AT4G12790

Conserved hypothetical ATP binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002226
Physical Location & Seq
Reverse (-)
7517043 .. 7519578
2536 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G12790.1

Sequence Viewer

Length: 816 bp
ATGGGTTACGCCCAGCTAGTTATTGGTCCAGCAGGCAGTGGAAAGTCAACTTATTGCTCGTCTTTGTATGAACATTGTGAAACTATCGGTCGAACAATGCATGTTGTTAACCTTGATCCTGCTGCGGAGATCTTCAACTATCCTGTGGCTATGGATATCAGAGAACTTATTTCTTTGGAAGATGTGATGGAGGATCTAAAGCTTGGTCCTAATGGTGCCCTTATGTATTGCATGGAGTATCTTGAGGATAGCTTACATGATTGGGTGGATGAAGAATTGGAGAACTACAGGGATGACGATTACCTTATCTTTGATTGTCCAGGCCAGATAGAGCTGTTTACACATGTTCCTGTGCTCAAGAACTTTGTGGAGCATTTGAAGCAGAAGAACTTCAACGTCTGTGTTGTTTATCTGCTTGATTCACAGTTCATCACAGATGTAACCAAGTTTATCAGTGGTTGCATGTCATCTCTCGCTGCAATGATCCAGCTTGAATTACCACATGTCAACATCCTCTCAAAAATGGACCTCTTGCAGGACAAAAGCAACATTGATGATTACTTGAATCCGGAGCCTCGCACATTGCTAGCAGAGTTAAACAAAAGGATGGGTCCTCAATATGCAAAACTAAACAAAGCCTTGATTGAGATGGTGGGAGAGTATGGGATGGTGAATTTCATACCCATTAACTTGAGGAAAGAAAAGAGCATTCAATATGTTCTGTCGCAAATCGACGTCTGTATTCAGTTTGGAGAAGATGCTGATGTGAACATCAAAGATGATGACGATTTTAGTGACGATGGTCCTGACCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP_bind_1

Protein Analysis

271

Amino Acids

30.82

Weight (kDa)

