLI	CCNNNNNNNGG	2 cut(s)	326, 327
BseMII	CTCAG	2 cut(s)	210, 426
BseNI	ACTGG	1 cut(s)	51
BseRI	GAGGAG	4 cut(s)	236, 239, 501, 608
BseX3I	CGGCCG	2 cut(s)	77, 356
BseXI	GCAGC	6 cut(s)	37, 361, 364, 455, 462, 966
Bsh1236I	CGCG	3 cut(s)	323, 464, 491
Bsh1285I	CGRYCG	2 cut(s)	80, 359
BshFI	GGCC	3 cut(s)	79, 358, 467
BshTI	ACCGGT	1 cut(s)	562
BsiEI	CGRYCG	2 cut(s)	80, 359
BsiHKAI	GWGCWC	2 cut(s)	633, 771
BsiHKCI	CYCGRG	1 cut(s)	326
BsiWI	CGTACG	1 cut(s)	423
BslFI	GGGAC	1 cut(s)	624
BslI	CCNNNNNNNGG	2 cut(s)	326, 327
BsmAI	GTCTC	5 cut(s)	55, 140, 381, 667, 845
BsmBI	CGTCTC	3 cut(s)	140, 667, 845
BsmFI	GGGAC	1 cut(s)	624
BsnI	GGCC	3 cut(s)	79, 358, 467
Bso31I	GGTCTC	2 cut(s)	55, 381
BsoBI	CYCGRG	1 cut(s)	326
Bsp119I	TTCGAA	1 cut(s)	846
Bsp1286I	GDGCHC	4 cut(s)	534, 633, 680, 771
Bsp143I	GATC	1 cut(s)	944
BspACI	CCGC	9 cut(s)	160, 230, 233, 276, 321, 355, 464, 518, 634
BspANI	GGCC	3 cut(s)	79, 358, 467
BspCNI	CTCAG	2 cut(s)	211, 427
BspFNI	CGCG	3 cut(s)	323, 464, 491
BspLI	GGNNCC	3 cut(s)	35, 294, 946
BspMI	ACCTGC	1 cut(s)	696
BspPI	GGATC	2 cut(s)	939, 952
BspT104I	TTCGAA	1 cut(s)	846
BspTNI	GGTCTC	2 cut(s)	55, 381
BsrFI	RCCGGY	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	6 cut(s)	66, 80, 288, 326, 340, 359
BssMI	GATC	1 cut(s)	944
BssNI	GRCGYC	3 cut(s)	251, 555, 660
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	262, 289
Bst6I	CTCTTC	1 cut(s)	843
BstACI	GRCGYC	3 cut(s)	251, 555, 660
BstBAI	YACGTR	1 cut(s)	423
BstBI	TTCGAA	1 cut(s)	846
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	2 cut(s)	219, 435
BstDSI	CCRYGG	2 cut(s)	288, 359
BstFNI	CGCG	3 cut(s)	323, 464, 491
BstHHI	GCGC	2 cut(s)	325, 493
BstKTI	GATC	1 cut(s)	947
BstMAI	GTCTC	5 cut(s)	55, 140, 381, 667, 845
BstMBI	GATC	1 cut(s)	944
BstMCI	CGRYCG	2 cut(s)	80, 359
BstMWI	GCNNNNNNNGC	3 cut(s)	406, 440, 792
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	4 cut(s)	254, 325, 326, 339
BstUI	CGCG	3 cut(s)	323, 464, 491
BstV1I	GCAGC	6 cut(s)	37, 361, 364, 455, 462, 966
BstV2I	GAAGAC	3 cut(s)	278, 663, 744
BstX2I	RGATCY	1 cut(s)	944
BstYI	RGATCY	1 cut(s)	944
BstZI	CGGCCG	2 cut(s)	77, 356
BsuRI	GGCC	3 cut(s)	79, 358, 467
BtgI	CCRYGG	2 cut(s)	288, 359
BtsIMutI	CAGTG	2 cut(s)	102, 522
BveI	ACCTGC	1 cut(s)	696
Cac8I	GCNNGC	1 cut(s)	321
CaiI	CAGNNNCTG	1 cut(s)	885
CfoI	GCGC	2 cut(s)	325, 493
Cfr10I	RCCGGY	1 cut(s)	562
Cfr13I	GGNCC	3 cut(s)	309, 482, 775
