Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006029

Physical Location & Seq

Genomic Coordinates Forward (+)

54776986 .. 54777990

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00260330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAATCCAGCCGTCAAGTACTCGCAGCACCGGAACCACACCAAGCTCGTCTCTAATTCCGAAGCCGAGGCGGTGCGGCCCAGGATTGTACGGATTTCCGTCACTGACGGCGACGCCACCGATTCCTCTAGTGACGACGAGCCGGAGGCGTTCTTCGGGCGCCAGAGAGTGAAGAAGTATGTGAATGAGATTTCGATTGAGTCGTGTTCGAGGGAGGCCGAGGAGGCGGCGGCGGCCGTCTGGAAGAGCAGGACGTCGAGGACCGTGAGGAAGAAGACCGCCGGAAAAACCGTGGTTCCGGCGACCCACCGGACGTTGAAGCCCGCGCCCGGGAAGAAGTTCCGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAAATCAGAGACCCGTTCAGGCGAGTACGGCTCTGGTTGGGTACGTACGATACGGCTGAGGAAGCGGCTATGGTGTACGACAACGCGGCCATCCAGCTGCGTGGGCCTCACGCGCTCACCAACTTCCACTCTCCTCCGGCGGTCAAGTCCGAAGGGGAGGAGCGCGAGGCCAACATTATGTCGGACGTTAAGCCGGTCGTCAGTTACGGCTACAATTCCGGCGAGGAGTCACACAACACTATCTGCTCCCCAACCTCCGTGCTCCGCTGTCCCTCGCCGTCTAACGAAGACGACTCGTCGTCGCCGAGTCCCAAACGACAACCTCCACAACAACTCGAAGTCCGGGAAGACTCTTGTGTTTCCGAGAACTTCTCGGAGCTGTCCGACCACACCAGCTTCGAGAGTTTCATTCCAAACGACATCTTCGATTTCCAGACGACAATACCTGACTTCTTCGAAGAAAGCAGTGTTTTCAAAGAAAGCTTCTGCGATTTCGAAAATTTCGGCGACATCTTCGCCGATTCGGCTGTGGATTTCGGGTTCGGATCCTCCGCCACCACAACCTGCGACTATTTCCAAGACATCGGCGACCTCTTTGCCTCCGACCCTCTTGTTGCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

334

Amino Acids

37.23

Weight (kDa)