4.32

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP_bind_1 PF03029 7 - 249 3.8e-89 Conserved hypothetical ATP binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 738
AccB1I GGYRCC 1 cut(s) 215
AccIII TCCGGA 1 cut(s) 568
AciI CCGC 1 cut(s) 125
AclWI GGATC 3 cut(s) 110, 201, 478
AcsI RAATTY 1 cut(s) 673
AcyI GRCGYC 1 cut(s) 735
AfiI CCNNNNNNNGG 1 cut(s) 535
AflIII ACRYGT 2 cut(s) 343, 502
AgsI TTSAA 6 cut(s) 136, 379, 394, 494, 565, 713
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 5 cut(s) 16, 202, 252, 334, 490
AluI AGCT 5 cut(s) 16, 202, 252, 334, 490
Alw21I GWGCWC 1 cut(s) 357
AlwI GGATC 3 cut(s) 110, 201, 478
Aor13HI TCCGGA 1 cut(s) 568
AoxI GGCC 1 cut(s) 322
ApeKI GCWGC 2 cut(s) 122, 476
ApoI RAATTY 1 cut(s) 673
Asp700I GAANNNNTTC 1 cut(s) 389
AspS9I GGNCC 5 cut(s) 26, 206, 526, 611, 803
AsuHPI GGTGA 1 cut(s) 682
AsuNHI GCTAGC 1 cut(s) 586
AvaII GGWCC 5 cut(s) 26, 206, 526, 611, 803
BaeGI GKGCMC 1 cut(s) 220
BanI GGYRCC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 109, 463
BccI CCATC 5 cut(s) 181, 601, 643, 661, 794
BciT130I CCWGG 1 cut(s) 321
BfaI CTAG 2 cut(s) 17, 587
BfmI CTRYAG 1 cut(s) 286
BglII AGATCT 1 cut(s) 129
BisI GCNGC 2 cut(s) 123, 477
BlsI GCNGC 2 cut(s) 124, 478
Bme1390I CCNGG 1 cut(s) 321
Bme18I GGWCC 5 cut(s) 26, 206, 526, 611, 803
BmgT120I GGNCC 5 cut(s) 26, 206, 526, 611, 803
BmiI GGNNCC 3 cut(s) 217, 573, 612
BmrFI CCNGG 1 cut(s) 321
BmsI GCATC 1 cut(s) 748
BmtI GCTAGC 1 cut(s) 590
BoxI GACNNNNGTC 1 cut(s) 801
BpuEI CTTGAG 3 cut(s) 263, 341, 712
BsaHI GRCGYC 1 cut(s) 735
BsaWI WCCGGW 1 cut(s) 568
Bsc4I CCNNNNNNNGG 1 cut(s) 535
Bse3DI GCAATG 2 cut(s) 486, 581
BseAI TCCGGA 1 cut(s) 568
BseBI CCWGG 1 cut(s) 321
BseGI GGATG 5 cut(s) 274, 298, 510, 612, 672
BseLI CCNNNNNNNGG 1 cut(s) 535
BseMI GCAATG 2 cut(s) 486, 581
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 2 cut(s) 109, 463
BseYI CCCAGC 1 cut(s) 12
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 1 cut(s) 324
BshNI GGYRCC 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 1 cut(s) 569
BslI CCNNNNNNNGG 1 cut(s) 535
BsmI GAATGC 1 cut(s) 708
BsnI GGCC 1 cut(s) 324
Bsp1286I GDGCHC 2 cut(s) 220, 357
Bsp13I TCCGGA 1 cut(s) 568
Bsp143I GATC 4 cut(s) 115, 129, 193, 483
BspACI CCGC 1 cut(s) 125
BspANI GGCC 1 cut(s) 324
BspEI TCCGGA 1 cut(s) 568
BspLI GGNNCC 3 cut(s) 217, 573, 612
BspOI GCTAGC 1 cut(s) 590
BspPI GGATC 3 cut(s) 110, 201, 478
BspT107I GGYRCC 1 cut(s) 215
BsrDI GCAATG 2 cut(s) 486, 581
BssMI GATC 4 cut(s) 115, 129, 193, 483
BssNI GRCGYC 1 cut(s) 735
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 426
BstACI GRCGYC 1 cut(s) 735
BstC8I GCNNGC 2 cut(s) 34, 588
BstENI CCTNNNNNAGG 1 cut(s) 533
BstF5I GGATG 5 cut(s) 274, 298, 510, 612, 672
BstKTI GATC 4 cut(s) 118, 132, 196, 486
BstMBI GATC 4 cut(s) 115, 129, 193, 483
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 379
BstNI CCWGG 1 cut(s) 321
BstNSI RCATGY 4 cut(s) 104, 347, 466, 506
BstPAI GACNNNNGTC 1 cut(s) 801
BstSCI CCNGG 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 286
BstSLI GKGCMC 1 cut(s) 220
BstV1I GCAGC 2 cut(s) 109, 463
BstX2I RGATCY 2 cut(s) 129, 193
BstYI RGATCY 2 cut(s) 129, 193
BsuRI GGCC 1 cut(s) 324
BtsCI GGATG 5 cut(s) 274, 298, 510, 612, 672
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 2 cut(s) 43, 460
Cac8I GCNNGC 2 cut(s) 34, 588
Cfr13I GGNCC 5 cut(s) 26, 206, 526, 611, 803
CviAII CATG 6 cut(s) 101, 232, 257, 344, 463, 503
CviJI RGCY 9 cut(s) 16, 149, 202, 252, 324, 334, 490, 574, 638
CviKI_1 RGCY 9 cut(s) 16, 149, 202, 252, 324, 334, 490, 574, 638
DpnI GATC 4 cut(s) 117, 131, 195, 485
DpnII GATC 4 cut(s) 115, 129, 193, 483
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 5 cut(s) 26, 206, 526, 611, 803
EcoNI CCTNNNNNAGG 1 cut(s) 533
EcoO109I RGGNCCY 1 cut(s) 611
EcoRII CCWGG 1 cut(s) 319
EcoRV GATATC 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 102
