Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002226

Physical Location & Seq

Genomic Coordinates Reverse (-)

18566064 .. 18569298

Gene Structure 3235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G166900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGGTTATGCACAACTGGTTATTGGCCCTGCTGGCAGCGGCAAGTCGACTTATTGCTCTAAATTGCACGAACACTGTACAACTGTTGGGAGGAATATTCATATTATTAACTTGGATCCTGCTGCGGAAAATTTTGACTACCCTGTGGCCTTAGATATTAGGGAGCTTGTTTCCTTGGATGATGTGATGGAGGAACTTGGATTGGGTCCCAATGGTGGACTTTTGTACTGCATGGAACACCTTGAAGACAATCTGGATGATTGGCTCACAGAGGAATTGGACAATTACTTGGATGATGACTACTTAGTTTTTGACTGCCCAGGCCAGATAGAACTTTTTTCGCATGTTCCTGTGCTAAAGAACTTTGTGGACCATTTGAAGCGTAAAAATTTCAGCATCTGCGCCGTATACTTGCTTGATTCACAGTTCATGACGGATGTGACAAAGTTTATTAGTGGGTGCATGTCATCCCTTTCTGCAATGGTTCAACTTGAAGTACCACATGTCAATATCCTCTCCAAAATGGACCTTGTGGCCAAAAAAAAGGATGTTGAAGATTTCTTGAATCCGGAGCCTCAAGTTTTGTTATCAGAGTTGAATCAACGCATGGCTCCTCAGTTTGCAAAGCTAAACAAATCTTTGGTTGAACTGGTTGATAATTATGGCATGGTGAGTTTTGTGCCTCTAAACTTGAGAAAGGCGACAAGCATAAGCTATGTCCTGGCTCAGATCGATACCTGCATTCAGTATGGAGAAGATGCTGACGTGAAGATTAAGGATTTTGATCCAGAAGATGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

268

Amino Acids

30.03

Weight (kDa)