Cfr9I	CCCGGG	1 cut(s)	326
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	3 cut(s)	404, 424, 454
CspAI	ACCGGT	1 cut(s)	562
CviQI	GTAC	3 cut(s)	404, 424, 454
DdeI	CTNAG	2 cut(s)	219, 435
DpnI	GATC	1 cut(s)	946
DpnII	GATC	1 cut(s)	944
DriI	GACNNNNNGTC	2 cut(s)	547, 664
EaeI	YGGCCR	3 cut(s)	77, 356, 465
EagI	CGGCCG	2 cut(s)	77, 356
Eam1104I	CTCTTC	1 cut(s)	843
Eam1105I	GACNNNNNGTC	2 cut(s)	547, 664
EarI	CTCTTC	1 cut(s)	843
Ecl136II	GAGCTC	1 cut(s)	769
EclXI	CGGCCG	2 cut(s)	77, 356
Eco24I	GRGCYC	3 cut(s)	534, 680, 771
Eco31I	GGTCTC	2 cut(s)	55, 381
Eco47I	GGWCC	3 cut(s)	309, 482, 775
Eco52I	CGGCCG	2 cut(s)	77, 356
Eco53kI	GAGCTC	1 cut(s)	769
Eco88I	CYCGRG	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	769
EcoRII	CCWGG	1 cut(s)	254
EcoT38I	GRGCYC	3 cut(s)	534, 680, 771
Esp3I	CGTCTC	3 cut(s)	140, 667, 845
FaiI	YATR	5 cut(s)	180, 449, 548, 812, 929
FaqI	GGGAC	1 cut(s)	624
FauI	CCCGC	1 cut(s)	328
FriOI	GRGCYC	3 cut(s)	534, 680, 771
GlaI	GCGC	2 cut(s)	324, 492
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	3 cut(s)	79, 358, 467
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	2 cut(s)	325, 493
Hin1I	GRCGYC	3 cut(s)	251, 555, 660
Hin6I	GCGC	2 cut(s)	323, 491
HinP1I	GCGC	2 cut(s)	323, 491
HinfI	GANTC	7 cut(s)	4, 122, 200, 301, 596, 740, 920
HphI	GGTGA	5 cut(s)	274, 296, 310, 487, 907
Hpy166II	GTNNAC	2 cut(s)	454, 482
Hpy188III	TCNNGA	3 cut(s)	210, 790, 823
Hpy8I	GTNNAC	2 cut(s)	454, 482
Hpy99I	CGWCG	6 cut(s)	116, 137, 140, 557, 670, 673
HpyCH4III	ACNGT	2 cut(s)	262, 289
HpyCH4IV	ACGT	5 cut(s)	149, 251, 422, 555, 660
HpyCH4V	TGCA	1 cut(s)	691
HpyF10VI	GCNNNNNNNGC	3 cut(s)	406, 440, 792
HpyF3I	CTNAG	2 cut(s)	219, 435
HpySE526I	ACGT	5 cut(s)	149, 251, 422, 555, 660
Hsp92I	GRCGYC	3 cut(s)	251, 555, 660
HspAI	GCGC	2 cut(s)	323, 491
Kzo9I	GATC	1 cut(s)	944
LmnI	GCTCC	4 cut(s)	298, 620, 636, 766
Lsp1109I	GCAGC	6 cut(s)	37, 361, 364, 455, 462, 966
LweI	GCATC	1 cut(s)	526
MaeII	ACGT	5 cut(s)	149, 251, 422, 555, 660
MaeIII	GTNAC	6 cut(s)	100, 298, 520, 572, 597, 965
MalI	GATC	1 cut(s)	946
MboI	GATC	1 cut(s)	944
MboII	GAAGA	9 cut(s)	184, 280, 283, 343, 668, 749, 835, 860, 904
MflI	RGATCY	1 cut(s)	944
MhlI	GDGCHC	4 cut(s)	534, 633, 680, 771
MluCI	AATT	3 cut(s)	55, 583, 898
MlyI	GAGTC	4 cut(s)	209, 295, 605, 734
MmeI	TCCRAC	2 cut(s)	576, 739
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	1 cut(s)	15