5.12

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	113 - 162	3e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11140 AT4G23750 AT4G23750
fragaria_vesca	FvH4_5g03920
malus_domestica	MD02G1220900.v1.1 MD06G1100500.v1.1 MD14G1120000.v1.1
prunus_persica	Prupe.5G114100_v2.0.a1
pyrus_communis	pycom06g09580
rosa_chinensis	RchiOBHm_Chr7g0195581
rosa_laevigata	RLG00000004107
rosa_multiflora	Rmu_co7992594.1_g000001 Rmu_sc0000487.1_g000064 Rmu_sc0004073.1_g000001 Rmu_ssc0000078.1_g000008 Rmu_ssc0000473.1_g000022
rosa_roxburghii	Rroxscaffold_3G00260330
rosa_rugosa	Rorug07G0024400
rosa_samantha	Rh4AG072300 Rh4AG073100 Rh4BG070300 Rh4CG078700 Rh7AG152100 Rh7BG153800 Rh7CG157300 Rh7DG153100
rosa_wichuraiana	Rw7G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	953
AccB1I	GGYRCC	1 cut(s)	159
AccII	CGCG	4 cut(s)	326, 467, 494, 546
AclWI	GGATC	2 cut(s)	921, 934
AcoI	YGGCCR	2 cut(s)	234, 468
AcsI	RAATTY	1 cut(s)	880
AcyI	GRCGYC	3 cut(s)	114, 160, 254
AfaI	GTAC	6 cut(s)	20, 90, 408, 424, 428, 458
AfiI	CCNNNNNNNGG	2 cut(s)	329, 330
AgsI	TTSAA	2 cut(s)	319, 856
AhdI	GACNNNNNGTC	2 cut(s)	676, 679
AjnI	CCWGG	1 cut(s)	80
AloI	GAACNNNNNNTCC	2 cut(s)	905, 937
AluBI	AGCT	5 cut(s)	46, 478, 760, 777, 864
AluI	AGCT	5 cut(s)	46, 478, 760, 777, 864
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	2 cut(s)	55, 384
AlwI	GGATC	2 cut(s)	921, 934
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	7 cut(s)	77, 216, 234, 359, 468, 485, 549
ApeKI	GCWGC	2 cut(s)	25, 478
ApoI	RAATTY	1 cut(s)	880
Asp700I	GAANNNNTTC	1 cut(s)	338
AspLEI	GCGC	4 cut(s)	162, 328, 496, 546
AspS9I	GGNCC	3 cut(s)	78, 261, 485
AsuC2I	CCSGG	4 cut(s)	330, 331, 344, 725
AsuHPI	GGTGA	1 cut(s)	490
AsuII	TTCGAA	2 cut(s)	837, 876
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	261
BamHI	GGATCC	1 cut(s)	926
BanI	GGYRCC	1 cut(s)	159
BbsI	GAAGAC	3 cut(s)	281, 675, 735
Bbv12I	GWGCWC	1 cut(s)	645
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	37, 465
BccI	CCATC	1 cut(s)	479
BceAI	ACGGC	7 cut(s)	124, 221, 346, 425, 450, 604, 643
BcgI	CGANNNNNNTGC	2 cut(s)	959, 993
BciT130I	CCWGG	1 cut(s)	82
BcnI	CCSGG	4 cut(s)	330, 331, 344, 725
BcoDI	GTCTC	2 cut(s)	55, 384
BfaI	CTAG	1 cut(s)	129
BfoI	RGCGCY	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	953
BglI	GCCNNNNNGGC	2 cut(s)	224, 905
BisI	GCNGC	9 cut(s)	26, 77, 228, 231, 234, 378, 447, 468, 479
BlsI	GCNGC	9 cut(s)	27, 78, 229, 232, 235, 379, 448, 469, 480
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	5 cut(s)	82, 330, 331, 344, 725
Bme18I	GGWCC	1 cut(s)	261
BmeRI	GACNNNNNGTC	2 cut(s)	676, 679
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	3 cut(s)	78, 261, 485
BmiI	GGNNCC	4 cut(s)	35, 161, 297, 928
BmrFI	CCNGG	5 cut(s)	82, 330, 331, 344, 725
BpiI	GAAGAC	3 cut(s)	281, 675, 735