4.41

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12790 AT4G12790 AT4G12790 AT4G12790 AT4G12790 AT4G12790
fragaria_vesca	FvH4_6g36140 FvH4_6g36141 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261
malus_domestica	MD09G1159000.v1.1 MD17G1145200.v1.1
prunus_persica	Prupe.3G166900_v2.0.a1 Prupe.3G166900_v2.0.a1 Prupe.3G166900_v2.0.a1
pyrus_communis	pycom09g07750 pycom17g13810
rosa_chinensis	RchiOBHm_Chr2g0150081 RchiOBHm_Chr3g0481161
rosa_laevigata	RLG00000020464 RLG00000023418
rosa_multiflora	Rmu_sc0001169.1_g000004 Rmu_sc0009445.1_g000011
rosa_roxburghii	Rroxscaffold_2G00097450
rosa_rugosa	Rorug02G0418500 Rorug02G0418600 Rorug02G0418700 Rorug02G0418800 Rorug02G0418900 Rorug02G0419000 Rorug02G0419100
rosa_samantha	Rh2AG477700 Rh2BG490000 Rh2CG463500 Rh2DG498800 Rh3AG241100
rosa_wichuraiana	Rw2G038970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	746
AccI	GTMKAC	2 cut(s)	47, 408
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	2 cut(s)	39, 125
AclWI	GGATC	3 cut(s)	110, 123, 779
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	2 cut(s)	130, 388
AfaI	GTAC	3 cut(s)	79, 227, 498
AfiI	CCNNNNNNNGG	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	8 cut(s)	245, 379, 488, 494, 554, 565, 598, 647
AjiI	CACGTC	1 cut(s)	766
AjnI	CCWGG	2 cut(s)	319, 720
AluBI	AGCT	3 cut(s)	166, 628, 714
AluI	AGCT	3 cut(s)	166, 628, 714
AlwI	GGATC	3 cut(s)	110, 123, 779
AlwNI	CAGNNNCTG	1 cut(s)	399
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	4 cut(s)	25, 147, 322, 534
ApeKI	GCWGC	2 cut(s)	36, 122
ApoI	RAATTY	2 cut(s)	130, 388
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	4 cut(s)	26, 206, 370, 526
AsuHPI	GGTGA	1 cut(s)	682
AvaII	GGWCC	3 cut(s)	206, 370, 526
BalI	TGGCCA	1 cut(s)	536
BamHI	GGATCC	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	48, 109
BccI	CCATC	1 cut(s)	181
BceAI	ACGGC	1 cut(s)	389
BciT130I	CCWGG	2 cut(s)	321, 722
BfuAI	ACCTGC	1 cut(s)	746
BglI	GCCNNNNNGGC	1 cut(s)	33
BisI	GCNGC	3 cut(s)	37, 40, 123
BlsI	GCNGC	3 cut(s)	38, 41, 124
Bme1390I	CCNGG	2 cut(s)	321, 722
Bme18I	GGWCC	3 cut(s)	206, 370, 526
BmgBI	CACGTC	1 cut(s)	766
BmgT120I	GGNCC	4 cut(s)	26, 206, 370, 526
BmiI	GGNNCC	5 cut(s)	117, 207, 208, 573, 612
BmrFI	CCNGG	2 cut(s)	321, 722
BmsI	GCATC	2 cut(s)	405, 748
BpiI	GAAGAC	1 cut(s)	252
BpuEI	CTTGAG	2 cut(s)	561, 712
Bsa29I	ATCGAT	1 cut(s)	732
BsaBI	GATNNNNATC	1 cut(s)	783
BsaJI	CCNNGG	2 cut(s)	174, 319
BsaWI	WCCGGW	1 cut(s)	568
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	2 cut(s)	21, 654
Bse3DI	GCAATG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	783
BseAI	TCCGGA	1 cut(s)	568
BseBI	CCWGG	2 cut(s)	321, 722
BseCI	ATCGAT	1 cut(s)	732
BseDI	CCNNGG	2 cut(s)	174, 319
BseGI	GGATG	6 cut(s)	184, 262, 298, 442, 467, 553
BseJI	GATNNNNATC	1 cut(s)	783
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	2 cut(s)	629, 740
BseNI	ACTGG	2 cut(s)	21, 654
BseRI	GAGGAG	1 cut(s)	603
BseXI	GCAGC	2 cut(s)	48, 109
BshFI	GGCC	4 cut(s)	27, 149, 324, 536
BshVI	ATCGAT	1 cut(s)	732
BsiSI	CCGG	1 cut(s)	569
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	741
