Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006029

Physical Location & Seq

Genomic Coordinates Reverse (-)

11394207 .. 11395196

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG153800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAATCCAGCCGTCAAGTACTCGCAGCACCGGAACCACACCAAGCTCGTCTCTAATTCCGAAGCCGAGGCGGTGCGGCCCAGGATTGTACGGATTTCCGTCACTGACGGCGACGCCACCGATTCCTCCAGCGACGACGAGCCGGAGGCCTTCTTCGGCCGCCAGAGAGTGAAGAAGTATGTGAATGAGATTTCGATTGAGTCGTGTTCGAGGGAGGCCGAGGAGGCGGCGGCGGCCGCGGTCTGGAAGAGCAGGACGTCCAGGACGGTGAGGAAGAAGACCGCCGGAAAAACCGTGGTTCCGGCGACTCACCGGACGTTGAAGCCCGCGCCCGGGAAGAAGTTCCGGGGAGTGAGGCAGAGGCCGTGGGGAAAATGGGCGGCGGAAATCAGAGACCCGTTCAGGCGAGTACGGCTCTGGTTGGGTACGTACGATACGGCTGAGGAAGCGGCTATGGTGTACGACAACGCGGCCATCCAGCTGCGTGGACCTCACGCGCTCACCAACTTCCACTCTCCTCCGGCGGTCGAGGCCGACATTATGTCCAACGTTAAGCCGGTCGTCAGTTACGGCTACAATTCCGGCGAGGAGTCACACAACACTATCTGCTCCCCAACCTCAGTGCTCCGCTGTCCCTCGCCGTCAAACGAAGACGACTTGTCGTCGCCCACTCCCATACAACAACAACCTCAACAACAACTCGAAGTCCGGGAAGACTCTTGTGTTTCGGAGAACTTCTCGGAGCTGTCCGACCACACCAGCTTCGAGAGCTTCATTCCAAACGACATCTTCGATTTCCAGACGACAATACCTGACTTCTTCGAAAAGAGCAGTGTTTTCAAAGAAAGCTTCTGCGATTTCGAAAATTTCGGCGACATCTTCGCCGATTCGGCTGTGGATTTCGGGTTCGGATCCTCCGCCACCACAACCTGCGACTATTTCCAAGACATCGGCGACCTCTTTGCTTCCGACCCTCTTGTTGCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

329

Amino Acids

36.64

Weight (kDa)

