Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006029

Physical Location & Seq

Genomic Coordinates Reverse (-)

25664008 .. 25665155

Gene Structure 1148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1220900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAATTGTCCTGCTGTTAAGTACGCGCAGAACCGGCACCACACTACGATGGTGGCCAATTCGGCGGAAGCGGACGAGTTCGAGTCCGTGAGGCCGCGTGTTGTGCGGATATCGATCACTGACGGTAACGCCACTGACTCCTCCATCGACGACGAGGCCAAGGAGTCGTCTTTTTGTGGGACCCGCCACCGAGTCAAGAGGATTGTTAATGAGATTACCATCGAGTCCTGCTCAAACAGGGACACCGACTCTGCTGTTTGGAGGAGTCGGATGTTAAGGACCAGGAGGAAGCGGTCGTCCGGGAAATCCGAAGGTGGGAATATAAACCGTATGAACACAAGCTGCCGGAATAAGGCAGATGAAGAAAGATTGCAACATTTGAAAGATAAAGCAGTTGAACTGAAGGTTGACGGGGACGTAGAATTTCATAAAAATGTATTATACAAGTCTGTGCCAAGGATTTCATGTTCTGCATCCTTTAATGGACTTGGTGCAACTTCTGGGAGGGGCCATCACAGGAATCCATTCAATGACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

180

Amino Acids

20.18

Weight (kDa)