BsnI	GGCC	4 cut(s)	27, 149, 324, 536
Bsp13I	TCCGGA	1 cut(s)	568
Bsp1407I	TGTACA	1 cut(s)	77
Bsp143I	GATC	3 cut(s)	115, 729, 784
BspACI	CCGC	2 cut(s)	39, 125
BspANI	GGCC	4 cut(s)	27, 149, 324, 536
BspCNI	CTCAG	2 cut(s)	628, 739
BspDI	ATCGAT	1 cut(s)	732
BspEI	TCCGGA	1 cut(s)	568
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	5 cut(s)	117, 207, 208, 573, 612
BspMI	ACCTGC	1 cut(s)	746
BspPI	GGATC	3 cut(s)	110, 123, 779
BsrDI	GCAATG	1 cut(s)	486
BsrGI	TGTACA	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	21, 654
BssECI	CCNNGG	2 cut(s)	174, 319
BssMI	GATC	3 cut(s)	115, 729, 784
BssNAI	GTATAC	1 cut(s)	409
BssT1I	CCWWGG	1 cut(s)	174
Bst1107I	GTATAC	1 cut(s)	409
Bst2UI	CCWGG	2 cut(s)	321, 722
Bst4CI	ACNGT	3 cut(s)	77, 85, 426
BstAUI	TGTACA	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	4 cut(s)	151, 304, 615, 726
BstF5I	GGATG	6 cut(s)	184, 262, 298, 442, 467, 553
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	3 cut(s)	118, 732, 787
BstMBI	GATC	3 cut(s)	115, 729, 784
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	2 cut(s)	321, 722
BstNSI	RCATGY	3 cut(s)	347, 466, 506
BstSCI	CCNGG	2 cut(s)	319, 720
BstV1I	GCAGC	2 cut(s)	48, 109
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BstZ17I	GTATAC	1 cut(s)	409
Bsu15I	ATCGAT	1 cut(s)	732
BsuRI	GGCC	4 cut(s)	27, 149, 324, 536
BsuTUI	ATCGAT	1 cut(s)	732
BtrI	CACGTC	1 cut(s)	766
BtsCI	GGATG	6 cut(s)	184, 262, 298, 442, 467, 553
BtsIMutI	CAGTG	1 cut(s)	73
BveI	ACCTGC	1 cut(s)	746
Cac8I	GCNNGC	1 cut(s)	34
CaiI	CAGNNNCTG	1 cut(s)	399
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	1 cut(s)	404
Cfr13I	GGNCC	4 cut(s)	26, 206, 370, 526
ClaI	ATCGAT	1 cut(s)	732
Csp6I	GTAC	3 cut(s)	78, 226, 497
CviAII	CATG	7 cut(s)	232, 344, 430, 463, 503, 607, 667
CviQI	GTAC	3 cut(s)	78, 226, 497
DdeI	CTNAG	4 cut(s)	151, 304, 615, 726
DpnI	GATC	3 cut(s)	117, 731, 786
DpnII	GATC	3 cut(s)	115, 729, 784
EaeI	YGGCCR	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	174
Eco47I	GGWCC	3 cut(s)	206, 370, 526
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	319, 720
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	7 cut(s)	235, 347, 433, 466, 506, 610, 670
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	7 cut(s)	231, 343, 429, 462, 502, 606, 666
FblI	GTMKAC	2 cut(s)	47, 408
Fnu4HI	GCNGC	3 cut(s)	37, 40, 123
FokI	GGATG	6 cut(s)	191, 269, 305, 449, 454, 560
Fsp4HI	GCNGC	3 cut(s)	37, 40, 123
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	3 cut(s)	37, 40, 123
HaeIII	GGCC	4 cut(s)	27, 149, 324, 536
HapII	CCGG	1 cut(s)	569
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	7 cut(s)	235, 347, 433, 466, 506, 610, 670
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	3 cut(s)	419, 565, 598
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	1 cut(s)	682
Hpy166II	GTNNAC	4 cut(s)	48, 218, 370, 409
Hpy188I	TCNGA	2 cut(s)	592, 729
Hpy188III	TCNNGA	5 cut(s)	254, 430, 562, 569, 788
Hpy8I	GTNNAC	4 cut(s)	48, 218, 370, 409
HpyCH4III	ACNGT	3 cut(s)	77, 85, 426
HpyCH4IV	ACGT	1 cut(s)	765
HpyCH4V	TGCA	7 cut(s)	11, 67, 231, 462, 479, 623, 741