5.14

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	114 - 163	3e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11140 AT4G23750 AT4G23750
fragaria_vesca	FvH4_5g03920
malus_domestica	MD02G1220900.v1.1 MD06G1100500.v1.1 MD14G1120000.v1.1
prunus_persica	Prupe.5G114100_v2.0.a1
pyrus_communis	pycom06g09580
rosa_chinensis	RchiOBHm_Chr7g0195581
rosa_laevigata	RLG00000004107
rosa_multiflora	Rmu_co7992594.1_g000001 Rmu_sc0000487.1_g000064 Rmu_sc0004073.1_g000001 Rmu_ssc0000078.1_g000008 Rmu_ssc0000473.1_g000022
rosa_roxburghii	Rroxscaffold_3G00260330
rosa_rugosa	Rorug07G0024400
rosa_samantha	Rh4AG072300 Rh4AG073100 Rh4BG070300 Rh4CG078700 Rh7AG152100 Rh7BG153800 Rh7CG157300 Rh7DG153100
rosa_wichuraiana	Rw7G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	938
AccII	CGCG	4 cut(s)	239, 329, 470, 497
AclI	AACGTT	1 cut(s)	549
AclWI	GGATC	2 cut(s)	906, 919
AcoI	YGGCCR	3 cut(s)	157, 234, 471
AcsI	RAATTY	1 cut(s)	865
AcyI	GRCGYC	2 cut(s)	114, 257
AfaI	GTAC	6 cut(s)	20, 90, 411, 427, 431, 461
AfiI	CCNNNNNNNGG	3 cut(s)	243, 332, 333
AgsI	TTSAA	2 cut(s)	322, 841
AhdI	GACNNNNNGTC	3 cut(s)	541, 658, 661
AjnI	CCWGG	2 cut(s)	80, 260
AloI	GAACNNNNNNTCC	2 cut(s)	890, 922
AluBI	AGCT	6 cut(s)	46, 481, 745, 762, 771, 849
AluI	AGCT	6 cut(s)	46, 481, 745, 762, 771, 849
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	2 cut(s)	55, 387
AlwI	GGATC	2 cut(s)	906, 919
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	8 cut(s)	77, 147, 157, 216, 234, 362, 471, 531
ApeKI	GCWGC	2 cut(s)	25, 481
ApoI	RAATTY	1 cut(s)	865
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	2 cut(s)	331, 499
AspS9I	GGNCC	2 cut(s)	78, 488
AsuC2I	CCSGG	4 cut(s)	333, 334, 347, 710
AsuHPI	GGTGA	3 cut(s)	280, 302, 493
AsuII	TTCGAA	2 cut(s)	822, 861
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	488
BamHI	GGATCC	1 cut(s)	911
BbsI	GAAGAC	3 cut(s)	284, 657, 720
Bbv12I	GWGCWC	1 cut(s)	627
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	37, 468
BccI	CCATC	1 cut(s)	482
BceAI	ACGGC	6 cut(s)	124, 349, 428, 453, 586, 625
BcgI	CGANNNNNNTGC	2 cut(s)	944, 978
BciT130I	CCWGG	2 cut(s)	82, 262
BcnI	CCSGG	4 cut(s)	333, 334, 347, 710
BcoDI	GTCTC	2 cut(s)	55, 387
BfuAI	ACCTGC	1 cut(s)	938
BglI	GCCNNNNNGGC	2 cut(s)	224, 890
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	6 cut(s)	82, 262, 333, 334, 347, 710
Bme18I	GGWCC	1 cut(s)	488
BmeRI	GACNNNNNGTC	3 cut(s)	541, 658, 661
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	78, 488
BmiI	GGNNCC	3 cut(s)	35, 300, 913
BmrFI	CCNGG	6 cut(s)	82, 262, 333, 334, 347, 710
BpiI	GAAGAC	3 cut(s)	284, 657, 720
BplI	GAGNNNNNCTC	4 cut(s)	399, 431, 722, 754