9.5

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11140 AT4G23750 AT4G23750
fragaria_vesca	FvH4_5g03920
malus_domestica	MD02G1220900.v1.1 MD06G1100500.v1.1 MD14G1120000.v1.1
prunus_persica	Prupe.5G114100_v2.0.a1
pyrus_communis	pycom06g09580
rosa_chinensis	RchiOBHm_Chr7g0195581
rosa_laevigata	RLG00000004107
rosa_multiflora	Rmu_co7992594.1_g000001 Rmu_sc0000487.1_g000064 Rmu_sc0004073.1_g000001 Rmu_ssc0000078.1_g000008 Rmu_ssc0000473.1_g000022
rosa_roxburghii	Rroxscaffold_3G00260330
rosa_rugosa	Rorug07G0024400
rosa_samantha	Rh4AG072300 Rh4AG073100 Rh4BG070300 Rh4CG078700 Rh7AG152100 Rh7BG153800 Rh7CG157300 Rh7DG153100
rosa_wichuraiana	Rw7G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	36
AccII	CGCG	2 cut(s)	26, 97
AciI	CCGC	6 cut(s)	65, 71, 95, 106, 184, 292
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	2 cut(s)	315, 352
AgsI	TTSAA	3 cut(s)	382, 398, 529
AjnI	CCWGG	1 cut(s)	281
AloI	GAACNNNNNNTCC	2 cut(s)	451, 483
AluBI	AGCT	1 cut(s)	342
AluI	AGCT	1 cut(s)	342
AoxI	GGCC	4 cut(s)	54, 92, 156, 508
ApeKI	GCWGC	1 cut(s)	342
ApoI	RAATTY	1 cut(s)	422
Asp700I	GAANNNNTTC	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	3 cut(s)	180, 279, 508
AsuC2I	CCSGG	1 cut(s)	301
AvaII	GGWCC	2 cut(s)	180, 279
BalI	TGGCCA	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	4 cut(s)	43, 152, 227, 519
BciT130I	CCWGG	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	301
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	2 cut(s)	95, 343
BlsI	GCNGC	2 cut(s)	96, 344
Bme1390I	CCNGG	2 cut(s)	283, 301
Bme18I	GGWCC	2 cut(s)	180, 279
BmgT120I	GGNCC	3 cut(s)	180, 279, 508
BmiI	GGNNCC	4 cut(s)	38, 181, 182, 509
BmrFI	CCNGG	2 cut(s)	283, 301
BmsI	GCATC	1 cut(s)	482
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpuMI	CCSGG	1 cut(s)	301
Bsa29I	ATCGAT	1 cut(s)	113
BsaBI	GATNNNNATC	2 cut(s)	113, 218
BsaJI	CCNNGG	2 cut(s)	159, 455
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 352
Bse118I	RCCGGY	1 cut(s)	33
Bse8I	GATNNNNATC	2 cut(s)	113, 218
BseBI	CCWGG	1 cut(s)	283
BseCI	ATCGAT	1 cut(s)	113
BseDI	CCNNGG	2 cut(s)	159, 455
BseGI	GGATG	2 cut(s)	276, 473
BseJI	GATNNNNATC	2 cut(s)	113, 218
BseLI	CCNNNNNNNGG	2 cut(s)	315, 352
BseRI	GAGGAG	2 cut(s)	130, 277
BseXI	GCAGC	1 cut(s)	329
Bsh1236I	CGCG	2 cut(s)	26, 97
Bsh1285I	CGRYCG	1 cut(s)	296
BshFI	GGCC	4 cut(s)	56, 94, 158, 510
BshNI	GGYRCC	1 cut(s)	36
BshVI	ATCGAT	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	296
BsiSI	CCGG	3 cut(s)	34, 300, 346
BslFI	GGGAC	3 cut(s)	193, 254, 428
BslI	CCNNNNNNNGG	2 cut(s)	315, 352
BsmFI	GGGAC	3 cut(s)	193, 254, 428
BsnI	GGCC	4 cut(s)	56, 94, 158, 510
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	6 cut(s)	65, 71, 95, 106, 184, 292
BspANI	GGCC	4 cut(s)	56, 94, 158, 510
BspDI	ATCGAT	1 cut(s)	113
BspFNI	CGCG	2 cut(s)	26, 97
BspLI	GGNNCC	4 cut(s)	38, 181, 182, 509
BspT107I	GGYRCC	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	33
BssAI	RCCGGY	1 cut(s)	33
BssECI	CCNNGG	2 cut(s)	159, 455
BssMI	GATC	1 cut(s)	114
BssT1I	CCWWGG	2 cut(s)	159, 455
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	125, 329
BstF5I	GGATG	2 cut(s)	276, 473
BstFNI	CGCG	2 cut(s)	26, 97
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	114
BstMCI	CGRYCG	1 cut(s)	296
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 62, 103
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	281, 299
BstUI	CGCG	2 cut(s)	26, 97
BstV1I	GCAGC	1 cut(s)	329
Bsu15I	ATCGAT	1 cut(s)	113
BsuRI	GGCC	4 cut(s)	56, 94, 158, 510
BsuTUI	ATCGAT	1 cut(s)	113
BtsCI	GGATG	2 cut(s)	276, 473
BtsIMutI	CAGTG	2 cut(s)	117, 132
CfoI	GCGC	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	33
Cfr13I	GGNCC	3 cut(s)	180, 279, 508
ClaI	ATCGAT	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	1 cut(s)	465
CviJI	RGCY	5 cut(s)	56, 94, 158, 342, 510
CviKI_1	RGCY	5 cut(s)	56, 94, 158, 342, 510