BplI	GAGNNNNNCTC	4 cut(s)	396, 428, 737, 769
Bpu10I	CCTNAGC	1 cut(s)	438
Bpu14I	TTCGAA	2 cut(s)	837, 876
BpuMI	CCSGG	4 cut(s)	330, 331, 344, 725
BsaAI	YACGTR	1 cut(s)	426
BsaHI	GRCGYC	3 cut(s)	114, 160, 254
BsaI	GGTCTC	1 cut(s)	384
BsaJI	CCNNGG	7 cut(s)	66, 80, 219, 291, 329, 343, 362
BsaWI	WCCGGW	2 cut(s)	30, 309
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 330
Bse118I	RCCGGY	1 cut(s)	574
BseBI	CCWGG	1 cut(s)	82
BseDI	CCNNGG	7 cut(s)	66, 80, 219, 291, 329, 343, 362
BseGI	GGATG	1 cut(s)	471
BseLI	CCNNNNNNNGG	2 cut(s)	329, 330
BseMII	CTCAG	1 cut(s)	429
BseRI	GAGGAG	4 cut(s)	236, 504, 554, 620
BseX3I	CGGCCG	1 cut(s)	234
BseXI	GCAGC	2 cut(s)	37, 465
Bsh1236I	CGCG	4 cut(s)	326, 467, 494, 546
Bsh1285I	CGRYCG	2 cut(s)	237, 579
BshFI	GGCC	7 cut(s)	79, 218, 236, 361, 470, 487, 551
BshNI	GGYRCC	1 cut(s)	159
BsiEI	CGRYCG	2 cut(s)	237, 579
BsiHKAI	GWGCWC	1 cut(s)	645
BsiHKCI	CYCGRG	1 cut(s)	329
BsiWI	CGTACG	1 cut(s)	426
BslFI	GGGAC	2 cut(s)	636, 675
BslI	CCNNNNNNNGG	2 cut(s)	329, 330
BsmAI	GTCTC	2 cut(s)	55, 384
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	636, 675
BsnI	GGCC	7 cut(s)	79, 218, 236, 361, 470, 487, 551
Bso31I	GGTCTC	1 cut(s)	384
BsoBI	CYCGRG	1 cut(s)	329
Bsp119I	TTCGAA	2 cut(s)	837, 876
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp143I	GATC	1 cut(s)	926
BspANI	GGCC	7 cut(s)	79, 218, 236, 361, 470, 487, 551
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	4 cut(s)	326, 467, 494, 546
BspLI	GGNNCC	4 cut(s)	35, 161, 297, 928
BspMI	ACCTGC	1 cut(s)	953
BspPI	GGATC	2 cut(s)	921, 934
BspQI	GCTCTTC	1 cut(s)	239
BspT104I	TTCGAA	2 cut(s)	837, 876
BspT107I	GGYRCC	1 cut(s)	159
BspTNI	GGTCTC	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	574
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	7 cut(s)	66, 80, 219, 291, 329, 343, 362
BssMI	GATC	1 cut(s)	926
BssNI	GRCGYC	3 cut(s)	114, 160, 254
Bst2UI	CCWGG	1 cut(s)	82
Bst4CI	ACNGT	2 cut(s)	265, 292
Bst6I	CTCTTC	1 cut(s)	239
BstACI	GRCGYC	3 cut(s)	114, 160, 254
BstBAI	YACGTR	1 cut(s)	426
BstBI	TTCGAA	2 cut(s)	837, 876
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	438
BstDSI	CCRYGG	2 cut(s)	291, 362
BstF5I	GGATG	1 cut(s)	471
BstFNI	CGCG	4 cut(s)	326, 467, 494, 546
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	4 cut(s)	162, 328, 496, 546
BstKTI	GATC	1 cut(s)	929
BstMAI	GTCTC	2 cut(s)	55, 384
BstMBI	GATC	1 cut(s)	926
BstMCI	CGRYCG	2 cut(s)	237, 579
BstMWI	GCNNNNNNNGC	7 cut(s)	224, 233, 409, 443, 484, 493, 905
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	5 cut(s)	80, 328, 329, 342, 723
BstSNI	TACGTA	1 cut(s)	426
BstUI	CGCG	4 cut(s)	326, 467, 494, 546
BstV1I	GCAGC	2 cut(s)	37, 465
BstV2I	GAAGAC	3 cut(s)	281, 675, 735
BstX2I	RGATCY	1 cut(s)	926
BstXI	CCANNNNNNTGG	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	926