BpmI	CTGGAG	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu14I	TTCGAA	2 cut(s)	822, 861
BpuMI	CCSGG	4 cut(s)	333, 334, 347, 710
BsaAI	YACGTR	1 cut(s)	429
BsaHI	GRCGYC	2 cut(s)	114, 257
BsaI	GGTCTC	1 cut(s)	387
BsaJI	CCNNGG	8 cut(s)	66, 80, 219, 237, 294, 332, 346, 365
BsaWI	WCCGGW	2 cut(s)	30, 312
Bsc4I	CCNNNNNNNGG	3 cut(s)	243, 332, 333
Bse118I	RCCGGY	1 cut(s)	556
BseBI	CCWGG	2 cut(s)	82, 262
BseDI	CCNNGG	8 cut(s)	66, 80, 219, 237, 294, 332, 346, 365
BseGI	GGATG	1 cut(s)	474
BseLI	CCNNNNNNNGG	3 cut(s)	243, 332, 333
BseMII	CTCAG	2 cut(s)	432, 633
BseRI	GAGGAG	3 cut(s)	236, 507, 602
BseX3I	CGGCCG	2 cut(s)	157, 234
BseXI	GCAGC	2 cut(s)	37, 468
Bsh1236I	CGCG	4 cut(s)	239, 329, 470, 497
Bsh1285I	CGRYCG	4 cut(s)	160, 237, 528, 561
BshFI	GGCC	8 cut(s)	79, 149, 159, 218, 236, 364, 473, 533
BsiEI	CGRYCG	4 cut(s)	160, 237, 528, 561
BsiHKAI	GWGCWC	1 cut(s)	627
BsiHKCI	CYCGRG	1 cut(s)	332
BsiWI	CGTACG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	618
BslI	CCNNNNNNNGG	3 cut(s)	243, 332, 333
BsmAI	GTCTC	2 cut(s)	55, 387
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	618
BsnI	GGCC	8 cut(s)	79, 149, 159, 218, 236, 364, 473, 533
Bso31I	GGTCTC	1 cut(s)	387
BsoBI	CYCGRG	1 cut(s)	332
Bsp119I	TTCGAA	2 cut(s)	822, 861
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp143I	GATC	1 cut(s)	911
BspANI	GGCC	8 cut(s)	79, 149, 159, 218, 236, 364, 473, 533
BspCNI	CTCAG	2 cut(s)	433, 632
BspFNI	CGCG	4 cut(s)	239, 329, 470, 497
BspLI	GGNNCC	3 cut(s)	35, 300, 913
BspMI	ACCTGC	1 cut(s)	938
BspPI	GGATC	2 cut(s)	906, 919
BspQI	GCTCTTC	1 cut(s)	242
BspT104I	TTCGAA	2 cut(s)	822, 861
BspTNI	GGTCTC	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	556
BssAI	RCCGGY	1 cut(s)	556
BssECI	CCNNGG	8 cut(s)	66, 80, 219, 237, 294, 332, 346, 365
BssMI	GATC	1 cut(s)	911
BssNI	GRCGYC	2 cut(s)	114, 257
Bst2UI	CCWGG	2 cut(s)	82, 262
Bst4CI	ACNGT	2 cut(s)	268, 295
Bst6I	CTCTTC	1 cut(s)	242
BstACI	GRCGYC	2 cut(s)	114, 257
BstBAI	YACGTR	1 cut(s)	429
BstBI	TTCGAA	2 cut(s)	822, 861
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	2 cut(s)	441, 619
BstDSI	CCRYGG	3 cut(s)	237, 294, 365
BstF5I	GGATG	1 cut(s)	474
BstFNI	CGCG	4 cut(s)	239, 329, 470, 497
BstHHI	GCGC	2 cut(s)	331, 499
BstKTI	GATC	1 cut(s)	914
BstMAI	GTCTC	2 cut(s)	55, 387
BstMBI	GATC	1 cut(s)	911
BstMCI	CGRYCG	4 cut(s)	160, 237, 528, 561
BstMWI	GCNNNNNNNGC	8 cut(s)	224, 233, 236, 412, 446, 530, 768, 890
BstNI	CCWGG	2 cut(s)	82, 262
BstSCI	CCNGG	6 cut(s)	80, 260, 331, 332, 345, 708
BstSNI	TACGTA	1 cut(s)	429
BstUI	CGCG	4 cut(s)	239, 329, 470, 497
BstV1I	GCAGC	2 cut(s)	37, 468
BstV2I	GAAGAC	3 cut(s)	284, 657, 720
BstX2I	RGATCY	1 cut(s)	911