CviQI	GTAC	1 cut(s)	22
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	159, 455
Eco32I	GATATC	1 cut(s)	111
Eco47I	GGWCC	2 cut(s)	180, 279
Eco57I	CTGAAG	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	281
EcoRV	GATATC	1 cut(s)	111
EcoT14I	CCWWGG	2 cut(s)	159, 455
ErhI	CCWWGG	2 cut(s)	159, 455
FaeI	CATG	1 cut(s)	468
FaiI	YATR	5 cut(s)	323, 332, 429, 442, 466
FaqI	GGGAC	3 cut(s)	193, 254, 428
FatI	CATG	1 cut(s)	464
FauI	CCCGC	1 cut(s)	191
Fnu4HI	GCNGC	2 cut(s)	95, 343
FokI	GGATG	2 cut(s)	283, 460
Fsp4HI	GCNGC	2 cut(s)	95, 343
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	95, 343
HaeIII	GGCC	4 cut(s)	56, 94, 158, 510
HapII	CCGG	3 cut(s)	34, 300, 346
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	1 cut(s)	468
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	8 cut(s)	83, 137, 164, 192, 224, 248, 265, 520
HpaII	CCGG	3 cut(s)	34, 300, 346
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	2 cut(s)	270, 310
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	2 cut(s)	152, 155
HpyAV	CCTTC	2 cut(s)	305, 397
HpyCH4III	ACNGT	2 cut(s)	125, 329
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	3 cut(s)	373, 473, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 62, 103
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	1 cut(s)	468
HspAI	GCGC	1 cut(s)	26
KflI	GGGWCCC	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	114
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	1 cut(s)	482
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	1 cut(s)	374
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	3 cut(s)	4, 58, 422
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	7 cut(s)	92, 131, 173, 201, 233, 242, 274
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	7 cut(s)	84, 148, 151, 192, 255, 279, 498
Mox20I	TGGCCA	1 cut(s)	56
MroXI	GAANNNNTTC	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	4 cut(s)	18, 207, 275, 480
MslI	CAYNNNNRTG	2 cut(s)	47, 432
Msp20I	TGGCCA	1 cut(s)	56
MspI	CCGG	3 cut(s)	34, 300, 346
MspR9I	CCNGG	2 cut(s)	283, 301
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	2 cut(s)	26, 97
MwoI	GCNNNNNNNGC	3 cut(s)	34, 62, 103
NciI	CCSGG	1 cut(s)	301
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	1 cut(s)	468
NlaIV	GGNNCC	4 cut(s)	38, 181, 182, 509
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	1 cut(s)	520
PfoI	TCCNGGA	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	96, 344
PleI	GAGTC	7 cut(s)	91, 131, 172, 200, 232, 242, 273
PpsI	GAGTC	7 cut(s)	91, 131, 172, 200, 232, 242, 273
PpuMI	RGGWCCY	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	4 cut(s)	38, 181, 182, 509
PspPI	GGNCC	3 cut(s)	180, 279, 508
PspPPI	RGGWCCY	1 cut(s)	180
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	2 cut(s)	47, 432
SaqAI	TTAA	4 cut(s)	18, 207, 275, 480
SatI	GCNGC	2 cut(s)	95, 343
Sau3AI	GATC	1 cut(s)	114
Sau96I	GGNCC	3 cut(s)	180, 279, 508
SchI	GAGTC	7 cut(s)	92, 131, 173, 201, 233, 242, 274
ScrFI	CCNGG	2 cut(s)	283, 301
SetI	ASST	4 cut(s)	316, 344, 408, 420
SfaNI	GCATC	1 cut(s)	482
SinI	GGWCC	2 cut(s)	180, 279
SmiMI	CAYNNNNRTG	2 cut(s)	47, 432
Sse9I	AATT	3 cut(s)	4, 58, 422
SsiI	CCGC	6 cut(s)	65, 71, 95, 106, 184, 292
StyD4I	CCNGG	2 cut(s)	281, 299
StyI	CCWWGG	2 cut(s)	159, 455
TaaI	ACNGT	2 cut(s)	125, 329
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	4 cut(s)	81, 113, 147, 222
TasI	AATT	3 cut(s)	4, 58, 422
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	520
Tru1I	TTAA	4 cut(s)	18, 207, 275, 480
Tru9I	TTAA	4 cut(s)	18, 207, 275, 480
TscAI	CASTG	2 cut(s)	124, 139
TseI	GCWGC	1 cut(s)	342
TspDTI	ATGAA	5 cut(s)	17, 347, 375, 416, 453
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	2 cut(s)	124, 139
VpaK11BI	GGWCC	2 cut(s)	180, 279
XapI	RAATTY	1 cut(s)	422
XmnI	GAANNNNTTC	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.