BstZI	CGGCCG	1 cut(s)	234
BsuRI	GGCC	7 cut(s)	79, 218, 236, 361, 470, 487, 551
BtgI	CCRYGG	2 cut(s)	291, 362
BtsCI	GGATG	1 cut(s)	471
BtsI	GCAGTG	1 cut(s)	853
BtsIMutI	CAGTG	2 cut(s)	102, 853
BveI	ACCTGC	1 cut(s)	953
Cac8I	GCNNGC	1 cut(s)	324
CfoI	GCGC	4 cut(s)	162, 328, 496, 546
Cfr10I	RCCGGY	1 cut(s)	574
Cfr13I	GGNCC	3 cut(s)	78, 261, 485
Cfr9I	CCCGGG	1 cut(s)	329
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	6 cut(s)	19, 89, 407, 423, 427, 457
CviQI	GTAC	6 cut(s)	19, 89, 407, 423, 427, 457
DdeI	CTNAG	1 cut(s)	438
DinI	GGCGCC	1 cut(s)	161
DpnI	GATC	1 cut(s)	928
DpnII	GATC	1 cut(s)	926
DriI	GACNNNNNGTC	2 cut(s)	676, 679
EaeI	YGGCCR	2 cut(s)	234, 468
EagI	CGGCCG	1 cut(s)	234
Eam1104I	CTCTTC	1 cut(s)	239
Eam1105I	GACNNNNNGTC	2 cut(s)	676, 679
EarI	CTCTTC	1 cut(s)	239
EciI	GGCGGA	2 cut(s)	395, 922
EclXI	CGGCCG	1 cut(s)	234
Eco105I	TACGTA	1 cut(s)	426
Eco31I	GGTCTC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	261
Eco52I	CGGCCG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	80
EgeI	GGCGCC	1 cut(s)	161
EheI	GGCGCC	1 cut(s)	161
Esp3I	CGTCTC	1 cut(s)	55
FaiI	YATR	4 cut(s)	180, 452, 560, 1003
FaqI	GGGAC	2 cut(s)	636, 675
FauI	CCCGC	1 cut(s)	331
Fnu4HI	GCNGC	9 cut(s)	26, 77, 228, 231, 234, 378, 447, 468, 479
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	9 cut(s)	26, 77, 228, 231, 234, 378, 447, 468, 479
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	4 cut(s)	161, 327, 495, 545
GluI	GCNGC	9 cut(s)	26, 77, 228, 231, 234, 378, 447, 468, 479
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	7 cut(s)	79, 218, 236, 361, 470, 487, 551
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	4 cut(s)	162, 328, 496, 546
Hin1I	GRCGYC	3 cut(s)	114, 160, 254
Hin6I	GCGC	4 cut(s)	160, 326, 494, 544
HinP1I	GCGC	4 cut(s)	160, 326, 494, 544
HindIII	AAGCTT	1 cut(s)	862
HinfI	GANTC	8 cut(s)	4, 122, 200, 608, 674, 688, 731, 902
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	9 cut(s)	61, 389, 532, 565, 745, 757, 766, 926, 985
Hpy188III	TCNNGA	3 cut(s)	241, 781, 814
Hpy8I	GTNNAC	1 cut(s)	457
Hpy99I	CGWCG	5 cut(s)	116, 140, 259, 682, 685
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	2 cut(s)	265, 292
HpyCH4IV	ACGT	4 cut(s)	254, 314, 425, 567
HpyF10VI	GCNNNNNNNGC	7 cut(s)	224, 233, 409, 443, 484, 493, 905
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	4 cut(s)	254, 314, 425, 567
Hsp92I	GRCGYC	3 cut(s)	114, 160, 254
HspAI	GCGC	4 cut(s)	160, 326, 494, 544
KasI	GGCGCC	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	926
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	4 cut(s)	541, 632, 648, 757
Lsp1109I	GCAGC	2 cut(s)	37, 465
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	4 cut(s)	254, 314, 425, 567
MaeIII	GTNAC	4 cut(s)	100, 131, 584, 609
MalI	GATC	1 cut(s)	928
MboI	GATC	1 cut(s)	926