BstXI	CCANNNNNNTGG	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	911
BstZI	CGGCCG	2 cut(s)	157, 234
BsuRI	GGCC	8 cut(s)	79, 149, 159, 218, 236, 364, 473, 533
BtgI	CCRYGG	3 cut(s)	237, 294, 365
BtsCI	GGATG	1 cut(s)	474
BtsI	GCAGTG	1 cut(s)	838
BtsIMutI	CAGTG	3 cut(s)	102, 627, 838
BveI	ACCTGC	1 cut(s)	938
Cac8I	GCNNGC	1 cut(s)	327
CciNI	GCGGCCGC	1 cut(s)	234
CfoI	GCGC	2 cut(s)	331, 499
Cfr10I	RCCGGY	1 cut(s)	556
Cfr13I	GGNCC	2 cut(s)	78, 488
Cfr42I	CCGCGG	1 cut(s)	240
Cfr9I	CCCGGG	1 cut(s)	332
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	6 cut(s)	19, 89, 410, 426, 430, 460
CviQI	GTAC	6 cut(s)	19, 89, 410, 426, 430, 460
DdeI	CTNAG	2 cut(s)	441, 619
DpnI	GATC	1 cut(s)	913
DpnII	GATC	1 cut(s)	911
DriI	GACNNNNNGTC	3 cut(s)	541, 658, 661
EaeI	YGGCCR	3 cut(s)	157, 234, 471
EagI	CGGCCG	2 cut(s)	157, 234
Eam1104I	CTCTTC	1 cut(s)	242
Eam1105I	GACNNNNNGTC	3 cut(s)	541, 658, 661
EarI	CTCTTC	1 cut(s)	242
EciI	GGCGGA	2 cut(s)	398, 907
EclXI	CGGCCG	2 cut(s)	157, 234
Eco105I	TACGTA	1 cut(s)	429
Eco147I	AGGCCT	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	488
Eco52I	CGGCCG	2 cut(s)	157, 234
Eco88I	CYCGRG	1 cut(s)	332
EcoRII	CCWGG	2 cut(s)	80, 260
Esp3I	CGTCTC	1 cut(s)	55
FaiI	YATR	5 cut(s)	180, 455, 542, 677, 988
FaqI	GGGAC	1 cut(s)	618
FauI	CCCGC	1 cut(s)	334
FokI	GGATG	1 cut(s)	461
GlaI	GCGC	2 cut(s)	330, 498
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	8 cut(s)	79, 149, 159, 218, 236, 364, 473, 533
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	2 cut(s)	331, 499
Hin1I	GRCGYC	2 cut(s)	114, 257
Hin6I	GCGC	2 cut(s)	329, 497
HinP1I	GCGC	2 cut(s)	329, 497
HindIII	AAGCTT	1 cut(s)	847
HinfI	GANTC	7 cut(s)	4, 122, 200, 307, 590, 716, 887
HphI	GGTGA	3 cut(s)	280, 302, 493
Hpy166II	GTNNAC	2 cut(s)	460, 488
Hpy188I	TCNGA	7 cut(s)	61, 392, 730, 742, 751, 911, 970
Hpy188III	TCNNGA	3 cut(s)	244, 766, 799
Hpy8I	GTNNAC	2 cut(s)	460, 488
Hpy99I	CGWCG	4 cut(s)	116, 137, 140, 667
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	2 cut(s)	268, 295
HpyCH4IV	ACGT	4 cut(s)	257, 317, 428, 549
HpyF10VI	GCNNNNNNNGC	8 cut(s)	224, 233, 236, 412, 446, 530, 768, 890
HpyF3I	CTNAG	2 cut(s)	441, 619
HpySE526I	ACGT	4 cut(s)	257, 317, 428, 549
Hsp92I	GRCGYC	2 cut(s)	114, 257
HspAI	GCGC	2 cut(s)	329, 497
KspI	CCGCGG	1 cut(s)	240
Kzo9I	GATC	1 cut(s)	911
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	3 cut(s)	614, 630, 742
Lsp1109I	GCAGC	2 cut(s)	37, 468
MaeII	ACGT	4 cut(s)	257, 317, 428, 549
MaeIII	GTNAC	3 cut(s)	100, 566, 591
MalI	GATC	1 cut(s)	913
MboI	GATC	1 cut(s)	911
MflI	RGATCY	1 cut(s)	911
MhlI	GDGCHC	1 cut(s)	627
MluCI	AATT	3 cut(s)	55, 577, 865