FaeI CATG 6 cut(s) 104, 235, 260, 347, 466, 506
FatI CATG 6 cut(s) 100, 231, 256, 343, 462, 502
Fnu4HI GCNGC 2 cut(s) 123, 477
FokI GGATG 5 cut(s) 281, 305, 497, 619, 679
Fsp4HI GCNGC 2 cut(s) 123, 477
FspBI CTAG 2 cut(s) 17, 587
GluI GCNGC 2 cut(s) 123, 477
GsaI CCCAGC 1 cut(s) 16
HaeIII GGCC 1 cut(s) 324
HapII CCGG 1 cut(s) 569
Hin1I GRCGYC 1 cut(s) 735
Hin1II CATG 6 cut(s) 104, 235, 260, 347, 466, 506
HincII GTYRAC 3 cut(s) 48, 109, 508
HindII GTYRAC 3 cut(s) 48, 109, 508
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 2 cut(s) 419, 565
HpaI GTTAAC 1 cut(s) 109
HpaII CCGG 1 cut(s) 569
HphI GGTGA 1 cut(s) 682
Hpy166II GTNNAC 5 cut(s) 48, 109, 339, 508, 769
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 4 cut(s) 242, 358, 569, 806
Hpy8I GTNNAC 5 cut(s) 48, 109, 339, 508, 769
Hpy99I CGWCG 1 cut(s) 737
HpyCH4III ACNGT 1 cut(s) 426
HpyCH4IV ACGT 2 cut(s) 396, 735
HpyCH4V TGCA 6 cut(s) 100, 231, 462, 479, 535, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 379
HpySE526I ACGT 2 cut(s) 396, 735
Hsp92I GRCGYC 1 cut(s) 735
Hsp92II CATG 6 cut(s) 104, 235, 260, 347, 466, 506
Kpn2I TCCGGA 1 cut(s) 568
KspAI GTTAAC 1 cut(s) 109
Kzo9I GATC 4 cut(s) 115, 129, 193, 483
LmnI GCTCC 2 cut(s) 370, 571
Lsp1109I GCAGC 2 cut(s) 109, 463
LweI GCATC 1 cut(s) 748
MaeI CTAG 2 cut(s) 17, 587
MaeII ACGT 2 cut(s) 396, 735
MaeIII GTNAC 3 cut(s) 5, 439, 794
MalI GATC 4 cut(s) 117, 131, 195, 485
MboI GATC 4 cut(s) 115, 129, 193, 483
MboII GAAGA 5 cut(s) 124, 191, 284, 397, 767
MflI RGATCY 2 cut(s) 129, 193
MhlI GDGCHC 2 cut(s) 220, 357
MluCI AATT 3 cut(s) 275, 494, 673
MnlI CCTC 7 cut(s) 184, 238, 524, 539, 585, 624, 687
Mph1103I ATGCAT 1 cut(s) 102
MroI TCCGGA 1 cut(s) 568
MroXI GAANNNNTTC 1 cut(s) 389
MseI TTAA 3 cut(s) 108, 596, 687
MspI CCGG 1 cut(s) 569
MspR9I CCNGG 1 cut(s) 321
Mva1269I GAATGC 1 cut(s) 708
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 379
NdeII GATC 4 cut(s) 115, 129, 193, 483
NheI GCTAGC 1 cut(s) 586
NlaIII CATG 6 cut(s) 104, 235, 260, 347, 466, 506
NlaIV GGNNCC 3 cut(s) 217, 573, 612
NmuCI GTSAC 1 cut(s) 794
NsiI ATGCAT 1 cut(s) 102
NspI RCATGY 4 cut(s) 104, 347, 466, 506
PciI ACATGT 2 cut(s) 343, 502
PctI GAATGC 1 cut(s) 708
PdmI GAANNNNTTC 1 cut(s) 389
PfeI GAWTC 2 cut(s) 419, 565
PkrI GCNGC 2 cut(s) 124, 478
PpuMI RGGWCCY 1 cut(s) 611
PscI ACATGT 2 cut(s) 343, 502
PshAI GACNNNNGTC 1 cut(s) 801
Psp5II RGGWCCY 1 cut(s) 611
Psp6I CCWGG 1 cut(s) 319
PspFI CCCAGC 1 cut(s) 12
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 3 cut(s) 217, 573, 612
PspPI GGNCC 5 cut(s) 26, 206, 526, 611, 803
PspPPI RGGWCCY 1 cut(s) 611
PsuI RGATCY 2 cut(s) 129, 193
SaqAI TTAA 3 cut(s) 108, 596, 687
SatI GCNGC 2 cut(s) 123, 477
Sau3AI GATC 4 cut(s) 115, 129, 193, 483
Sau96I GGNCC 5 cut(s) 26, 206, 526, 611, 803
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 2 cut(s) 220, 357
SfaNI GCATC 1 cut(s) 748
SfcI CTRYAG 1 cut(s) 286
SinI GGWCC 5 cut(s) 26, 206, 526, 611, 803
SmlI CTYRAG 3 cut(s) 242, 356, 691
SmoI CTYRAG 3 cut(s) 242, 356, 691
Sse9I AATT 3 cut(s) 275, 494, 673
SsiI CCGC 1 cut(s) 125
SspMI CTAG 2 cut(s) 17, 587
StyD4I CCNGG 1 cut(s) 319
TaaI ACNGT 1 cut(s) 426
TaiI ACGT 2 cut(s) 399, 738
TaqI TCGA 2 cut(s) 91, 732
TaqII GACCGA 1 cut(s) 77
TasI AATT 3 cut(s) 275, 494, 673
TfiI GAWTC 2 cut(s) 419, 565
Tru1I TTAA 3 cut(s) 108, 596, 687
Tru9I TTAA 3 cut(s) 108, 596, 687
TscAI CASTG 2 cut(s) 43, 460
TseFI GTSAC 1 cut(s) 794
TseI GCWGC 2 cut(s) 122, 476
Tsp45I GTSAC 1 cut(s) 794
TspDTI ATGAA 4 cut(s) 84, 285, 418, 667
TspRI CASTG 2 cut(s) 43, 460
VpaK11BI GGWCC 5 cut(s) 26, 206, 526, 611, 803
XagI CCTNNNNNAGG 1 cut(s) 533
XapI RAATTY 1 cut(s) 673
XceI RCATGY 4 cut(s) 104, 347, 466, 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 389
XspI CTAG 2 cut(s) 17, 587
ZraI GACGTC 1 cut(s) 736
Zsp2I ATGCAT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.