MflI	RGATCY	1 cut(s)	926
MhlI	GDGCHC	1 cut(s)	645
MluCI	AATT	3 cut(s)	55, 595, 880
Mly113I	GGCGCC	1 cut(s)	160
MlyI	GAGTC	5 cut(s)	209, 617, 668, 697, 725
MmeI	TCCRAC	2 cut(s)	543, 789
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	1 cut(s)	570
MspA1I	CMGCKG	2 cut(s)	478, 648
MspR9I	CCNGG	5 cut(s)	82, 330, 331, 344, 725
MvaI	CCWGG	1 cut(s)	82
MvnI	CGCG	4 cut(s)	326, 467, 494, 546
MwoI	GCNNNNNNNGC	7 cut(s)	224, 233, 409, 443, 484, 493, 905
NarI	GGCGCC	1 cut(s)	160
NciI	CCSGG	4 cut(s)	330, 331, 344, 725
NdeII	GATC	1 cut(s)	926
NlaIV	GGNNCC	4 cut(s)	35, 161, 297, 928
NmeAIII	GCCGAG	3 cut(s)	91, 244, 711
NmuCI	GTSAC	3 cut(s)	100, 131, 609
NspV	TTCGAA	2 cut(s)	837, 876
PciSI	GCTCTTC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	3 cut(s)	200, 683, 804
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	3 cut(s)	4, 122, 902
Pfl23II	CGTACG	1 cut(s)	426
PfoI	TCCNGGA	1 cut(s)	723
PkrI	GCNGC	9 cut(s)	27, 78, 229, 232, 235, 379, 448, 469, 480
PleI	GAGTC	5 cut(s)	208, 616, 668, 696, 725
PluTI	GGCGCC	1 cut(s)	163
PpsI	GAGTC	5 cut(s)	208, 616, 668, 696, 725
Ppu21I	YACGTR	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
PspLI	CGTACG	1 cut(s)	426
PspN4I	GGNNCC	4 cut(s)	35, 161, 297, 928
PspPI	GGNCC	3 cut(s)	78, 261, 485
PsuI	RGATCY	1 cut(s)	926
PvuII	CAGCTG	1 cut(s)	478
RsaI	GTAC	6 cut(s)	20, 90, 408, 424, 428, 458
RsaNI	GTAC	6 cut(s)	19, 89, 407, 423, 427, 457
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	9 cut(s)	26, 77, 228, 231, 234, 378, 447, 468, 479
Sau3AI	GATC	1 cut(s)	926
Sau96I	GGNCC	3 cut(s)	78, 261, 485
ScaI	AGTACT	1 cut(s)	20
SchI	GAGTC	5 cut(s)	209, 617, 668, 697, 725
ScrFI	CCNGG	5 cut(s)	82, 330, 331, 344, 725
SduI	GDGCHC	1 cut(s)	645
SfoI	GGCGCC	1 cut(s)	161
SfuI	TTCGAA	2 cut(s)	837, 876
SinI	GGWCC	1 cut(s)	261
SmaI	CCCGGG	1 cut(s)	331
SnaBI	TACGTA	1 cut(s)	426
Sse9I	AATT	3 cut(s)	55, 595, 880
SspDI	GGCGCC	1 cut(s)	159
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	5 cut(s)	80, 328, 329, 342, 723
TaaI	ACNGT	2 cut(s)	265, 292
TaiI	ACGT	4 cut(s)	257, 317, 428, 570
TaqI	TCGA	8 cut(s)	194, 209, 257, 717, 780, 807, 837, 876
TasI	AATT	3 cut(s)	55, 595, 880
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	7 cut(s)	79, 230, 233, 236, 380, 449, 470
TfiI	GAWTC	3 cut(s)	4, 122, 902
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TscAI	CASTG	2 cut(s)	109, 853
TseFI	GTSAC	3 cut(s)	100, 131, 609
TseI	GCWGC	2 cut(s)	25, 478
Tsp45I	GTSAC	3 cut(s)	100, 131, 609
TspDTI	ATGAA	2 cut(s)	17, 778
TspGWI	ACGGA	3 cut(s)	88, 106, 628
TspMI	CCCGGG	1 cut(s)	329
TspRI	CASTG	2 cut(s)	109, 853
VpaK11BI	GGWCC	1 cut(s)	261
XapI	RAATTY	1 cut(s)	880
XmaI	CCCGGG	1 cut(s)	329
XmnI	GAANNNNTTC	1 cut(s)	338
XspI	CTAG	1 cut(s)	129
ZraI	GACGTC	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.