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	4 cut(s)	151, 304, 615, 726
HpySE526I	ACGT	1 cut(s)	765
Hsp92II	CATG	7 cut(s)	235, 347, 433, 466, 506, 610, 670
HspAI	GCGC	1 cut(s)	402
KflI	GGGWCCC	1 cut(s)	206
Kpn2I	TCCGGA	1 cut(s)	568
Kzo9I	GATC	3 cut(s)	115, 729, 784
LmnI	GCTCC	3 cut(s)	163, 571, 616
Lsp1109I	GCAGC	2 cut(s)	48, 109
LweI	GCATC	2 cut(s)	405, 748
MaeII	ACGT	1 cut(s)	765
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	3 cut(s)	117, 731, 786
MboI	GATC	3 cut(s)	115, 729, 784
MboII	GAAGA	5 cut(s)	257, 566, 767, 781, 803
MflI	RGATCY	1 cut(s)	115
MlsI	TGGCCA	1 cut(s)	536
MluCI	AATT	6 cut(s)	62, 130, 275, 283, 388, 658
MluNI	TGGCCA	1 cut(s)	536
MnlI	CCTC	7 cut(s)	84, 184, 265, 524, 585, 624, 693
Mox20I	TGGCCA	1 cut(s)	536
MroI	TCCGGA	1 cut(s)	568
MscI	TGGCCA	1 cut(s)	536
MseI	TTAA	3 cut(s)	108, 774, 802
Msp20I	TGGCCA	1 cut(s)	536
MspA1I	CMGCKG	1 cut(s)	39
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	2 cut(s)	321, 722
Mva1269I	GAATGC	1 cut(s)	741
MvaI	CCWGG	2 cut(s)	321, 722
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	3 cut(s)	115, 729, 784
NlaIII	CATG	7 cut(s)	235, 347, 433, 466, 506, 610, 670
NlaIV	GGNNCC	5 cut(s)	117, 207, 208, 573, 612
NmuCI	GTSAC	1 cut(s)	439
NspI	RCATGY	3 cut(s)	347, 466, 506
PagI	TCATGA	1 cut(s)	429
PciI	ACATGT	1 cut(s)	502
PctI	GAATGC	1 cut(s)	741
PfeI	GAWTC	3 cut(s)	419, 565, 598
PkrI	GCNGC	3 cut(s)	38, 41, 124
PpuMI	RGGWCCY	1 cut(s)	206
PscI	ACATGT	1 cut(s)	502
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	319, 720
PspGI	CCWGG	2 cut(s)	319, 720
PspN4I	GGNNCC	5 cut(s)	117, 207, 208, 573, 612
PspPI	GGNCC	4 cut(s)	26, 206, 370, 526
PspPPI	RGGWCCY	1 cut(s)	206
PstNI	CAGNNNCTG	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	3 cut(s)	79, 227, 498
RsaNI	GTAC	3 cut(s)	78, 226, 497
SalI	GTCGAC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	108, 774, 802
SatI	GCNGC	3 cut(s)	37, 40, 123
Sau3AI	GATC	3 cut(s)	115, 729, 784
Sau96I	GGNCC	4 cut(s)	26, 206, 370, 526
ScrFI	CCNGG	2 cut(s)	321, 722
SetI	ASST	7 cut(s)	168, 243, 531, 630, 716, 740, 768
SfaNI	GCATC	2 cut(s)	405, 748
SinI	GGWCC	3 cut(s)	206, 370, 526
SmlI	CTYRAG	2 cut(s)	576, 691
SmoI	CTYRAG	2 cut(s)	576, 691
Sse9I	AATT	6 cut(s)	62, 130, 275, 283, 388, 658
SsiI	CCGC	2 cut(s)	39, 125
SspI	AATATT	1 cut(s)	97
StyD4I	CCNGG	2 cut(s)	319, 720
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	3 cut(s)	77, 85, 426
TaiI	ACGT	1 cut(s)	768
TaqI	TCGA	2 cut(s)	47, 732
TasI	AATT	6 cut(s)	62, 130, 275, 283, 388, 658
TatI	WGTACW	2 cut(s)	77, 225
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	3 cut(s)	419, 565, 598
Tru1I	TTAA	3 cut(s)	108, 774, 802
Tru9I	TTAA	3 cut(s)	108, 774, 802
TscAI	CASTG	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	2 cut(s)	36, 122
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	2 cut(s)	89, 418
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	1 cut(s)	80
VpaK11BI	GGWCC	3 cut(s)	206, 370, 526
XapI	RAATTY	2 cut(s)	130, 388
XceI	RCATGY	3 cut(s)	347, 466, 506
XmiI	GTMKAC	2 cut(s)	47, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.