MlyI	GAGTC	4 cut(s)	209, 301, 599, 710
MmeI	TCCRAC	2 cut(s)	570, 774
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	1 cut(s)	552
MspA1I	CMGCKG	3 cut(s)	239, 481, 630
MspR9I	CCNGG	6 cut(s)	82, 262, 333, 334, 347, 710
MvaI	CCWGG	2 cut(s)	82, 262
MvnI	CGCG	4 cut(s)	239, 329, 470, 497
MwoI	GCNNNNNNNGC	8 cut(s)	224, 233, 236, 412, 446, 530, 768, 890
NciI	CCSGG	4 cut(s)	333, 334, 347, 710
NdeII	GATC	1 cut(s)	911
NlaIV	GGNNCC	3 cut(s)	35, 300, 913
NmeAIII	GCCGAG	2 cut(s)	91, 244
NmuCI	GTSAC	2 cut(s)	100, 591
NotI	GCGGCCGC	1 cut(s)	234
NspV	TTCGAA	2 cut(s)	822, 861
PceI	AGGCCT	1 cut(s)	149
PciSI	GCTCTTC	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	2 cut(s)	200, 789
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	3 cut(s)	4, 122, 887
Pfl23II	CGTACG	1 cut(s)	429
PfoI	TCCNGGA	2 cut(s)	260, 708
PleI	GAGTC	4 cut(s)	208, 301, 598, 710
PpsI	GAGTC	4 cut(s)	208, 301, 598, 710
Ppu21I	YACGTR	1 cut(s)	429
Psp1406I	AACGTT	1 cut(s)	549
Psp6I	CCWGG	2 cut(s)	80, 260
PspGI	CCWGG	2 cut(s)	80, 260
PspLI	CGTACG	1 cut(s)	429
PspN4I	GGNNCC	3 cut(s)	35, 300, 913
PspPI	GGNCC	2 cut(s)	78, 488
PsuI	RGATCY	1 cut(s)	911
PvuII	CAGCTG	1 cut(s)	481
RsaI	GTAC	6 cut(s)	20, 90, 411, 427, 431, 461
RsaNI	GTAC	6 cut(s)	19, 89, 410, 426, 430, 460
SacII	CCGCGG	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	552
Sau3AI	GATC	1 cut(s)	911
Sau96I	GGNCC	2 cut(s)	78, 488
ScaI	AGTACT	1 cut(s)	20
SchI	GAGTC	4 cut(s)	209, 301, 599, 710
ScrFI	CCNGG	6 cut(s)	82, 262, 333, 334, 347, 710
SduI	GDGCHC	1 cut(s)	627
Sfr303I	CCGCGG	1 cut(s)	240
SfuI	TTCGAA	2 cut(s)	822, 861
SgrBI	CCGCGG	1 cut(s)	240
SinI	GGWCC	1 cut(s)	488
SmaI	CCCGGG	1 cut(s)	334
SnaBI	TACGTA	1 cut(s)	429
Sse9I	AATT	3 cut(s)	55, 577, 865
SseBI	AGGCCT	1 cut(s)	149
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	6 cut(s)	80, 260, 331, 332, 345, 708
TaaI	ACNGT	2 cut(s)	268, 295
TaiI	ACGT	4 cut(s)	260, 320, 431, 552
TaqI	TCGA	8 cut(s)	194, 209, 528, 702, 765, 792, 822, 861
TasI	AATT	3 cut(s)	55, 577, 865
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	9 cut(s)	79, 162, 230, 233, 236, 239, 383, 452, 473
TfiI	GAWTC	3 cut(s)	4, 122, 887
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	3 cut(s)	109, 627, 838
TseFI	GTSAC	2 cut(s)	100, 591
TseI	GCWGC	2 cut(s)	25, 481
Tsp45I	GTSAC	2 cut(s)	100, 591
TspDTI	ATGAA	2 cut(s)	17, 763
TspGWI	ACGGA	2 cut(s)	88, 106
TspMI	CCCGGG	1 cut(s)	332
TspRI	CASTG	3 cut(s)	109, 627, 838
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	1 cut(s)	865
XmaI	CCCGGG	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	341
ZraI	GACGTC	1 cut(s)	258
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.