MspA1I	CMGCKG	3 cut(s)	355, 475, 636
MspR9I	CCNGG	4 cut(s)	256, 327, 328, 341
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	3 cut(s)	323, 464, 491
MwoI	GCNNNNNNNGC	3 cut(s)	406, 440, 792
NciI	CCSGG	3 cut(s)	327, 328, 341
NdeII	GATC	1 cut(s)	944
NlaIV	GGNNCC	3 cut(s)	35, 294, 946
NmeAIII	GCCGAG	3 cut(s)	91, 105, 699
NmuCI	GTSAC	5 cut(s)	100, 298, 520, 597, 965
NspV	TTCGAA	1 cut(s)	846
PaqCI	CACCTGC	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	4 cut(s)	200, 671, 677, 813
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	3 cut(s)	4, 122, 920
Pfl23II	CGTACG	1 cut(s)	423
PfoI	TCCNGGA	1 cut(s)	254
PinAI	ACCGGT	1 cut(s)	562
PleI	GAGTC	4 cut(s)	208, 295, 604, 734
PpsI	GAGTC	4 cut(s)	208, 295, 604, 734
Ppu21I	YACGTR	1 cut(s)	423
Psp124BI	GAGCTC	1 cut(s)	771
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspLI	CGTACG	1 cut(s)	423
PspN4I	GGNNCC	3 cut(s)	35, 294, 946
PspPI	GGNCC	3 cut(s)	309, 482, 775
PstNI	CAGNNNCTG	1 cut(s)	885
PsuI	RGATCY	1 cut(s)	944
PvuII	CAGCTG	1 cut(s)	475
RsaI	GTAC	3 cut(s)	405, 425, 455
RsaNI	GTAC	3 cut(s)	404, 424, 454
SacI	GAGCTC	1 cut(s)	771
SaqAI	TTAA	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	944
Sau96I	GGNCC	3 cut(s)	309, 482, 775
SchI	GAGTC	4 cut(s)	209, 295, 605, 734
ScrFI	CCNGG	4 cut(s)	256, 327, 328, 341
SduI	GDGCHC	4 cut(s)	534, 633, 680, 771
SfaNI	GCATC	1 cut(s)	526
SfuI	TTCGAA	1 cut(s)	846
SinI	GGWCC	3 cut(s)	309, 482, 775
SmaI	CCCGGG	1 cut(s)	328
Sse9I	AATT	3 cut(s)	55, 583, 898
SsiI	CCGC	9 cut(s)	160, 230, 233, 276, 321, 355, 464, 518, 634
SstI	GAGCTC	1 cut(s)	771
StyD4I	CCNGG	4 cut(s)	254, 325, 326, 339
TaaI	ACNGT	2 cut(s)	262, 289
TaiI	ACGT	5 cut(s)	152, 254, 425, 558, 663
TaqI	TCGA	4 cut(s)	194, 789, 816, 846
TasI	AATT	3 cut(s)	55, 583, 898
TauI	GCSGC	4 cut(s)	163, 233, 358, 467
TfiI	GAWTC	3 cut(s)	4, 122, 920
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	2 cut(s)	109, 529
TseFI	GTSAC	5 cut(s)	100, 298, 520, 597, 965
TseI	GCWGC	6 cut(s)	25, 352, 374, 443, 475, 954
Tsp45I	GTSAC	5 cut(s)	100, 298, 520, 597, 965
TspDTI	ATGAA	2 cut(s)	17, 787
TspGWI	ACGGA	1 cut(s)	616
TspMI	CCCGGG	1 cut(s)	326
TspRI	CASTG	2 cut(s)	109, 529
VpaK11BI	GGWCC	3 cut(s)	309, 482, 775
XapI	RAATTY	1 cut(s)	898
XmaI	CCCGGG	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	335
ZraI	GACGTC	3 cut(s)	252, 556, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.